BLASTX nr result

ID: Jatropha_contig00008943 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00008943
         (537 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri...   175   6e-42
gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus pe...   162   6e-38
ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|2...   160   1e-37
gb|ESR42011.1| hypothetical protein CICLE_v10012331mg [Citrus cl...   156   2e-36
gb|ESR42010.1| hypothetical protein CICLE_v10012331mg [Citrus cl...   156   2e-36
gb|ESR42009.1| hypothetical protein CICLE_v10012331mg [Citrus cl...   156   2e-36
gb|ESR42008.1| hypothetical protein CICLE_v10012331mg [Citrus cl...   156   2e-36
gb|ESR42007.1| hypothetical protein CICLE_v10012331mg [Citrus cl...   156   2e-36
ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|5...   147   1e-33
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   147   1e-33
ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop...   145   4e-33
ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chlor...   139   5e-31
ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidop...   135   7e-30
ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis...   135   7e-30
dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]       135   7e-30
ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arab...   134   1e-29
gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]    134   1e-29
dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]       134   2e-29
ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Caps...   133   3e-29
ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis th...   132   4e-29

>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223541388|gb|EEF42939.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 280

 Score =  175 bits (443), Expect = 6e-42
 Identities = 105/160 (65%), Positives = 111/160 (69%), Gaps = 8/160 (5%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLG------QQQPFSS- 217
           LVLPSLNPKTL LCNPNKP SL F          HAKP+S+  SL       QQQP+SS 
Sbjct: 9   LVLPSLNPKTLSLCNPNKPISLSF--------KLHAKPISIPSSLFSSFVPLQQQPYSSS 60

Query: 218 -RFVANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFE 394
            RFV +VAISSEFGQ                      DLKLFVGNLPF+VDSAQLAGLFE
Sbjct: 61  SRFVPSVAISSEFGQEEDVSSDGDESSFSQ-------DLKLFVGNLPFNVDSAQLAGLFE 113

Query: 395 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           SAGNVEMVEVIYDKVTGRSRGFGFVTMS+  EVEAAAQQF
Sbjct: 114 SAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQF 153



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 31/57 (54%), Positives = 41/57 (71%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +L+VGNL +SVD+  L   F   G V   +V+YD+ +GRSRGFGFVT S+A+EVE A
Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENA 253


>gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus persica]
          Length = 298

 Score =  162 bits (409), Expect = 6e-38
 Identities = 98/154 (63%), Positives = 106/154 (68%), Gaps = 3/154 (1%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSL---GQQQPFSSRFVA 229
           L LPSL PKTL L  P KPTS+ F S +SSSLT   KP+S+S S    G+ Q  SSRFV 
Sbjct: 30  LALPSLYPKTLALYTP-KPTSVPFYSVSSSSLTLGCKPISISASFLNSGRFQSASSRFVR 88

Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409
           NVA+SSEF Q                      DLKLFVGNLPFSVDSAQLAGLFESAGNV
Sbjct: 89  NVAVSSEFEQDEEVLSDDGEASFAP-------DLKLFVGNLPFSVDSAQLAGLFESAGNV 141

Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511
           EMVEVIYDK TGRSRGFGFVTMS+ QE E AA+Q
Sbjct: 142 EMVEVIYDKTTGRSRGFGFVTMSSVQEAEGAARQ 175



 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 29/59 (49%), Positives = 40/59 (67%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508
           +L+VGNL + VD+  L  LF   G V   +V+YD+ +GRSRGFGFVT  TA E+ +A +
Sbjct: 215 RLYVGNLAWGVDNLALENLFSEQGKVLEAKVVYDRDSGRSRGFGFVTYGTADEMNSAME 273


>ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|222868100|gb|EEF05231.1|
           29 kDa ribonucleoprotein [Populus trichocarpa]
          Length = 273

 Score =  160 bits (406), Expect = 1e-37
 Identities = 96/153 (62%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLG-QQQPFSSRFVANV 235
           LVLPSLN         +KP SLFF+SP+S+S     KPVSL  S   QQQP SSRF+ NV
Sbjct: 9   LVLPSLNHPNTIKSFYSKPNSLFFLSPSSTS---SLKPVSLLLSFQHQQQPLSSRFLKNV 65

Query: 236 AISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEM 415
           AISSEFGQ                      DLKLFVGNLPF+VDSA+LAGLFE+AGNVEM
Sbjct: 66  AISSEFGQEEDFLSDGDEQSFSQ-------DLKLFVGNLPFNVDSARLAGLFETAGNVEM 118

Query: 416 VEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           VEVIYDKVTGRSRGFGFVTM+T +EVEAA++QF
Sbjct: 119 VEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQF 151



