BLASTX nr result

ID: Jatropha_contig00006487 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00006487
         (581 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   127   2e-27
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su...   125   1e-26
gb|ESQ55196.1| hypothetical protein EUTSA_v10024251mg [Eutrema s...   124   1e-26
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su...   124   1e-26
gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus pe...   124   1e-26
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus...   123   3e-26
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor...   123   4e-26
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca...   122   5e-26
gb|EEE85647.2| hypothetical protein POPTR_0004s04320g [Populus t...   122   6e-26
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...   122   6e-26
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...   122   6e-26
gb|ESR36834.1| hypothetical protein CICLE_v10027701mg [Citrus cl...   121   1e-25
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...   121   1e-25
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...   121   1e-25
dbj|BAD44440.1| DNA-directed RNA polymerase II second largest ch...   120   2e-25
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   120   2e-25
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps...   120   3e-25
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab...   120   3e-25
ref|XP_002305136.1| predicted protein [Populus trichocarpa]           120   3e-25
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...   120   3e-25

>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  127 bits (320), Expect = 2e-27
 Identities = 65/88 (73%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXD-AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 366
           M+D+ EYDQ LN             + AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1   MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60

Query: 365 VDESADIEIRPESQHNPGHQPDFAEVLW 282
           VDESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 61  VDESADIEIRPESQHNPGHQSDFAETIY 88


>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
           arietinum]
          Length = 1194

 Score =  125 bits (313), Expect = 1e-26
 Identities = 64/87 (73%), Positives = 69/87 (79%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           +D+E EYDQ +              DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3   LDEEQEYDQQM-MDEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62  DESADIEIRPESQHNPGHQSDFAETIY 88


>gb|ESQ55196.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
          Length = 1188

 Score =  124 bits (312), Expect = 1e-26
 Identities = 63/85 (74%), Positives = 67/85 (78%)
 Frame = -1

Query: 536 DEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 357
           D +EY+Q  N             DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 2   DYNEYEQEPNYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 61

Query: 356 SADIEIRPESQHNPGHQPDFAEVLW 282
           SADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62  SADIEIRPESQHNPGHQSDFAETIY 86


>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Fragaria vesca subsp. vesca]
          Length = 1191

 Score =  124 bits (312), Expect = 1e-26
 Identities = 62/87 (71%), Positives = 69/87 (79%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           M++E EY++  N              AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1   MEEEPEYEEQYNDDDDEDEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DE+ADIEIRPESQHNPGHQPDFAE ++
Sbjct: 59  DEAADIEIRPESQHNPGHQPDFAETIY 85


>gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
          Length = 1192

 Score =  124 bits (312), Expect = 1e-26
 Identities = 65/87 (74%), Positives = 67/87 (77%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           MD+E EYD                 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1   MDEEPEYDD--QQYNDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQPDFAE  +
Sbjct: 59  DESADIEIRPESQHNPGHQPDFAETTY 85


>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score =  123 bits (309), Expect = 3e-26
 Identities = 63/87 (72%), Positives = 69/87 (79%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           +++E EYDQ +              DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3   LEEEQEYDQQM-MEEEDDEDDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62  DESADIEIRPESQHNPGHQSDFAETIY 88


>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
           cacao]
          Length = 1189

 Score =  123 bits (308), Expect = 4e-26
 Identities = 64/87 (73%), Positives = 68/87 (78%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           M+D+ EYD  L              DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1   MEDDSEYDPQL--MDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 59  DESADIEIRPESQHNPGHQSDFAETIY 85


>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 1213

 Score =  122 bits (307), Expect = 5e-26
 Identities = 61/87 (70%), Positives = 69/87 (79%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           +++E+E+DQ +               AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 5   LEEENEFDQQMEEEDDEEEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 62

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 63  DESADIEIRPESQHNPGHQSDFAETIY 89


>gb|EEE85647.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
          Length = 1215

 Score =  122 bits (306), Expect = 6e-26
 Identities = 65/92 (70%), Positives = 69/92 (75%), Gaps = 5/92 (5%)
 Frame = -1

Query: 542 MDDEHEYDQ-PLNXXXXXXXXXXXXXD----AWAVISAYFEEKGLVRQQLDSFDEFIQNT 378
           M+D  EYDQ P+N                  AWAVISAYFEEKGLVRQQLDSFDEFIQNT
Sbjct: 1   MEDLDEYDQQPMNEDMEPEEEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 60

