BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00008095
         (489 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFQ99052.1| RNA polymerase beta (chloroplast) [Sedum sarmento...   126   3e-27
ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subun...   119   4e-25
prf||1211235Q rpoC-like ORF 548                                       119   4e-25
ref|XP_004174097.1| PREDICTED: DNA-directed RNA polymerase subun...   117   1e-24
ref|XP_003605607.1| DNA-directed RNA polymerase subunit beta, pa...   112   2e-24
ref|XP_003606033.1| DNA-directed RNA polymerase [Medicago trunca...   112   2e-24
ref|XP_003600568.1| DNA-directed RNA polymerase beta' subunit [M...   112   2e-24
gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedice...   116   3e-24
ref|XP_004516189.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   110   6e-24
ref|YP_001294089.1| RNA polymerase beta [Chloranthus spicatus] g...   110   2e-22
ref|YP_008593102.1| DNA-directed RNA polymerase beta' subunit (c...   110   2e-22
ref|YP_008520130.1| DNA-directed RNA polymerase beta' subunit (c...   110   2e-22
ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (c...   110   2e-22
ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (c...   110   2e-22
ref|YP_008592748.1| DNA-directed RNA polymerase beta' subunit (c...   110   2e-22
ref|YP_008592630.1| RNA polymerase beta (chloroplast) [Berberis ...   110   2e-22
ref|YP_007317239.1| RNA polymerase beta' subunit (chloroplast) [...   110   2e-22
ref|XP_002886863.1| hypothetical protein ARALYDRAFT_893971 [Arab...   109   4e-22
ref|YP_008081256.1| RNA polymerase beta' subunit (chloroplast) [...   108   5e-22
ref|YP_007890364.1| RNA polymerase beta' subunit (chloroplast) [...   108   5e-22

>gb|AFQ99052.1| RNA polymerase beta (chloroplast) [Sedum sarmentosum]
          Length = 552

 Score =  126 bits (316), Expect = 3e-27
 Identities = 59/61 (96%), Positives = 59/61 (96%)
 Frame = +3

Query: 306 ILKGGDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE 485
           ILKGGDP GSYPNFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNRE
Sbjct: 2   ILKGGDPTGSYPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNRE 61

Query: 486 I 488
           I
Sbjct: 62  I 62


>ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subunit beta'-like [Solanum
           tuberosum]
          Length = 581

 Score =  119 bits (298), Expect = 4e-25
 Identities = 56/65 (86%), Positives = 58/65 (89%)
 Frame = +3

Query: 294 LSRPILKGGDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTF 473
           +S    +GGDPI SYPNFSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTF
Sbjct: 28  ISNSHAQGGDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTF 87

Query: 474 RNREI 488
           RNREI
Sbjct: 88  RNREI 92


>prf||1211235Q rpoC-like ORF 548
          Length = 548

 Score =  119 bits (298), Expect = 4e-25
 Identities = 55/59 (93%), Positives = 56/59 (94%)
 Frame = +3

Query: 312 KGGDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           +GGDPI SYPNFSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREI
Sbjct: 1   RGGDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREI 59


>ref|XP_004174097.1| PREDICTED: DNA-directed RNA polymerase subunit beta'-like, partial
           [Cucumis sativus]
          Length = 471

 Score =  117 bits (293), Expect = 1e-24
 Identities = 55/56 (98%), Positives = 55/56 (98%)
 Frame = +3

Query: 321 DPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           DPI SYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI
Sbjct: 3   DPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 58


>ref|XP_003605607.1| DNA-directed RNA polymerase subunit beta, partial [Medicago
           truncatula] gi|355506662|gb|AES87804.1| DNA-directed RNA
           polymerase subunit beta, partial [Medicago truncatula]
          Length = 2049

 Score =  112 bits (279), Expect(2) = 2e-24
 Identities = 51/54 (94%), Positives = 52/54 (96%)
 Frame = +3

Query: 327 IGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           IGSYPNFSFARP+ KKPTFLRLRGSFEYEIQSWKYSIPLFF TQGFDTFRNREI
Sbjct: 609 IGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFATQGFDTFRNREI 662



 Score = 25.8 bits (55), Expect(2) = 2e-24
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 280 RMRGNFHVRF*RGE 321
           RMRGN HVRF +GE
Sbjct: 592 RMRGNPHVRFSKGE 605


>ref|XP_003606033.1| DNA-directed RNA polymerase [Medicago truncatula]
            gi|355507088|gb|AES88230.1| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1748

 Score =  112 bits (279), Expect(2) = 2e-24
 Identities = 51/54 (94%), Positives = 52/54 (96%)
 Frame = +3

Query: 327  IGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
            IGSYPNFSFARP+ KKPTFLRLRGSFEYEIQSWKYSIPLFF TQGFDTFRNREI
Sbjct: 1215 IGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFATQGFDTFRNREI 1268



 Score = 25.8 bits (55), Expect(2) = 2e-24
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 280  RMRGNFHVRF*RGE 321
            RMRGN HVRF +GE
Sbjct: 1198 RMRGNPHVRFSKGE 1211


>ref|XP_003600568.1| DNA-directed RNA polymerase beta' subunit [Medicago truncatula]
           gi|357460575|ref|XP_003600569.1| DNA-directed RNA
           polymerase beta' subunit [Medicago truncatula]
           gi|355489616|gb|AES70819.1| DNA-directed RNA polymerase
           beta' subunit [Medicago truncatula]
           gi|355489617|gb|AES70820.1| DNA-directed RNA polymerase
           beta' subunit [Medicago truncatula]
          Length = 710

