BLASTX nr result
ID: Jatropha_contig00006487
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00006487
(581 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 127 2e-27
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su... 125 1e-26
gb|ESQ55196.1| hypothetical protein EUTSA_v10024251mg [Eutrema s... 124 1e-26
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su... 124 1e-26
gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus pe... 124 1e-26
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus... 123 3e-26
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor... 123 4e-26
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca... 122 5e-26
gb|EEE85647.2| hypothetical protein POPTR_0004s04320g [Populus t... 122 6e-26
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su... 122 6e-26
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 122 6e-26
gb|ESR36834.1| hypothetical protein CICLE_v10027701mg [Citrus cl... 121 1e-25
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 121 1e-25
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 121 1e-25
dbj|BAD44440.1| DNA-directed RNA polymerase II second largest ch... 120 2e-25
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 120 2e-25
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps... 120 3e-25
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab... 120 3e-25
ref|XP_002305136.1| predicted protein [Populus trichocarpa] 120 3e-25
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 120 3e-25
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 127 bits (320), Expect = 2e-27
Identities = 65/88 (73%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXD-AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 366
M+D+ EYDQ LN + AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 365 VDESADIEIRPESQHNPGHQPDFAEVLW 282
VDESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIY 88
>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
arietinum]
Length = 1194
Score = 125 bits (313), Expect = 1e-26
Identities = 64/87 (73%), Positives = 69/87 (79%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
+D+E EYDQ + DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3 LDEEQEYDQQM-MDEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62 DESADIEIRPESQHNPGHQSDFAETIY 88
>gb|ESQ55196.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
Length = 1188
Score = 124 bits (312), Expect = 1e-26
Identities = 63/85 (74%), Positives = 67/85 (78%)
Frame = -1
Query: 536 DEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 357
D +EY+Q N DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 2 DYNEYEQEPNYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 61
Query: 356 SADIEIRPESQHNPGHQPDFAEVLW 282
SADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62 SADIEIRPESQHNPGHQSDFAETIY 86
>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Fragaria vesca subsp. vesca]
Length = 1191
Score = 124 bits (312), Expect = 1e-26
Identities = 62/87 (71%), Positives = 69/87 (79%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
M++E EY++ N AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MEEEPEYEEQYNDDDDEDEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DE+ADIEIRPESQHNPGHQPDFAE ++
Sbjct: 59 DEAADIEIRPESQHNPGHQPDFAETIY 85
>gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
Length = 1192
Score = 124 bits (312), Expect = 1e-26
Identities = 65/87 (74%), Positives = 67/87 (77%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
MD+E EYD DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MDEEPEYDD--QQYNDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQPDFAE +
Sbjct: 59 DESADIEIRPESQHNPGHQPDFAETTY 85
>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
Length = 1194
Score = 123 bits (309), Expect = 3e-26
Identities = 63/87 (72%), Positives = 69/87 (79%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
+++E EYDQ + DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3 LEEEQEYDQQM-MEEEDDEDDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62 DESADIEIRPESQHNPGHQSDFAETIY 88
>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao]
Length = 1189
Score = 123 bits (308), Expect = 4e-26
Identities = 64/87 (73%), Positives = 68/87 (78%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
M+D+ EYD L DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MEDDSEYDPQL--MDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 59 DESADIEIRPESQHNPGHQSDFAETIY 85
>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 1213
Score = 122 bits (307), Expect = 5e-26
Identities = 61/87 (70%), Positives = 69/87 (79%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
+++E+E+DQ + AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 5 LEEENEFDQQMEEEDDEEEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 62