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 29/57 (50%), Positives = 42/57 (73%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL ++VD+  L  LF   G V   +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 190 RVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNA 246


>gb|ESR42011.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
          Length = 282

 Score =  156 bits (395), Expect = 2e-36
 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
           LVLPSL+PKTL   N +KPTS   +S +SSS    AKP+S+S    HS        SRFV
Sbjct: 9   LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66

Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
            NVA+SSEF Q                      DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67  RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119

Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254


>gb|ESR42010.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
          Length = 266

 Score =  156 bits (395), Expect = 2e-36
 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
           LVLPSL+PKTL   N +KPTS   +S +SSS    AKP+S+S    HS        SRFV
Sbjct: 9   LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66

Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
            NVA+SSEF Q                      DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67  RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119

Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511
           +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT S+A+EV+ A   
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDS 257

Query: 512 FMAMTR 529
              + R
Sbjct: 258 LNGVVR 263


>gb|ESR42009.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
          Length = 263

 Score =  156 bits (395), Expect = 2e-36
 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
           LVLPSL+PKTL   N +KPTS   +S +SSS    AKP+S+S    HS        SRFV
Sbjct: 9   LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66

Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
            NVA+SSEF Q                      DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67  RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119

Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254


>gb|ESR42008.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
          Length = 271

 Score =  156 bits (395), Expect = 2e-36
 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
           LVLPSL+PKTL   N +KPTS   +S +SSS    AKP+S+S    HS        SRFV
Sbjct: 9   LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66

Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
            NVA+SSEF Q                      DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67  RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119

Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQE 490
           +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT S+A+E
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEE 250


>gb|ESR42007.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
          Length = 297

 Score =  156 bits (395), Expect = 2e-36
 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226
           LVLPSL+PKTL   N +KPTS   +S +SSS    AKP+S+S    HS        SRFV
Sbjct: 9   LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66

Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
            NVA+SSEF Q                      DLKLFVGNLPFSVDSAQLAGLFE+AGN
Sbjct: 67  RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119

Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF
Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT S+A+EV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254


>ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|550336149|gb|ERP59243.1|
           29 kDa ribonucleoprotein [Populus trichocarpa]
          Length = 286

 Score =  147 bits (372), Expect = 1e-33
 Identities = 92/154 (59%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSL--SHSLGQQQPFSSRFVAN 232
           LVLPSLN         +KPTSL F+S +S+S     KP SL  S    QQQP SSRF+ +
Sbjct: 9   LVLPSLNHPNTIKSFYSKPTSLSFLSLSSTS---SIKPASLFLSFQQKQQQPLSSRFLKS 65

Query: 233 VAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVE 412
           VAISSEFGQ                      DL+LFVGNLPF+V+SAQLA LF+SAGNVE
Sbjct: 66  VAISSEFGQEEDVFGDGDEPSFSP-------DLQLFVGNLPFNVNSAQLADLFKSAGNVE 118

Query: 413 MVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           MVEV YDKVTGRSRGFGFVTMST +EVEAA+QQF
Sbjct: 119 MVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQF 152



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 29/57 (50%), Positives = 42/57 (73%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL ++VD + L  LF   G V   +V+YD+ +GRS+GFGFVT S+A+EVE A
Sbjct: 203 RVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDA 259


>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
           vinifera]
          Length = 288

 Score =  147 bits (372), Expect = 1e-33
 Identities = 94/155 (60%), Positives = 106/155 (68%), Gaps = 3/155 (1%)
 Frame = +2

Query: 59  LVLPSLN-PKTLFLCNPNKPTSL-FFVSPNS-SSLTFHAKPVSLSHSLGQQQPFSSRFVA 229
           LVLPSL+ PKTL +   +KPTS+ FF  P S SSL  H+  +SLS S       SSRFV 
Sbjct: 7   LVLPSLSLPKTLAI---SKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFVR 63

Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409
           NVA+SS++ Q                      DLKLFVGNLPF+VDSA LAGLFE AGNV
Sbjct: 64  NVAVSSDYEQDEDVLSDEGEPSFSP-------DLKLFVGNLPFNVDSAGLAGLFEQAGNV 116

Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           EMVEVIYDK+TGRSRGFGFVTMST +EVEAAAQQF
Sbjct: 117 EMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQF 151



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 30/59 (50%), Positives = 39/59 (66%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508
           +++VGNL + VD   L  LF   G V    VIYD+ TGRSRGFGFVT ++A+EV  A +
Sbjct: 205 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIE 263


>ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29
           kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 278

