BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00012439
         (603 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   294   1e-77
gb|EEE90962.2| transcription factor-related family protein [Popu...   282   5e-74
ref|XP_002310512.1| predicted protein [Populus trichocarpa]           282   5e-74
ref|XP_002307021.1| predicted protein [Populus trichocarpa] gi|2...   280   3e-73
gb|ESR65959.1| hypothetical protein CICLE_v10007802mg [Citrus cl...   242   5e-62
gb|ESR65958.1| hypothetical protein CICLE_v10007802mg [Citrus cl...   242   5e-62
gb|ESR65957.1| hypothetical protein CICLE_v10007802mg [Citrus cl...   242   5e-62
gb|ESR65956.1| hypothetical protein CICLE_v10007802mg [Citrus cl...   242   5e-62
gb|ESR65955.1| hypothetical protein CICLE_v10007802mg [Citrus cl...   242   5e-62
gb|EOY33216.1| BSD domain (BTF2-like transcription factors, Syna...   238   9e-61
gb|EOY33215.1| BSD domain (BTF2-like transcription factors, Syna...   238   9e-61
gb|EOY33214.1| BSD domain (BTF2-like transcription factors, Syna...   238   9e-61
gb|EOY33213.1| BSD domain (BTF2-like transcription factors, Syna...   238   9e-61
gb|EOY33212.1| BSD domain (BTF2-like transcription factors, Syna...   238   9e-61
gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Syna...   238   9e-61
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   235   8e-60
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...   226   3e-57
ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Caps...   220   3e-55
ref|NP_175971.3| probable RNA polymerase II transcription factor...   219   3e-55
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   218   7e-55

>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
           communis] gi|223529828|gb|EEF31761.1| TFIIH basal
           transcription factor complex subunit, putative [Ricinus
           communis]
          Length = 597

 Score =  294 bits (752), Expect = 1e-77
 Identities = 147/199 (73%), Positives = 164/199 (82%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPSEQPSTEELLLRMKL 180
           TSNQ VSYIFEF+N++DL +C+E VGKALSK  ++ KP D  E PS+QPSTEELLLRM L
Sbjct: 70  TSNQGVSYIFEFENHDDLRICKEIVGKALSKLGDTPKPPDAPEVPSDQPSTEELLLRMNL 129

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           L+EN ELQKLHKQFVSD VLTD+EFWATRKKLLN +FS+KSKQRVGLKS ML+DSKPLID
Sbjct: 130 LRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGEFSRKSKQRVGLKSVMLADSKPLID 189

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           G+TNKVTFNLTPEIV EIFAEKPAVHQAYLSLVPNKM++RDFWTKYC AEYL  S+N   
Sbjct: 190 GQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKMSERDFWTKYCRAEYLQRSRNIHA 249

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       LFLK DD
Sbjct: 250 AAAEAAEDEELALFLKPDD 268


>gb|EEE90962.2| transcription factor-related family protein [Populus trichocarpa]
          Length = 603

 Score =  282 bits (721), Expect = 5e-74
 Identities = 142/202 (70%), Positives = 161/202 (79%), Gaps = 3/202 (1%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPSEQPSTEELLLRMKL 180
           TS+Q VSYIFEF++Y+DLHVC+E VGKALSK  E+ KP DTSE PSEQPSTEELLLRM +
Sbjct: 71  TSSQGVSYIFEFESYDDLHVCKECVGKALSKTGETPKPIDTSEVPSEQPSTEELLLRMNM 130

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           LQENSELQ LHK+FVSDG+LT+ EFWATRKKLL  +FSKKSKQR GLKS +LSD+KP  D
Sbjct: 131 LQENSELQNLHKRFVSDGILTEAEFWATRKKLLGGNFSKKSKQRTGLKSFVLSDTKPSTD 190

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKN--- 531
           GRTNKVTF LTPEIV E+FAEKPAVH+AYL LVP KM++RDFW+KYC AEYL H+KN   
Sbjct: 191 GRTNKVTFTLTPEIVREVFAEKPAVHRAYLDLVPKKMSERDFWSKYCRAEYLQHAKNANA 250