Query: 377 MQEIVDESADIEIRPESQHNPGHQPDFAEVLW 282
           MQEIVDESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 61  MQEIVDESADIEIRPESQHNPGHQSDFAETIY 92


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Glycine max]
          Length = 1193

 Score =  122 bits (306), Expect = 6e-26
 Identities = 62/87 (71%), Positives = 69/87 (79%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           +++E EYD+ +              DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3   LEEEQEYDEQM-MEEDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62  DESADIEIRPESQHNPGHQSDFAETIY 88


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Glycine max]
          Length = 1192

 Score =  122 bits (306), Expect = 6e-26
 Identities = 62/87 (71%), Positives = 69/87 (79%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           +++E EYD+ +              DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3   LEEEQEYDEQM-MEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 62  DESADIEIRPESQHNPGHQSDFAETIY 88


>gb|ESR36834.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
          Length = 1195

 Score =  121 bits (304), Expect = 1e-25
 Identities = 60/87 (68%), Positives = 68/87 (78%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           M+D+++Y++                DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 2   MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPG Q DFAE ++
Sbjct: 62  DESADIEIRPESQHNPGQQSDFAETIY 88


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
           gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
           Full=DNA-directed RNA polymerase II subunit RPB2;
           Short=RNA polymerase II subunit 2; Short=RNA polymerase
           II subunit B2; AltName: Full=DNA-directed RNA polymerase
           II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
           polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  121 bits (304), Expect = 1e-25
 Identities = 63/87 (72%), Positives = 66/87 (75%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           MD E EY+   N              AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1   MDMEDEYEPQYNVDDDEEEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 59  DESADIEIRPESQHNPGHQSDFAETIY 85


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Solanum tuberosum]
          Length = 1191

 Score =  121 bits (303), Expect = 1e-25
 Identities = 63/87 (72%), Positives = 66/87 (75%)
 Frame = -1

Query: 542 MDDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 363
           MD E EY+   N              AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1   MDLEDEYEPQYNVDDDEEEITQED--AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58

Query: 362 DESADIEIRPESQHNPGHQPDFAEVLW 282
           DESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 59  DESADIEIRPESQHNPGHQSDFAETIY 85


>dbj|BAD44440.1| DNA-directed RNA polymerase II second largest chain [Arabidopsis
           thaliana]
          Length = 124

 Score =  120 bits (302), Expect = 2e-25
 Identities = 59/63 (93%), Positives = 60/63 (95%)
 Frame = -1

Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAEV+
Sbjct: 26  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAEVV 85

Query: 284 WVF 276
             F
Sbjct: 86  SSF 88


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron
           macrophyllum]
          Length = 1191

 Score =  120 bits (302), Expect = 2e-25
 Identities = 61/86 (70%), Positives = 66/86 (76%)
 Frame = -1

Query: 539 DDEHEYDQPLNXXXXXXXXXXXXXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 360
           ++E EYD  +               AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
Sbjct: 4   EEEEEYDPTMEDEEEEITQED----AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 59

Query: 359 ESADIEIRPESQHNPGHQPDFAEVLW 282
           ESADIEIRPESQHNPGHQ DFAE ++
Sbjct: 60  ESADIEIRPESQHNPGHQSDFAETIY 85


>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
           gi|482554282|gb|EOA18475.1| hypothetical protein
           CARUB_v10007021mg [Capsella rubella]
          Length = 1188

 Score =  120 bits (300), Expect = 3e-25
 Identities = 57/61 (93%), Positives = 59/61 (96%)
 Frame = -1

Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAE +
Sbjct: 26  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85

Query: 284 W 282
           +
Sbjct: 86  Y 86


>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
           lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
           ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
          Length = 1188

 Score =  120 bits (300), Expect = 3e-25
 Identities = 57/61 (93%), Positives = 59/61 (96%)
 Frame = -1

Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAE +
Sbjct: 26  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85

Query: 284 W 282
           +
Sbjct: 86  Y 86


>ref|XP_002305136.1| predicted protein [Populus trichocarpa]
          Length = 690

 Score =  120 bits (300), Expect = 3e-25
 Identities = 57/61 (93%), Positives = 59/61 (96%)
 Frame = -1

Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAE +
Sbjct: 17  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 76

Query: 284 W 282
           +
Sbjct: 77  Y 77


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  120 bits (300), Expect = 3e-25
 Identities = 57/61 (93%), Positives = 59/61 (96%)
 Frame = -1

Query: 464 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAEVL 285
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QPDFAE +
Sbjct: 34  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFAETI 93

Query: 284 W 282
           +
Sbjct: 94  Y 94


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