 Score =  112 bits (279), Expect(2) = 2e-24
 Identities = 51/54 (94%), Positives = 52/54 (96%)
 Frame = +3

Query: 327 IGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           IGSYPNFSFARP+ KKPTFLRLRGSFEYEIQSWKYSIPLFF TQGFDTFRNREI
Sbjct: 163 IGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFATQGFDTFRNREI 216



 Score = 25.8 bits (55), Expect(2) = 2e-24
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 280 RMRGNFHVRF*RGE 321
           RMRGN HVRF +GE
Sbjct: 146 RMRGNPHVRFSKGE 159


>gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedicellaris]
          Length = 718

 Score =  116 bits (290), Expect = 3e-24
 Identities = 54/59 (91%), Positives = 55/59 (93%)
 Frame = +3

Query: 312 KGGDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           +GG PI SYPNFSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREI
Sbjct: 172 RGGAPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREI 230


>ref|XP_004516189.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
            beta-like [Cicer arietinum]
          Length = 1747

 Score =  110 bits (275), Expect(2) = 6e-24
 Identities = 51/53 (96%), Positives = 51/53 (96%)
 Frame = +3

Query: 330  GSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
            GSYPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFF TQGFDTFRNREI
Sbjct: 1217 GSYPNFSFARPIIKKPTFLRLRGSFEYEIQSWKYSIPLFFATQGFDTFRNREI 1269



 Score = 25.8 bits (55), Expect(2) = 6e-24
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 280  RMRGNFHVRF*RGE 321
            RMRGN HVRF +GE
Sbjct: 1198 RMRGNPHVRFSKGE 1211


>ref|YP_001294089.1| RNA polymerase beta [Chloranthus spicatus]
           gi|212288280|sp|A6MMB3.1|RPOC1_CHLSC RecName:
           Full=DNA-directed RNA polymerase subunit beta'; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta'; Short=RNA polymerase subunit beta'
           gi|146744179|gb|ABQ43251.1| RNA polymerase beta
           [Chloranthus spicatus]
          Length = 688

 Score =  110 bits (275), Expect = 2e-22
 Identities = 51/51 (100%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 196


>ref|YP_008593102.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
           yunnanensis] gi|537362855|gb|AGU44658.1| DNA-directed
           RNA polymerase beta' subunit (chloroplast) [Camellia
           yunnanensis]
          Length = 686

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE+
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREV 196


>ref|YP_008520130.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
           taliensis] gi|537362675|gb|AGU44480.1| DNA-directed RNA
           polymerase beta' subunit (chloroplast) [Camellia
           taliensis] gi|537362945|gb|AGU44747.1| DNA-directed RNA
           polymerase beta' subunit (chloroplast) [Camellia
           taliensis]
          Length = 686

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE+
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREV 196


>ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
           impressinervis] gi|537362585|gb|AGU44391.1| DNA-directed
           RNA polymerase beta' subunit (chloroplast) [Camellia
           impressinervis]
          Length = 686

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE+
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREV 196


>ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
           danzaiensis] gi|552546184|ref|YP_008593013.1|
           DNA-directed RNA polymerase beta' subunit (chloroplast)
           [Camellia pitardii] gi|537362497|gb|AGU44304.1|
           DNA-directed RNA polymerase beta' subunit (chloroplast)
           [Camellia danzaiensis] gi|537362765|gb|AGU44569.1|
           DNA-directed RNA polymerase beta' subunit (chloroplast)
           [Camellia pitardii]
          Length = 686

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE+
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREV 196


>ref|YP_008592748.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
           cuspidata] gi|537362407|gb|AGU44215.1| DNA-directed RNA
           polymerase beta' subunit (chloroplast) [Camellia
           cuspidata]
          Length = 686

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE+
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREV 196


>ref|YP_008592630.1| RNA polymerase beta (chloroplast) [Berberis bealei]
           gi|536462671|gb|AGU37036.1| RNA polymerase beta
           (chloroplast) [Berberis bealei]
          Length = 684

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARP+AKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI
Sbjct: 146 YPNFSFARPVAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 196


>ref|YP_007317239.1| RNA polymerase beta' subunit (chloroplast) [Camellia sinensis]
           gi|430728263|gb|AGA55587.1| RNA polymerase beta' subunit
           (chloroplast) [Camellia sinensis]
          Length = 692

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE+
Sbjct: 152 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREV 202


>ref|XP_002886863.1| hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp.
            lyrata] gi|297332704|gb|EFH63122.1| hypothetical protein
            ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata]
          Length = 1763

 Score =  109 bits (272), Expect = 4e-22
 Identities = 52/61 (85%), Positives = 53/61 (86%)
 Frame = +3

Query: 306  ILKGGDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNRE 485
            I+ G    G YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFD FRNRE
Sbjct: 1215 IVGGRSYSGPYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDIFRNRE 1274

Query: 486  I 488
            I
Sbjct: 1275 I 1275


>ref|YP_008081256.1| RNA polymerase beta' subunit (chloroplast) [Catharanthus roseus]
           gi|474452067|gb|AGI51135.1| RNA polymerase beta' subunit
           (chloroplast) [Catharanthus roseus]
          Length = 684

 Score =  108 bits (271), Expect = 5e-22
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI
Sbjct: 146 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 196


>ref|YP_007890364.1| RNA polymerase beta' subunit (chloroplast) [Ardisia polysticta]
           gi|456367961|gb|AGG36875.1| RNA polymerase beta' subunit
           (chloroplast) [Ardisia polysticta]
          Length = 686

 Score =  108 bits (271), Expect = 5e-22
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +3

Query: 336 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 488
           YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI
Sbjct: 146 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREI 196