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 63 DESADIEIRPESQHNPGHQSDFAETIY 89
>gb|EEE85647.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
Length = 1215
Score = 122 bits (306), Expect = 6e-26
Identities = 65/92 (70%), Positives = 69/92 (75%), Gaps = 5/92 (5%)
Frame = -1
Query: 542 MDDEHEYDQ-PLNXXXXXXXXXXXXXD----AWAVISAYFEEKGLVRQQLDSFDEFIQNT 378
M+D EYDQ P+N AWAVISAYFEEKGLVRQQLDSFDEFIQNT
Sbjct: 1 MEDLDEYDQQPMNEDMEPEEEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 60
Query: 377 MQEIVDESADIEIRPESQHNPGHQPDFAEVLW 282
MQEIVDESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 61 MQEIVDESADIEIRPESQHNPGHQSDFAETIY 92
>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1193
Score = 122 bits (306), Expect = 6e-26
Identities = 62/87 (71%), Positives = 69/87 (79%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
+++E EYD+ + DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3 LEEEQEYDEQM-MEEDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62 DESADIEIRPESQHNPGHQSDFAETIY 88
>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1192
Score = 122 bits (306), Expect = 6e-26
Identities = 62/87 (71%), Positives = 69/87 (79%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
+++E EYD+ + DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3 LEEEQEYDEQM-MEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62 DESADIEIRPESQHNPGHQSDFAETIY 88
>gb|ESR36834.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
Length = 1195
Score = 121 bits (304), Expect = 1e-25
Identities = 60/87 (68%), Positives = 68/87 (78%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
M+D+++Y++ DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 2 MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPG Q DFAE ++
Sbjct: 62 DESADIEIRPESQHNPGQQSDFAETIY 88
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 121 bits (304), Expect = 1e-25
Identities = 63/87 (72%), Positives = 66/87 (75%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
MD E EY+ N AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MDMEDEYEPQYNVDDDEEEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 59 DESADIEIRPESQHNPGHQSDFAETIY 85
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Solanum tuberosum]
Length = 1191
Score = 121 bits (303), Expect = 1e-25
Identities = 63/87 (72%), Positives = 66/87 (75%)
Frame = -1
Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
MD E EY+ N AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MDLEDEYEPQYNVDDDEEEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 59 DESADIEIRPESQHNPGHQSDFAETIY 85
>dbj|BAD44440.1| DNA-directed RNA polymerase II second largest chain [Arabidopsis
thaliana]
Length = 124
Score = 120 bits (302), Expect = 2e-25
Identities = 59/63 (93%), Positives = 60/63 (95%)
Frame = -1
Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAEV+
Sbjct: 26 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAEVV 85
Query: 284 WVF 276
F
Sbjct: 86 SSF 88
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1191
Score = 120 bits (302), Expect = 2e-25
Identities = 61/86 (70%), Positives = 66/86 (76%)
Frame = -1
Query: 539 DDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 360
++E EYD + AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
Sbjct: 4 EEEEEYDPTMEDEEEEITQED----AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 59
Query: 359 ESADIEIRPESQHNPGHQPDFAEVLW 282
ESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 60 ESADIEIRPESQHNPGHQSDFAETIY 85
>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
gi|482554282|gb|EOA18475.1| hypothetical protein
CARUB_v10007021mg [Capsella rubella]
Length = 1188
Score = 120 bits (300), Expect = 3e-25
Identities = 57/61 (93%), Positives = 59/61 (96%)
Frame = -1
Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAE +
Sbjct: 26 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85
Query: 284 W 282
+
Sbjct: 86 Y 86
>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
Length = 1188
Score = 120 bits (300), Expect = 3e-25
Identities = 57/61 (93%), Positives = 59/61 (96%)
Frame = -1
Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAE +
Sbjct: 26 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85
Query: 284 W 282
+
Sbjct: 86 Y 86
>ref|XP_002305136.1| predicted protein [Populus trichocarpa]
Length = 690
Score = 120 bits (300), Expect = 3e-25
Identities = 57/61 (93%), Positives = 59/61 (96%)
Frame = -1
Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAE +
Sbjct: 17 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 76
Query: 284 W 282
+
Sbjct: 77 Y 77
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 120 bits (300), Expect = 3e-25
Identities = 57/61 (93%), Positives = 59/61 (96%)
Frame = -1
Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QPDFAE +
Sbjct: 34 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFAETI 93
Query: 284 W 282
+
Sbjct: 94 Y 94