Query: 532 XXXXXXXXXXXXXXXLFLKTDD 597
                          LFLK DD
Sbjct: 251 AAAAAAEAAEDEELALFLKPDD 272


>ref|XP_002310512.1| predicted protein [Populus trichocarpa]
          Length = 603

 Score =  282 bits (721), Expect = 5e-74
 Identities = 142/202 (70%), Positives = 161/202 (79%), Gaps = 3/202 (1%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPSEQPSTEELLLRMKL 180
           TS+Q VSYIFEF++Y+DLHVC+E VGKALSK  E+ KP DTSE PSEQPSTEELLLRM +
Sbjct: 71  TSSQGVSYIFEFESYDDLHVCKECVGKALSKTGETPKPIDTSEVPSEQPSTEELLLRMNM 130

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           LQENSELQ LHK+FVSDG+LT+ EFWATRKKLL  +FSKKSKQR GLKS +LSD+KP  D
Sbjct: 131 LQENSELQNLHKRFVSDGILTEAEFWATRKKLLGGNFSKKSKQRTGLKSFVLSDTKPSTD 190

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKN--- 531
           GRTNKVTF LTPEIV E+FAEKPAVH+AYL LVP KM++RDFW+KYC AEYL H+KN   
Sbjct: 191 GRTNKVTFTLTPEIVREVFAEKPAVHRAYLDLVPKKMSERDFWSKYCRAEYLQHAKNANA 250

Query: 532 XXXXXXXXXXXXXXXLFLKTDD 597
                          LFLK DD
Sbjct: 251 AAAAAAEAAEDEELALFLKPDD 272


>ref|XP_002307021.1| predicted protein [Populus trichocarpa] gi|222856470|gb|EEE94017.1|
           transcription factor-related family protein [Populus
           trichocarpa]
          Length = 586

 Score =  280 bits (715), Expect = 3e-73
 Identities = 136/177 (76%), Positives = 155/177 (87%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPSEQPSTEELLLRMKL 180
           TS+Q ++YIFEF++Y+DLHVC+E VGKALSK  E+ KP DTSE PSEQPSTEELL RM +
Sbjct: 71  TSSQGMNYIFEFESYDDLHVCKECVGKALSKTGETPKPVDTSEVPSEQPSTEELLSRMNM 130

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           L+ENSELQKLHK+FVSDGVLT+ EFWATRKKLL  + SKKSKQR GLKS MLSD+KP  D
Sbjct: 131 LRENSELQKLHKRFVSDGVLTEAEFWATRKKLLGGNTSKKSKQRTGLKSVMLSDTKPSTD 190

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKN 531
           GRTNKVTF LTPEIV EIFAEKPAVHQAYL+LVP KM++RDFW+KYC AEYL H+KN
Sbjct: 191 GRTNKVTFTLTPEIVREIFAEKPAVHQAYLTLVPKKMSERDFWSKYCRAEYLQHAKN 247


>gb|ESR65959.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
          Length = 557

 Score =  242 bits (618), Expect = 5e-62
 Identities = 123/199 (61%), Positives = 146/199 (73%), Gaps = 3/199 (1%)
 Frame = +1

Query: 10  QAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEA---PSEQPSTEELLLRMKL 180
           Q  SYIFEFD+Y+DLHVCR+FV K L K  E+   A    A   P EQ S EE+ LR+KL
Sbjct: 75  QGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVKLPDEQLSEEEMQLRIKL 134

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           LQENSELQKLH+QFV   +LT+ EFWA RKKLL+ D SKKSKQRVG KSAM+SD +P  D
Sbjct: 135 LQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATD 194

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           GRTNKVTF+LTPEI+ +IFAEKPAVH+A+L+ VPNKMT+ +FWTKYC AEYL+ +KN   
Sbjct: 195 GRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHA 254

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       +FLK DD
Sbjct: 255 VVAEAAEDEELAVFLKEDD 273


>gb|ESR65958.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  242 bits (618), Expect = 5e-62
 Identities = 123/199 (61%), Positives = 146/199 (73%), Gaps = 3/199 (1%)
 Frame = +1

Query: 10  QAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEA---PSEQPSTEELLLRMKL 180
           Q  SYIFEFD+Y+DLHVCR+FV K L K  E+   A    A   P EQ S EE+ LR+KL
Sbjct: 42  QGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVKLPDEQLSEEEMQLRIKL 101

