BLASTX nr result
ID: Jatropha_contig00008943
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Jatropha_contig00008943 (537 letters) Database: NCBI-nr (updated 2014/02/11) 35,149,712 sequences; 12,374,887,350 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri... 175 6e-42 gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus pe... 162 6e-38 ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|2... 160 1e-37 gb|ESR42011.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36 gb|ESR42010.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36 gb|ESR42009.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36 gb|ESR42008.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36 gb|ESR42007.1| hypothetical protein CICLE_v10012331mg [Citrus cl... 156 2e-36 ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|5... 147 1e-33 ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 147 1e-33 ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop... 145 4e-33 ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chlor... 139 5e-31 ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidop... 135 7e-30 ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis... 135 7e-30 dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana] 135 7e-30 ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arab... 134 1e-29 gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana] 134 1e-29 dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana] 134 2e-29 ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Caps... 133 3e-29 ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis th... 132 4e-29 >ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis] gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis] Length = 280 Score = 175 bits (443), Expect = 6e-42 Identities = 105/160 (65%), Positives = 111/160 (69%), Gaps = 8/160 (5%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLG------QQQPFSS- 217 LVLPSLNPKTL LCNPNKP SL F HAKP+S+ SL QQQP+SS Sbjct: 9 LVLPSLNPKTLSLCNPNKPISLSF--------KLHAKPISIPSSLFSSFVPLQQQPYSSS 60 Query: 218 -RFVANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFE 394 RFV +VAISSEFGQ DLKLFVGNLPF+VDSAQLAGLFE Sbjct: 61 SRFVPSVAISSEFGQEEDVSSDGDESSFSQ-------DLKLFVGNLPFNVDSAQLAGLFE 113 Query: 395 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 SAGNVEMVEVIYDKVTGRSRGFGFVTMS+ EVEAAAQQF Sbjct: 114 SAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQF 153 Score = 64.7 bits (156), Expect = 1e-08 Identities = 31/57 (54%), Positives = 41/57 (71%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +L+VGNL +SVD+ L F G V +V+YD+ +GRSRGFGFVT S+A+EVE A Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENA 253 >gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus persica] Length = 298 Score = 162 bits (409), Expect = 6e-38 Identities = 98/154 (63%), Positives = 106/154 (68%), Gaps = 3/154 (1%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSL---GQQQPFSSRFVA 229 L LPSL PKTL L P KPTS+ F S +SSSLT KP+S+S S G+ Q SSRFV Sbjct: 30 LALPSLYPKTLALYTP-KPTSVPFYSVSSSSLTLGCKPISISASFLNSGRFQSASSRFVR 88 Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409 NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFESAGNV Sbjct: 89 NVAVSSEFEQDEEVLSDDGEASFAP-------DLKLFVGNLPFSVDSAQLAGLFESAGNV 141 Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511 EMVEVIYDK TGRSRGFGFVTMS+ QE E AA+Q Sbjct: 142 EMVEVIYDKTTGRSRGFGFVTMSSVQEAEGAARQ 175 Score = 62.0 bits (149), Expect = 8e-08 Identities = 29/59 (49%), Positives = 40/59 (67%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508 +L+VGNL + VD+ L LF G V +V+YD+ +GRSRGFGFVT TA E+ +A + Sbjct: 215 RLYVGNLAWGVDNLALENLFSEQGKVLEAKVVYDRDSGRSRGFGFVTYGTADEMNSAME 273 >ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|222868100|gb|EEF05231.1| 29 kDa ribonucleoprotein [Populus trichocarpa] Length = 273 Score = 160 bits (406), Expect = 1e-37 Identities = 96/153 (62%), Positives = 108/153 (70%), Gaps = 1/153 (0%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLG-QQQPFSSRFVANV 235 LVLPSLN +KP SLFF+SP+S+S KPVSL S QQQP SSRF+ NV Sbjct: 9 LVLPSLNHPNTIKSFYSKPNSLFFLSPSSTS---SLKPVSLLLSFQHQQQPLSSRFLKNV 65 Query: 236 AISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEM 415 AISSEFGQ DLKLFVGNLPF+VDSA+LAGLFE+AGNVEM Sbjct: 66 AISSEFGQEEDFLSDGDEQSFSQ-------DLKLFVGNLPFNVDSARLAGLFETAGNVEM 118 Query: 416 VEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 VEVIYDKVTGRSRGFGFVTM+T +EVEAA++QF Sbjct: 119 VEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQF 151 Score = 61.6 bits (148), Expect = 1e-07 Identities = 29/57 (50%), Positives = 42/57 (73%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL ++VD+ L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A Sbjct: 190 RVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNA 246 >gb|ESR42011.1| hypothetical protein CICLE_v10012331mg [Citrus clementina] Length = 282 Score = 156 bits (395), Expect = 2e-36 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226 LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66 Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406 NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119 Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 Score = 61.2 bits (147), Expect = 1e-07 Identities = 29/57 (50%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254 >gb|ESR42010.1| hypothetical protein CICLE_v10012331mg [Citrus clementina] Length = 266 Score = 156 bits (395), Expect = 2e-36 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226 LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66 Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406 NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119 Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 Score = 62.4 bits (150), Expect = 6e-08 Identities = 30/66 (45%), Positives = 42/66 (63%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511 +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDS 257 Query: 512 FMAMTR 529 + R Sbjct: 258 LNGVVR 263 >gb|ESR42009.1| hypothetical protein CICLE_v10012331mg [Citrus clementina] Length = 263 Score = 156 bits (395), Expect = 2e-36 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226 LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66 Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406 NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119 Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 Score = 61.2 bits (147), Expect = 1e-07 Identities = 29/57 (50%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254 >gb|ESR42008.1| hypothetical protein CICLE_v10012331mg [Citrus clementina] Length = 271 Score = 156 bits (395), Expect = 2e-36 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226 LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66 Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406 NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119 Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 Score = 58.2 bits (139), Expect = 1e-06 Identities = 27/53 (50%), Positives = 37/53 (69%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQE 490 +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+E Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEE 250 >gb|ESR42007.1| hypothetical protein CICLE_v10012331mg [Citrus clementina] Length = 297 Score = 156 bits (395), Expect = 2e-36 Identities = 97/156 (62%), Positives = 107/156 (68%), Gaps = 4/156 (2%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLS----HSLGQQQPFSSRFV 226 LVLPSL+PKTL N +KPTS +S +SSS AKP+S+S HS SRFV Sbjct: 9 LVLPSLSPKTLAFYN-SKPTSFSLLS-SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV 66 Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406 NVA+SSEF Q DLKLFVGNLPFSVDSAQLAGLFE+AGN Sbjct: 67 RNVAVSSEFDQEEDLLSDEDGSNFSP-------DLKLFVGNLPFSVDSAQLAGLFETAGN 119 Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 VEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQF Sbjct: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 Score = 61.2 bits (147), Expect = 1e-07 Identities = 29/57 (50%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT S+A+EV+ A Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNA 254 >ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|550336149|gb|ERP59243.1| 29 kDa ribonucleoprotein [Populus trichocarpa] Length = 286 Score = 147 bits (372), Expect = 1e-33 Identities = 92/154 (59%), Positives = 104/154 (67%), Gaps = 2/154 (1%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSL--SHSLGQQQPFSSRFVAN 232 LVLPSLN +KPTSL F+S +S+S KP SL S QQQP SSRF+ + Sbjct: 9 LVLPSLNHPNTIKSFYSKPTSLSFLSLSSTS---SIKPASLFLSFQQKQQQPLSSRFLKS 65 Query: 233 VAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVE 412 VAISSEFGQ DL+LFVGNLPF+V+SAQLA LF+SAGNVE Sbjct: 66 VAISSEFGQEEDVFGDGDEPSFSP-------DLQLFVGNLPFNVNSAQLADLFKSAGNVE 118 Query: 413 MVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 MVEV YDKVTGRSRGFGFVTMST +EVEAA+QQF Sbjct: 119 MVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQF 152 Score = 62.8 bits (151), Expect = 5e-08 Identities = 29/57 (50%), Positives = 42/57 (73%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL ++VD + L LF G V +V+YD+ +GRS+GFGFVT S+A+EVE A Sbjct: 203 RVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDA 259 >ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis vinifera] Length = 288 Score = 147 bits (372), Expect = 1e-33 Identities = 94/155 (60%), Positives = 106/155 (68%), Gaps = 3/155 (1%) Frame = +2 Query: 59 LVLPSLN-PKTLFLCNPNKPTSL-FFVSPNS-SSLTFHAKPVSLSHSLGQQQPFSSRFVA 229 LVLPSL+ PKTL + +KPTS+ FF P S SSL H+ +SLS S SSRFV Sbjct: 7 LVLPSLSLPKTLAI---SKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFVR 63 Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409 NVA+SS++ Q DLKLFVGNLPF+VDSA LAGLFE AGNV Sbjct: 64 NVAVSSDYEQDEDVLSDEGEPSFSP-------DLKLFVGNLPFNVDSAGLAGLFEQAGNV 116 Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 EMVEVIYDK+TGRSRGFGFVTMST +EVEAAAQQF Sbjct: 117 EMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQF 151 Score = 62.8 bits (151), Expect = 5e-08 Identities = 30/59 (50%), Positives = 39/59 (66%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508 +++VGNL + VD L LF G V VIYD+ TGRSRGFGFVT ++A+EV A + Sbjct: 205 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIE 263 >ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus] Length = 278 Score = 145 bits (367), Expect = 4e-33 Identities = 91/156 (58%), Positives = 101/156 (64%), Gaps = 4/156 (2%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQ----PFSSRFV 226 L LPSL KTL NP LF ++P SSS+ + P+S+S L PFSSRFV Sbjct: 8 LTLPSLTLKTLSSSNPK--FKLFSLNP-SSSIRLLSNPISISSFLLPSHRVSPPFSSRFV 64 Query: 227 ANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGN 406 NVA+SS++GQ DLKLFVGNLPF+VDSAQLAGLFESAG Sbjct: 65 RNVAVSSDYGQEEGTLEVDGDDSSYAP------DLKLFVGNLPFTVDSAQLAGLFESAGQ 118 Query: 407 VEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 VE VEVIYDK TGRSRGFGFVTMST EVEAAAQQF Sbjct: 119 VERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQF 154 Score = 58.9 bits (141), Expect = 7e-07 Identities = 28/59 (47%), Positives = 39/59 (66%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQ 508 ++ V NL + VD L LF GNV +V+YD+ +G+SRGFGFVT ++A+EV A Q Sbjct: 194 RVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQ 252 >ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Fragaria vesca subsp. vesca] Length = 277 Score = 139 bits (349), Expect = 5e-31 Identities = 89/152 (58%), Positives = 100/152 (65%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238 LVLPSL PKTL L +P KPTS+ S +S S KP+S+S S S FV +VA Sbjct: 8 LVLPSLTPKTLALYSP-KPTSVSLFSLSSFS---SLKPISISASFLSSGKASRSFVRHVA 63 Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418 +S +F Q DLKLFVGNLPF+VDSAQLA LFE AGNVEMV Sbjct: 64 VS-DFEQDEEVLSGDEAEPNFSP------DLKLFVGNLPFTVDSAQLAELFEGAGNVEMV 116 Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 EVIYDK TGRSRGFGFVTMS+AQEVEAAA+QF Sbjct: 117 EVIYDKTTGRSRGFGFVTMSSAQEVEAAARQF 148 Score = 60.1 bits (144), Expect = 3e-07 Identities = 28/67 (41%), Positives = 43/67 (64%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQ 511 +L+VGNL + VD+ L LF G V +V++D+ +GRSRGFGFVT +A+E+ +A + Sbjct: 193 RLYVGNLAWGVDNLALENLFNEQGKVLEAKVVFDRDSGRSRGFGFVTYGSAEEMNSAIES 252 Query: 512 FMAMTRG 532 + G Sbjct: 253 LDGVDLG 259 >ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] Length = 363 Score = 135 bits (339), Expect = 7e-30 Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%) Frame = +2 Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223 L + NPK+L LC ++P S+ + P SL+F H + S +L P + SRF Sbjct: 8 LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63 Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403 V NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAG Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123 Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Score = 63.5 bits (153), Expect = 3e-08 Identities = 30/57 (52%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 335 >ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] gi|186511018|ref|NP_850692.2| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa ribonucleoprotein, chloroplastic; AltName: Full=RNA-binding protein cp29; Flags: Precursor gi|6729497|emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana] gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160 [Arabidopsis thaliana] gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160 [Arabidopsis thaliana] gi|21593426|gb|AAM65393.1| RNA-binding protein cp29 protein [Arabidopsis thaliana] gi|332645568|gb|AEE79089.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] gi|332645569|gb|AEE79090.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] gi|332645570|gb|AEE79091.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana] Length = 342 Score = 135 bits (339), Expect = 7e-30 Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%) Frame = +2 Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223 L + NPK+L LC ++P S+ + P SL+F H + S +L P + SRF Sbjct: 8 LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63 Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403 V NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAG Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123 Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Score = 63.5 bits (153), Expect = 3e-08 Identities = 30/57 (52%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314 >dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana] Length = 334 Score = 135 bits (339), Expect = 7e-30 Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 7/157 (4%) Frame = +2 Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRF 223 L + NPK+L LC ++P S+ + P SL+F H + S +L P + SRF Sbjct: 8 LSAFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRF 63 Query: 224 VANVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAG 403 V NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAG Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123 Query: 404 NVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 NVEMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Score = 63.5 bits (153), Expect = 3e-08 Identities = 30/57 (52%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 306 >ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] Length = 