 Score =  145 bits (367), Expect = 4e-33
 Identities = 91/156 (58%), Positives = 101/156 (64%), Gaps = 4/156 (2%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQ----PFSSRFV 226
           L LPSL  KTL   NP     LF ++P SSS+   + P+S+S  L        PFSSRFV
Sbjct: 8   LTLPSLTLKTLSSSNPK--FKLFSLNP-SSSIRLLSNPISISSFLLPSHRVSPPFSSRFV 64

Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406
            NVA+SS++GQ                      DLKLFVGNLPF+VDSAQLAGLFESAG 
Sbjct: 65  RNVAVSSDYGQEEGTLEVDGDDSSYAP------DLKLFVGNLPFTVDSAQLAGLFESAGQ 118

Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           VE VEVIYDK TGRSRGFGFVTMST  EVEAAAQQF
Sbjct: 119 VERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQF 154



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 28/59 (47%), Positives = 39/59 (66%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508
           ++ V NL + VD   L  LF   GNV   +V+YD+ +G+SRGFGFVT ++A+EV  A Q
Sbjct: 194 RVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQ 252


>ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Fragaria
           vesca subsp. vesca]
          Length = 277

 Score =  139 bits (349), Expect = 5e-31
 Identities = 89/152 (58%), Positives = 100/152 (65%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
           LVLPSL PKTL L +P KPTS+   S +S S     KP+S+S S       S  FV +VA
Sbjct: 8   LVLPSLTPKTLALYSP-KPTSVSLFSLSSFS---SLKPISISASFLSSGKASRSFVRHVA 63

Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
           +S +F Q                      DLKLFVGNLPF+VDSAQLA LFE AGNVEMV
Sbjct: 64  VS-DFEQDEEVLSGDEAEPNFSP------DLKLFVGNLPFTVDSAQLAELFEGAGNVEMV 116

Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           EVIYDK TGRSRGFGFVTMS+AQEVEAAA+QF
Sbjct: 117 EVIYDKTTGRSRGFGFVTMSSAQEVEAAARQF 148



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 28/67 (41%), Positives = 43/67 (64%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511
           +L+VGNL + VD+  L  LF   G V   +V++D+ +GRSRGFGFVT  +A+E+ +A + 
Sbjct: 193 RLYVGNLAWGVDNLALENLFNEQGKVLEAKVVFDRDSGRSRGFGFVTYGSAEEMNSAIES 252

Query: 512 FMAMTRG 532
              +  G
Sbjct: 253 LDGVDLG 259


>ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
           gi|332645571|gb|AEE79092.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
          Length = 363

 Score =  135 bits (339), Expect = 7e-30
 Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
 Frame = +2

Query: 65  LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223
           L + NPK+L LC  ++P S+  + P   SL+F     H   +  S +L    P  + SRF
Sbjct: 8   LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63

Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403
           V NVA+SS+F                        DLKLFVGNL F+VDSAQLA LFESAG
Sbjct: 64  VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123

Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 30/57 (52%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +L+VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 335


>ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
           gi|186511018|ref|NP_850692.2| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa
           ribonucleoprotein, chloroplastic; AltName:
           Full=RNA-binding protein cp29; Flags: Precursor
           gi|6729497|emb|CAB67653.1| RNA-binding protein cp29
           protein [Arabidopsis thaliana]
           gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160
           [Arabidopsis thaliana] gi|18655393|gb|AAL76152.1|
           AT3g53460/F4P12_160 [Arabidopsis thaliana]
           gi|21593426|gb|AAM65393.1| RNA-binding protein cp29
           protein [Arabidopsis thaliana]
           gi|332645568|gb|AEE79089.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|332645569|gb|AEE79090.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|332645570|gb|AEE79091.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
          Length = 342

 Score =  135 bits (339), Expect = 7e-30
 Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
 Frame = +2

Query: 65  LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223
           L + NPK+L LC  ++P S+  + P   SL+F     H   +  S +L    P  + SRF
Sbjct: 8   LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63

Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403
           V NVA+SS+F                        DLKLFVGNL F+VDSAQLA LFESAG
Sbjct: 64  VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123

Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 30/57 (52%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +L+VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314


>dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
          Length = 334

 Score =  135 bits (339), Expect = 7e-30
 Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
 Frame = +2

Query: 65  LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223
           L + NPK+L LC  ++P S+  + P   SL+F     H   +  S +L    P  + SRF
Sbjct: 8   LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63

Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403
           V NVA+SS+F                        DLKLFVGNL F+VDSAQLA LFESAG
Sbjct: 64  VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123

Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 30/57 (52%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +L+VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 306


>ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
           lyrata] gi|297327336|gb|EFH57756.1| hypothetical protein
           ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata]
          Length = 289