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           LQENSELQKLH+QFV   +LT+ EFWA RKKLL+ D SKKSKQRVG KSAM+SD +P  D
Sbjct: 102 LQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATD 161

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           GRTNKVTF+LTPEI+ +IFAEKPAVH+A+L+ VPNKMT+ +FWTKYC AEYL+ +KN   
Sbjct: 162 GRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHA 221

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       +FLK DD
Sbjct: 222 VVAEAAEDEELAVFLKEDD 240


>gb|ESR65957.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  242 bits (618), Expect = 5e-62
 Identities = 123/199 (61%), Positives = 146/199 (73%), Gaps = 3/199 (1%)
 Frame = +1

Query: 10  QAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEA---PSEQPSTEELLLRMKL 180
           Q  SYIFEFD+Y+DLHVCR+FV K L K  E+   A    A   P EQ S EE+ LR+KL
Sbjct: 75  QGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVKLPDEQLSEEEMQLRIKL 134

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           LQENSELQKLH+QFV   +LT+ EFWA RKKLL+ D SKKSKQRVG KSAM+SD +P  D
Sbjct: 135 LQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATD 194

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           GRTNKVTF+LTPEI+ +IFAEKPAVH+A+L+ VPNKMT+ +FWTKYC AEYL+ +KN   
Sbjct: 195 GRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHA 254

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       +FLK DD
Sbjct: 255 VVAEAAEDEELAVFLKEDD 273


>gb|ESR65956.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
          Length = 533

 Score =  242 bits (618), Expect = 5e-62
 Identities = 123/199 (61%), Positives = 146/199 (73%), Gaps = 3/199 (1%)
 Frame = +1

Query: 10  QAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEA---PSEQPSTEELLLRMKL 180
           Q  SYIFEFD+Y+DLHVCR+FV K L K  E+   A    A   P EQ S EE+ LR+KL
Sbjct: 75  QGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVKLPDEQLSEEEMQLRIKL 134

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           LQENSELQKLH+QFV   +LT+ EFWA RKKLL+ D SKKSKQRVG KSAM+SD +P  D
Sbjct: 135 LQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATD 194

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           GRTNKVTF+LTPEI+ +IFAEKPAVH+A+L+ VPNKMT+ +FWTKYC AEYL+ +KN   
Sbjct: 195 GRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHA 254

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       +FLK DD
Sbjct: 255 VVAEAAEDEELAVFLKEDD 273


>gb|ESR65955.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
          Length = 536

 Score =  242 bits (618), Expect = 5e-62
 Identities = 123/199 (61%), Positives = 146/199 (73%), Gaps = 3/199 (1%)
 Frame = +1

Query: 10  QAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEA---PSEQPSTEELLLRMKL 180
           Q  SYIFEFD+Y+DLHVCR+FV K L K  E+   A    A   P EQ S EE+ LR+KL
Sbjct: 75  QGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVKLPDEQLSEEEMQLRIKL 134

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           LQENSELQKLH+QFV   +LT+ EFWA RKKLL+ D SKKSKQRVG KSAM+SD +P  D
Sbjct: 135 LQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATD 194

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           GRTNKVTF+LTPEI+ +IFAEKPAVH+A+L+ VPNKMT+ +FWTKYC AEYL+ +KN   
Sbjct: 195 GRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHA 254

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       +FLK DD
Sbjct: 255 VVAEAAEDEELAVFLKEDD 273


>gb|EOY33216.1| BSD domain (BTF2-like transcription factors, Synapse-associated
           proteins and DOS2-like proteins) isoform 6 [Theobroma
           cacao]
          Length = 467

 Score =  238 bits (607), Expect = 9e-61
 Identities = 124/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVE-SSKPADTSEAPSEQPSTEELLLRMK 177
           T+NQ  S+IFEF+NY+DL  CR+FVGK L+K  E S KP  T   P EQ S  E+ LR+K
Sbjct: 71  TNNQNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTY--PDEQLSAAEMELRIK 128