289 Score = 134 bits (337), Expect = 1e-29 Identities = 85/152 (55%), Positives = 97/152 (63%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238 L L S NPK+L C ++P S+ + P S S ++ VS S + P +SRFV NVA Sbjct: 8 LALSSFNPKSLPFC-VSRPASVSLLPP-SLSFKLNSDSVSFSIAAKWNSP-ASRFVRNVA 64 Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418 I+SEF DLKLFVGNLPF+VDSAQLA LFESAGNVEMV Sbjct: 65 ITSEF----EVEEDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120 Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 EVIYDKVTGRSRGFGFVTMS+ EVEAAA QF Sbjct: 121 EVIYDKVTGRSRGFGFVTMSSVSEVEAAANQF 152 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/57 (49%), Positives = 39/57 (68%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT +++QEV+ A Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNA 261 >gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana] Length = 289 Score = 134 bits (337), Expect = 1e-29 Identities = 85/152 (55%), Positives = 98/152 (64%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238 L L S NPK+L ++P S+ +SP S S ++ VS S + P +SRFV NVA Sbjct: 8 LALSSFNPKSLPF-GVSRPASVSLLSP-SLSFKLNSDSVSFSIAAKWNSP-ASRFVRNVA 64 Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418 I+SEF DLKLFVGNLPF+VDSAQLA LFESAGNVEMV Sbjct: 65 ITSEF----EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120 Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 EVIYDK+TGRSRGFGFVTMS+ EVEAAAQQF Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/57 (49%), Positives = 38/57 (66%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT ++QEV+ A Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261 >dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana] Length = 326 Score = 134 bits (336), Expect = 2e-29 Identities = 85/155 (54%), Positives = 98/155 (63%), Gaps = 7/155 (4%) Frame = +2 Query: 71 SLNPKTLFLCNPNKPTSLFFVSPNSSSLTF-----HAKPVSLSHSLGQQQP--FSSRFVA 229 + NPK+L LC ++P S+ + P SL+F H + S +L P + SRFV Sbjct: 2 AFNPKSLPLC-VSRPASVSVLPP---SLSFKLHSDHLVSIFASSALKCSSPAEYPSRFVR 57 Query: 230 NVAISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNV 409 NVA+SS+F DLKLFVGNL F+VDSAQLA LFESAGNV Sbjct: 58 NVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNV 117 Query: 410 EMVEVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 EMVEVIYDKVTGRSRGFGFVTMSTA EVEAAAQQF Sbjct: 118 EMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 152 Score = 63.5 bits (153), Expect = 3e-08 Identities = 30/57 (52%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+S++QEV+ A Sbjct: 242 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 298 >ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Capsella rubella] gi|482560193|gb|EOA24384.1| hypothetical protein CARUB_v10017634mg [Capsella rubella] Length = 327 Score = 133 bits (334), Expect = 3e-29 Identities = 85/150 (56%), Positives = 96/150 (64%) Frame = +2 Query: 65 LPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVAIS 244 L + NPK+L L + ++P SL + P+ S VSL S + SSRFV NVA+S Sbjct: 8 LSAFNPKSLPL-SVSRPASLSVLPPSLSFKLHSDHLVSLFASSSLK--CSSRFVRNVAVS 64 Query: 245 SEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMVEV 424 S+F DLKLFVGNL F+VDSAQLA LFESAGNVEMVEV Sbjct: 65 SDFEVEEDDMFADGDDSAPVERTSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 124 Query: 425 IYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 IYDKVTGRSRGFGFVTMSTA EVEAAAQQF Sbjct: 125 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 154 Score = 62.8 bits (151), Expect = 5e-08 Identities = 29/57 (50%), Positives = 40/57 (70%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +L+VGNL + VD L +F G V VIYD+ +GRS+GFGFVT+S++QEV+ A Sbjct: 243 RLYVGNLSWGVDDMALENMFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 299 >ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis thaliana] gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags: Precursor gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana] gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana] gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana] gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana] gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana] gi|330254275|gb|AEC09369.1| chloroplast RNA binding protein [Arabidopsis thaliana] Length = 289 Score = 132 bits (333), Expect = 4e-29 Identities = 84/152 (55%), Positives = 97/152 (63%) Frame = +2 Query: 59 LVLPSLNPKTLFLCNPNKPTSLFFVSPNSSSLTFHAKPVSLSHSLGQQQPFSSRFVANVA 238 L L S NPK+L ++P S+ +SP S S ++ VS S + P +SRF NVA Sbjct: 8 LALSSFNPKSLPF-GVSRPASVSLLSP-SLSFKLNSDSVSFSIAAKWNSP-ASRFARNVA 64 Query: 239 ISSEFGQXXXXXXXXXXXXXXXXXXXXXXDLKLFVGNLPFSVDSAQLAGLFESAGNVEMV 418 I+SEF DLKLFVGNLPF+VDSAQLA LFESAGNVEMV Sbjct: 65 ITSEF----EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120 Query: 419 EVIYDKVTGRSRGFGFVTMSTAQEVEAAAQQF 514 EVIYDK+TGRSRGFGFVTMS+ EVEAAAQQF Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/57 (49%), Positives = 38/57 (66%) Frame = +2 Query: 332 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVEAA 502 +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT ++QEV+ A Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261