 Score =  134 bits (337), Expect = 1e-29
 Identities = 85/152 (55%), Positives = 97/152 (63%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
           L L S NPK+L  C  ++P S+  + P S S   ++  VS S +     P +SRFV NVA
Sbjct: 8   LALSSFNPKSLPFC-VSRPASVSLLPP-SLSFKLNSDSVSFSIAAKWNSP-ASRFVRNVA 64

Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
           I+SEF                        DLKLFVGNLPF+VDSAQLA LFESAGNVEMV
Sbjct: 65  ITSEF----EVEEDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120

Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           EVIYDKVTGRSRGFGFVTMS+  EVEAAA QF
Sbjct: 121 EVIYDKVTGRSRGFGFVTMSSVSEVEAAANQF 152



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT +++QEV+ A
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNA 261


>gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
          Length = 289

 Score =  134 bits (337), Expect = 1e-29
 Identities = 85/152 (55%), Positives = 98/152 (64%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
           L L S NPK+L     ++P S+  +SP S S   ++  VS S +     P +SRFV NVA
Sbjct: 8   LALSSFNPKSLPF-GVSRPASVSLLSP-SLSFKLNSDSVSFSIAAKWNSP-ASRFVRNVA 64

Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
           I+SEF                        DLKLFVGNLPF+VDSAQLA LFESAGNVEMV
Sbjct: 65  ITSEF----EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120

Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           EVIYDK+TGRSRGFGFVTMS+  EVEAAAQQF
Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT  ++QEV+ A
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261


>dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
          Length = 326

 Score =  134 bits (336), Expect = 2e-29
 Identities = 85/155 (54%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
 Frame = +2

Query: 71  SLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRFVA 229
           + NPK+L LC  ++P S+  + P   SL+F     H   +  S +L    P  + SRFV 
Sbjct: 2   AFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRFVR 57

Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409
           NVA+SS+F                        DLKLFVGNL F+VDSAQLA LFESAGNV
Sbjct: 58  NVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNV 117

Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           EMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 118 EMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 152



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 30/57 (52%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +L+VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 242 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 298


>ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Capsella rubella]
           gi|482560193|gb|EOA24384.1| hypothetical protein
           CARUB_v10017634mg [Capsella rubella]
          Length = 327

 Score =  133 bits (334), Expect = 3e-29
 Identities = 85/150 (56%), Positives = 96/150 (64%)
 Frame = +2

Query: 65  LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVAIS 244
           L + NPK+L L + ++P SL  + P+ S        VSL  S   +   SSRFV NVA+S
Sbjct: 8   LSAFNPKSLPL-SVSRPASLSVLPPSLSFKLHSDHLVSLFASSSLK--CSSRFVRNVAVS 64

Query: 245 SEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMVEV 424
           S+F                        DLKLFVGNL F+VDSAQLA LFESAGNVEMVEV
Sbjct: 65  SDFEVEEDDMFADGDDSAPVERTSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 124

Query: 425 IYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           IYDKVTGRSRGFGFVTMSTA EVEAAAQQF
Sbjct: 125 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 154



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +L+VGNL + VD   L  +F   G V    VIYD+ +GRS+GFGFVT+S++QEV+ A
Sbjct: 243 RLYVGNLSWGVDDMALENMFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 299


>ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis thaliana]
           gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName:
           Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
           Precursor gi|13877809|gb|AAK43982.1|AF370167_1 putative
           RNA-binding protein [Arabidopsis thaliana]
           gi|4056477|gb|AAC98043.1| putative RNA-binding protein
           [Arabidopsis thaliana] gi|15081717|gb|AAK82513.1|
           At2g37220/F3G5.1 [Arabidopsis thaliana]
           gi|16323482|gb|AAL15235.1| putative RNA-binding protein
           [Arabidopsis thaliana] gi|20197716|gb|AAM15222.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|330254275|gb|AEC09369.1| chloroplast RNA binding
           protein [Arabidopsis thaliana]
          Length = 289

 Score =  132 bits (333), Expect = 4e-29
 Identities = 84/152 (55%), Positives = 97/152 (63%)
 Frame = +2

Query: 59  LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238
           L L S NPK+L     ++P S+  +SP S S   ++  VS S +     P +SRF  NVA
Sbjct: 8   LALSSFNPKSLPF-GVSRPASVSLLSP-SLSFKLNSDSVSFSIAAKWNSP-ASRFARNVA 64

Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418
           I+SEF                        DLKLFVGNLPF+VDSAQLA LFESAGNVEMV
Sbjct: 65  ITSEF----EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120

Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514
           EVIYDK+TGRSRGFGFVTMS+  EVEAAAQQF
Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +2

Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502
           +++VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT  ++QEV+ A
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261


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