Query: 178 LLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLI 357
           LL+E+SELQKLHKQFV  GVLT+ EFWATRKKLL+ + +KK+KQR+G KSAM+SD KP  
Sbjct: 129 LLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPST 188

Query: 358 DGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXX 537
           DGRTNKVTFNLTPEI+ +IFAEKPAVH+A+L+ VPNKM++RDFWTKY  AEYL+ +KN  
Sbjct: 189 DGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSV 248

Query: 538 XXXXXXXXXXXXXLFLKTDD 597
                        +FLK DD
Sbjct: 249 AAAAEAAEDEELAVFLKQDD 268


>gb|EOY33215.1| BSD domain (BTF2-like transcription factors, Synapse-associated
           proteins and DOS2-like proteins), putative isoform 5,
           partial [Theobroma cacao]
          Length = 481

 Score =  238 bits (607), Expect = 9e-61
 Identities = 124/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVE-SSKPADTSEAPSEQPSTEELLLRMK 177
           T+NQ  S+IFEF+NY+DL  CR+FVGK L+K  E S KP  T   P EQ S  E+ LR+K
Sbjct: 71  TNNQNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTY--PDEQLSAAEMELRIK 128

Query: 178 LLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLI 357
           LL+E+SELQKLHKQFV  GVLT+ EFWATRKKLL+ + +KK+KQR+G KSAM+SD KP  
Sbjct: 129 LLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPST 188

Query: 358 DGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXX 537
           DGRTNKVTFNLTPEI+ +IFAEKPAVH+A+L+ VPNKM++RDFWTKY  AEYL+ +KN  
Sbjct: 189 DGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSV 248

Query: 538 XXXXXXXXXXXXXLFLKTDD 597
                        +FLK DD
Sbjct: 249 AAAAEAAEDEELAVFLKQDD 268


>gb|EOY33214.1| BSD domain (BTF2-like transcription factors, Synapse-associated
           proteins and DOS2-like proteins) isoform 4, partial
           [Theobroma cacao]
          Length = 516

 Score =  238 bits (607), Expect = 9e-61
 Identities = 124/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVE-SSKPADTSEAPSEQPSTEELLLRMK 177
           T+NQ  S+IFEF+NY+DL  CR+FVGK L+K  E S KP  T   P EQ S  E+ LR+K
Sbjct: 27  TNNQNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTY--PDEQLSAAEMELRIK 84

Query: 178 LLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLI 357
           LL+E+SELQKLHKQFV  GVLT+ EFWATRKKLL+ + +KK+KQR+G KSAM+SD KP  
Sbjct: 85  LLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPST 144

Query: 358 DGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXX 537
           DGRTNKVTFNLTPEI+ +IFAEKPAVH+A+L+ VPNKM++RDFWTKY  AEYL+ +KN  
Sbjct: 145 DGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSV 204

Query: 538 XXXXXXXXXXXXXLFLKTDD 597
                        +FLK DD
Sbjct: 205 AAAAEAAEDEELAVFLKQDD 224


>gb|EOY33213.1| BSD domain (BTF2-like transcription factors, Synapse-associated
           proteins and DOS2-like proteins) isoform 3 [Theobroma
           cacao]
          Length = 549

 Score =  238 bits (607), Expect = 9e-61
 Identities = 124/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVE-SSKPADTSEAPSEQPSTEELLLRMK 177
           T+NQ  S+IFEF+NY+DL  CR+FVGK L+K  E S KP  T   P EQ S  E+ LR+K
Sbjct: 71  TNNQNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTY--PDEQLSAAEMELRIK 128

Query: 178 LLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLI 357
           LL+E+SELQKLHKQFV  GVLT+ EFWATRKKLL+ + +KK+KQR+G KSAM+SD KP  
Sbjct: 129 LLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPST 188

Query: 358 DGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXX 537
           DGRTNKVTFNLTPEI+ +IFAEKPAVH+A+L+ VPNKM++RDFWTKY  AEYL+ +KN  
Sbjct: 189 DGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSV 248

Query: 538 XXXXXXXXXXXXXLFLKTDD 597
                        +FLK DD
Sbjct: 249 AAAAEAAEDEELAVFLKQDD 268


>gb|EOY33212.1| BSD domain (BTF2-like transcription factors, Synapse-associated
           proteins and DOS2-like proteins) isoform 2, partial
           [Theobroma cacao]
          Length = 505

