BLASTX nr result
ID: Jatropha_contig00008943
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00008943
(537 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri... 175 6e-42
gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus pe... 162 6e-38
ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|2... 160 1e-37
gb|ESR42011.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36
gb|ESR42010.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36
gb|ESR42009.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36
gb|ESR42008.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36
gb|ESR42007.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36
ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|5... 147 1e-33
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 147 1e-33
ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop... 145 4e-33
ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chlor... 139 5e-31
ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidop... 135 7e-30
ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis... 135 7e-30
dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana] 135 7e-30
ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arab... 134 1e-29
gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana] 134 1e-29
dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana] 134 2e-29
ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Caps... 133 3e-29
ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis th... 132 4e-29
>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein,
chloroplast, putative [Ricinus communis]
Length = 280
Score = 175 bits (443), Expect = 6e-42
Identities = 105/160 (65%), Positives = 111/160 (69%), Gaps = 8/160 (5%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLG------QQQPFSS- 217
LVLPSLNPKTL LCNPNKP SL F HAKP+S+ SL QQQP+SS
Sbjct: 9 LVLPSLNPKTLSLCNPNKPISLSF--------KLHAKPISIPSSLFSSFVPLQQQPYSSS 60
Query: 218 -RFVANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFE 394
RFV +VAISSEFGQ DLKLFVGNLPF+VDSAQLAGLFE
Sbjct: 61 SRFVPSVAISSEFGQEEDVSSDGDESSFSQ-------DLKLFVGNLPFNVDSAQLAGLFE 113
Query: 395 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
SAGNVEMVEVIYDKVTGRSRGFGFVTMS+ EVEAAAQQF
Sbjct: 114 SAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQF 153
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/57 (54%), Positives = 41/57 (71%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+L+VGNL +SVD+ L F G V +V+YD+ +GRSRGFGFVT S+A+EVE A
Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENA 253
>gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus persica]
Length = 298
Score = 162 bits (409), Expect = 6e-38
Identities = 98/154 (63%), Positives = 106/154 (68%), Gaps = 3/154 (1%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSL---GQQQPFSSRFVA 229
L LPSL PKTL L P KPTS+ F S +SSSLT KP+S+S S G+ Q SSRFV
Sbjct: 30 LALPSLYPKTLALYTP-KPTSVPFYSVSSSSLTLGCKPISISASFLNSGRFQSASSRFVR 88
Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409
NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFESAGNV
Sbjct: 89 NVAVSSEFEQDEEVLSDDGEASFAP-------DLKLFVGNLPFSVDSAQLAGLFESAGNV 141
Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511
EMVEVIYDK TGRSRGFGFVTMS+ QE E AA+Q
Sbjct: 142 EMVEVIYDKTTGRSRGFGFVTMSSVQEAEGAARQ 175
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508
+L+VGNL + VD+ L LF G V +V+YD+ +GRSRGFGFVT TA E+ +A +
Sbjct: 215 RLYVGNLAWGVDNLALENLFSEQGKVLEAKVVYDRDSGRSRGFGFVTYGTADEMNSAME 273
>ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|222868100|gb|EEF05231.1|
29 kDa ribonucleoprotein [Populus trichocarpa]
Length = 273
Score = 160 bits (406), Expect = 1e-37
Identities = 96/153 (62%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLG-QQQPFSSRFVANV 235
LVLPSLN +KP SLFF+SP+S+S KPVSL S QQQP SSRF+ NV
Sbjct: 9 LVLPSLNHPNTIKSFYSKPNSLFFLSPSSTS---SLKPVSLLLSFQHQQQPLSSRFLKNV 65
Query: 236 AISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEM 415
AISSEFGQ DLKLFVGNLPF+VDSA+LAGLFE+AGNVEM
Sbjct: 66 AISSEFGQEEDFLSDGDEQSFSQ-------DLKLFVGNLPFNVDSARLAGLFETAGNVEM 118
Query: 416 VEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
VEVIYDKVTGRSRGFGFVTM+T +EVEAA++QF
Sbjct: 119 VEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQF 151
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/57 (50%), Positives = 42/57 (73%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL ++VD+ L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 190 RVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNA 246
>gb|ESR42011.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
Length = 282
Score = 156 bits (395), Expect = 2e-36
Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV
Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66
Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119
Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254
>gb|ESR42010.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
Length = 266
Score = 156 bits (395), Expect = 2e-36
Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV
Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66
Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119
Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511
+++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDS 257
Query: 512 FMAMTR 529
+ R
Sbjct: 258 LNGVVR 263
>gb|ESR42009.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
Length = 263
Score = 156 bits (395), Expect = 2e-36
Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV
Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66
Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119
Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254
>gb|ESR42008.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
Length = 271
Score = 156 bits (395), Expect = 2e-36
Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV
Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66
Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119
Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQE 490
+++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+E
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEE 250
>gb|ESR42007.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
Length = 297
Score = 156 bits (395), Expect = 2e-36
Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV
Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66
Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119
Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254
>ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|550336149|gb|ERP59243.1|
29 kDa ribonucleoprotein [Populus trichocarpa]
Length = 286
Score = 147 bits (372), Expect = 1e-33
Identities = 92/154 (59%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSL--SHSLGQQQPFSSRFVAN 232
LVLPSLN +KPTSL F+S +S+S KP SL S QQQP SSRF+ +
Sbjct: 9 LVLPSLNHPNTIKSFYSKPTSLSFLSLSSTS---SIKPASLFLSFQQKQQQPLSSRFLKS 65
Query: 233 VAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVE 412
VAISSEFGQ DL+LFVGNLPF+V+SAQLA LF+SAGNVE
Sbjct: 66 VAISSEFGQEEDVFGDGDEPSFSP-------DLQLFVGNLPFNVNSAQLADLFKSAGNVE 118
Query: 413 MVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
MVEV YDKVTGRSRGFGFVTMST +EVEAA+QQF
Sbjct: 119 MVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQF 152
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/57 (50%), Positives = 42/57 (73%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL ++VD + L LF G V +V+YD+ +GRS+GFGFVT S+A+EVE A
Sbjct: 203 RVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDA 259
>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 147 bits (372), Expect = 1e-33
Identities = 94/155 (60%), Positives = 106/155 (68%), Gaps = 3/155 (1%)
Frame = +2
Query: 59 LVLPSLN-PKTLFLCNPNKPTSL-FFVSPNS-SSLTFHAKPVSLSHSLGQQQPFSSRFVA 229
LVLPSL+ PKTL + +KPTS+ FF P S SSL H+ +SLS S SSRFV
Sbjct: 7 LVLPSLSLPKTLAI---SKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFVR 63
Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409
NVA+SS++ Q DLKLFVGNLPF+VDSA LAGLFE AGNV
Sbjct: 64 NVAVSSDYEQDEDVLSDEGEPSFSP-------DLKLFVGNLPFNVDSAGLAGLFEQAGNV 116
Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
EMVEVIYDK+TGRSRGFGFVTMST +EVEAAAQQF
Sbjct: 117 EMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQF 151
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508
+++VGNL + VD L LF G V VIYD+ TGRSRGFGFVT ++A+EV A +
Sbjct: 205 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIE 263
>ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29
kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 145 bits (367), Expect = 4e-33
Identities = 91/156 (58%), Positives = 101/156 (64%), Gaps = 4/156 (2%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQ----PFSSRFV 226
L LPSL KTL NP LF ++P SSS+ + P+S+S L PFSSRFV
Sbjct: 8 LTLPSLTLKTLSSSNPK--FKLFSLNP-SSSIRLLSNPISISSFLLPSHRVSPPFSSRFV 64
Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
NVA+SS++GQ DLKLFVGNLPF+VDSAQLAGLFESAG
Sbjct: 65 RNVAVSSDYGQEEGTLEVDGDDSSYAP------DLKLFVGNLPFTVDSAQLAGLFESAGQ 118
Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
VE VEVIYDK TGRSRGFGFVTMST EVEAAAQQF
Sbjct: 119 VERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQF 154
Score = 58.9 bits (141), Expect = 7e-07
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508
++ V NL + VD L LF GNV +V+YD+ +G+SRGFGFVT ++A+EV A Q
Sbjct: 194 RVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQ 252
>ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Fragaria
vesca subsp. vesca]
Length = 277
Score = 139 bits (349), Expect = 5e-31
Identities = 89/152 (58%), Positives = 100/152 (65%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
LVLPSL PKTL L +P KPTS+ S +S S KP+S+S S S FV +VA
Sbjct: 8 LVLPSLTPKTLALYSP-KPTSVSLFSLSSFS---SLKPISISASFLSSGKASRSFVRHVA 63
Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
+S +F Q DLKLFVGNLPF+VDSAQLA LFE AGNVEMV
Sbjct: 64 VS-DFEQDEEVLSGDEAEPNFSP------DLKLFVGNLPFTVDSAQLAELFEGAGNVEMV 116
Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
EVIYDK TGRSRGFGFVTMS+AQEVEAAA+QF
Sbjct: 117 EVIYDKTTGRSRGFGFVTMSSAQEVEAAARQF 148
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511
+L+VGNL + VD+ L LF G V +V++D+ +GRSRGFGFVT +A+E+ +A +
Sbjct: 193 RLYVGNLAWGVDNLALENLFNEQGKVLEAKVVFDRDSGRSRGFGFVTYGSAEEMNSAIES 252
Query: 512 FMAMTRG 532
+ G
Sbjct: 253 LDGVDLG 259
>ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
Length = 363
Score = 135 bits (339), Expect = 7e-30
Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Frame = +2
Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223
L + NPK+L LC ++P S+ + P SL+F H + S +L P + SRF
Sbjct: 8 LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63
Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403
V NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAG
Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123
Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 335
>ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa
ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29
protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160
[Arabidopsis thaliana] gi|18655393|gb|AAL76152.1|
AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29
protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
Length = 342
Score = 135 bits (339), Expect = 7e-30
Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Frame = +2
Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223
L + NPK+L LC ++P S+ + P SL+F H + S +L P + SRF
Sbjct: 8 LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63
Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403
V NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAG
Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123
Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
>dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 135 bits (339), Expect = 7e-30
Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Frame = +2
Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223
L + NPK+L LC ++P S+ + P SL+F H + S +L P + SRF
Sbjct: 8 LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63
Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403
V NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAG
Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123
Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 306
>ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata] gi|297327336|gb|EFH57756.1| hypothetical protein
ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 134 bits (337), Expect = 1e-29
Identities = 85/152 (55%), Positives = 97/152 (63%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
L L S NPK+L C ++P S+ + P S S ++ VS S + P +SRFV NVA
Sbjct: 8 LALSSFNPKSLPFC-VSRPASVSLLPP-SLSFKLNSDSVSFSIAAKWNSP-ASRFVRNVA 64
Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
I+SEF DLKLFVGNLPF+VDSAQLA LFESAGNVEMV
Sbjct: 65 ITSEF----EVEEDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120
Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
EVIYDKVTGRSRGFGFVTMS+ EVEAAA QF
Sbjct: 121 EVIYDKVTGRSRGFGFVTMSSVSEVEAAANQF 152
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT +++QEV+ A
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNA 261
>gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 134 bits (337), Expect = 1e-29
Identities = 85/152 (55%), Positives = 98/152 (64%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
L L S NPK+L ++P S+ +SP S S ++ VS S + P +SRFV NVA
Sbjct: 8 LALSSFNPKSLPF-GVSRPASVSLLSP-SLSFKLNSDSVSFSIAAKWNSP-ASRFVRNVA 64
Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
I+SEF DLKLFVGNLPF+VDSAQLA LFESAGNVEMV
Sbjct: 65 ITSEF----EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120
Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
EVIYDK+TGRSRGFGFVTMS+ EVEAAAQQF
Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT ++QEV+ A
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
>dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 134 bits (336), Expect = 2e-29
Identities = 85/155 (54%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Frame = +2
Query: 71 SLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRFVA 229
+ NPK+L LC ++P S+ + P SL+F H + S +L P + SRFV
Sbjct: 2 AFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRFVR 57
Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409
NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAGNV
Sbjct: 58 NVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNV 117
Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
EMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 118 EMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 152
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 242 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 298
>ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Capsella rubella]
gi|482560193|gb|EOA24384.1| hypothetical protein
CARUB_v10017634mg [Capsella rubella]
Length = 327
Score = 133 bits (334), Expect = 3e-29
Identities = 85/150 (56%), Positives = 96/150 (64%)
Frame = +2
Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVAIS 244
L + NPK+L L + ++P SL + P+ S VSL S + SSRFV NVA+S
Sbjct: 8 LSAFNPKSLPL-SVSRPASLSVLPPSLSFKLHSDHLVSLFASSSLK--CSSRFVRNVAVS 64
Query: 245 SEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMVEV 424
S+F DLKLFVGNL F+VDSAQLA LFESAGNVEMVEV
Sbjct: 65 SDFEVEEDDMFADGDDSAPVERTSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 124
Query: 425 IYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
IYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 125 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 154
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+L+VGNL + VD L +F G V VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 243 RLYVGNLSWGVDDMALENMFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 299
>ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName:
Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor gi|13877809|gb|AAK43982.1|AF370167_1 putative
RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|15081717|gb|AAK82513.1|
At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|20197716|gb|AAM15222.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| chloroplast RNA binding
protein [Arabidopsis thaliana]
Length = 289
Score = 132 bits (333), Expect = 4e-29
Identities = 84/152 (55%), Positives = 97/152 (63%)
Frame = +2
Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
L L S NPK+L ++P S+ +SP S S ++ VS S + P +SRF NVA
Sbjct: 8 LALSSFNPKSLPF-GVSRPASVSLLSP-SLSFKLNSDSVSFSIAAKWNSP-ASRFARNVA 64
Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
I+SEF DLKLFVGNLPF+VDSAQLA LFESAGNVEMV
Sbjct: 65 ITSEF----EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120
Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
EVIYDK+TGRSRGFGFVTMS+ EVEAAAQQF
Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +2
Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT ++QEV+ A
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261