 Score =  238 bits (607), Expect = 9e-61
 Identities = 124/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVE-SSKPADTSEAPSEQPSTEELLLRMK 177
           T+NQ  S+IFEF+NY+DL  CR+FVGK L+K  E S KP  T   P EQ S  E+ LR+K
Sbjct: 27  TNNQNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTY--PDEQLSAAEMELRIK 84

Query: 178 LLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLI 357
           LL+E+SELQKLHKQFV  GVLT+ EFWATRKKLL+ + +KK+KQR+G KSAM+SD KP  
Sbjct: 85  LLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPST 144

Query: 358 DGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXX 537
           DGRTNKVTFNLTPEI+ +IFAEKPAVH+A+L+ VPNKM++RDFWTKY  AEYL+ +KN  
Sbjct: 145 DGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSV 204

Query: 538 XXXXXXXXXXXXXLFLKTDD 597
                        +FLK DD
Sbjct: 205 AAAAEAAEDEELAVFLKQDD 224


>gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Synapse-associated
           proteins and DOS2-like proteins), putative isoform 1
           [Theobroma cacao]
          Length = 646

 Score =  238 bits (607), Expect = 9e-61
 Identities = 124/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVE-SSKPADTSEAPSEQPSTEELLLRMK 177
           T+NQ  S+IFEF+NY+DL  CR+FVGK L+K  E S KP  T   P EQ S  E+ LR+K
Sbjct: 71  TNNQNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTY--PDEQLSAAEMELRIK 128

Query: 178 LLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLI 357
           LL+E+SELQKLHKQFV  GVLT+ EFWATRKKLL+ + +KK+KQR+G KSAM+SD KP  
Sbjct: 129 LLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPST 188

Query: 358 DGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXX 537
           DGRTNKVTFNLTPEI+ +IFAEKPAVH+A+L+ VPNKM++RDFWTKY  AEYL+ +KN  
Sbjct: 189 DGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSV 248

Query: 538 XXXXXXXXXXXXXLFLKTDD 597
                        +FLK DD
Sbjct: 249 AAAAEAAEDEELAVFLKQDD 268


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  235 bits (599), Expect = 8e-60
 Identities = 122/201 (60%), Positives = 147/201 (73%), Gaps = 3/201 (1%)
 Frame = +1

Query: 4   SNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPS---EQPSTEELLLRM 174
           S +   YIFEF+NY D  VCREFVG+AL+K  E+SK      A     EQ ST E+  R+
Sbjct: 73  SEKGGGYIFEFENYPDREVCREFVGRALAKFSEASKAGSEQSAVKLFDEQLSTIEMERRI 132

Query: 175 KLLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPL 354
           KLL+E+SELQKLHKQFV  GVLT+ EFWATRKKLL+ + S+ SKQRVG KSAM+SD KPL
Sbjct: 133 KLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPL 192

Query: 355 IDGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNX 534
            DGRTN+VTFNLTPEI+ +IFAEKPAVHQA+L+ VPNKMT++DFW KYC AEYL+ ++N 
Sbjct: 193 TDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNT 252

Query: 535 XXXXXXXXXXXXXXLFLKTDD 597
                         +FLK DD
Sbjct: 253 VAAAAEAAEDEELAVFLKHDD 273


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score =  226 bits (576), Expect = 3e-57
 Identities = 120/202 (59%), Positives = 149/202 (73%), Gaps = 3/202 (1%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSK-PADTSEA--PSEQPSTEELLLR 171
           T +Q  SYIFEF N++DLHVCRE VG AL+K  E+++ P++   A  P EQ S  E+ LR
Sbjct: 71  TKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELR 130

Query: 172 MKLLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKP 351
           M+ LQE+SELQKLHKQFV  GVLT++EFWA RKKLL  D SKKSKQ +G KS+M+ D+KP
Sbjct: 131 MRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKP 190

Query: 352 LIDGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKN 531
           + DGRTNKVTFNLTPEI  +IFA KPAVHQA+L+ VPNK++++DFWTKY  AEYL+ +KN
Sbjct: 191 MSDGRTNKVTFNLTPEIKYQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKN 250

Query: 532 XXXXXXXXXXXXXXXLFLKTDD 597
                          LFLK D+
Sbjct: 251 SIAAAAEAAEDEELALFLKDDE 272


>ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Capsella rubella]
           gi|482575779|gb|EOA39966.1| hypothetical protein
           CARUB_v10008654mg [Capsella rubella]
          Length = 593

 Score =  220 bits (560), Expect = 3e-55
 Identities = 117/200 (58%), Positives = 143/200 (71%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSK-PVESSKPADTSEAPSEQPSTEELLLRMK 177
           T+ Q  S+IFEF NY D+H CR+F+ KAL+K   E +KPA    A +EQ S  EL LR K
Sbjct: 71  TNKQGRSHIFEFGNYPDMHACRDFITKALAKCEEEPNKPA--VPASTEQLSIRELELRFK 128

Query: 178 LLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLI 357
           LL+ENSELQ+LHKQFV   VLT+ EFWATRKKLL  D  +KSKQ++GLKS M+S  KP  
Sbjct: 129 LLKENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMVSGIKPST 188

Query: 358 DGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXX 537
           DGRTN+VTFNLTPEI+ +IFAEKPAV QA++S VP+KMT++DFWTKY  AEYL  +KN  
Sbjct: 189 DGRTNRVTFNLTPEIIFQIFAEKPAVRQAFISYVPSKMTEKDFWTKYFRAEYLYSTKNTA 248

Query: 538 XXXXXXXXXXXXXLFLKTDD 597
                        +FLK D+
Sbjct: 249 VAAAEAAEDEELAVFLKPDE 268


>ref|NP_175971.3| probable RNA polymerase II transcription factor B subunit 1-1
           [Arabidopsis thaliana]
           gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
           Full=Probable RNA polymerase II transcription factor B
           subunit 1-1; AltName: Full=General transcription and DNA
           repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
           Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195172|gb|AEE33293.1| probable RNA polymerase II
           transcription factor B subunit 1-1 [Arabidopsis
           thaliana]
          Length = 591

 Score =  219 bits (559), Expect = 3e-55
 Identities = 114/199 (57%), Positives = 141/199 (70%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPSEQPSTEELLLRMKL 180
           T+ QA S+IFEF+NY D+H CR+F+ KAL+K  E           SEQ S +EL LR KL
Sbjct: 71  TNKQAKSHIFEFENYPDMHACRDFITKALAK-CELEPNKSVVSTSSEQLSIKELELRFKL 129

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           L+ENSELQ+LHKQFV   VLT+ EFWATRKKLL  D  +KSKQ++GLKS M+S  KP  D
Sbjct: 130 LRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMVSGIKPSTD 189

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           GRTN+VTFNLTPEI+ +IFAEKPAV QA+++ VP+KMT++DFWTKY  AEYL  +KN   
Sbjct: 190 GRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAV 249

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       +FLK D+
Sbjct: 250 AAAEAAEDEELAVFLKPDE 268


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
           lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
           ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  218 bits (556), Expect = 7e-55
 Identities = 114/199 (57%), Positives = 142/199 (71%)
 Frame = +1

Query: 1   TSNQAVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPSEQPSTEELLLRMKL 180
           T+    S+IFEF+NY D+H CR+F+ KAL+K  E    +  S + SEQ S +EL LR KL
Sbjct: 71  TNKLGKSHIFEFENYPDMHACRDFITKALAKCEEEPNKSVVSTS-SEQLSIKELELRFKL 129

Query: 181 LQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSKPLID 360
           L+ENSELQ+LHKQFV   VLT+ EFWATRKKLL  D  +KSKQ+VGLKS M+S  KP  D
Sbjct: 130 LRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVSGIKPSTD 189

Query: 361 GRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYC*AEYLNHSKNXXX 540
           GRTN+VTFNLTPEI+ +IFAEKPAV QA+++ VP+KMT++DFWTKY  AEYL  +KN   
Sbjct: 190 GRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAV 249

Query: 541 XXXXXXXXXXXXLFLKTDD 597
                       +FLK D+
Sbjct: 250 AAAEAAEDEELAVFLKPDE 268