BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00003233
         (320 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RP...   134   2e-29
gb|AAK55847.1|AF266463_1 RNA polymerase subunit [Manihot esculenta]   134   2e-29
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ...   127   1e-27
gb|ESR56121.1| hypothetical protein CICLE_v10022723mg [Citrus cl...   126   3e-27
gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]        117   1e-24
gb|ERP54174.1| hypothetical protein POPTR_0013s12480g [Populus t...   115   4e-24
ref|XP_002327199.1| predicted protein [Populus trichocarpa]           115   4e-24
ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Caps...   113   3e-23
ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|7...   113   3e-23
ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrat...   113   3e-23
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2...   111   8e-23
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   111   1e-22
gb|EOY04748.1| RNA polymerase Rpb8, putative isoform 1 [Theobrom...   111   1e-22
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   111   1e-22
gb|ABK26380.1| unknown [Picea sitchensis]                             110   1e-22
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   110   1e-22
gb|ESQ38556.1| hypothetical protein EUTSA_v10029046mg [Eutrema s...   110   2e-22
gb|ESQ44127.1| hypothetical protein EUTSA_v10006298mg [Eutrema s...   110   2e-22
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S...   108   5e-22
gb|EOY04749.1| RNA polymerase Rpb8, putative isoform 2 [Theobrom...   107   2e-21

>gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RPB8, partial [Manihot
           esculenta]
          Length = 110

 Score =  134 bits (336), Expect = 2e-29
 Identities = 65/72 (90%), Positives = 68/72 (94%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YY QGARKTL DKYEYIMHGKLYKISEEGSG+ VKAEI+VSYGGLLMMLKGDPSHV+ FE
Sbjct: 39  YYIQGARKTLADKYEYIMHGKLYKISEEGSGKAVKAEIYVSYGGLLMMLKGDPSHVSHFE 98

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLLIRKL
Sbjct: 99  LDQRLFLLIRKL 110


>gb|AAK55847.1|AF266463_1 RNA polymerase subunit [Manihot esculenta]
          Length = 96

 Score =  134 bits (336), Expect = 2e-29
 Identities = 65/72 (90%), Positives = 68/72 (94%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YY QGARKTL DKYEYIMHGKLYKISEEGSG+ VKAEI+VSYGGLLMMLKGDPSHV+ FE
Sbjct: 25  YYIQGARKTLADKYEYIMHGKLYKISEEGSGKAVKAEIYVSYGGLLMMLKGDPSHVSHFE 84

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLLIRKL
Sbjct: 85  LDQRLFLLIRKL 96


>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
           putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
           DNA-directed RNA polymerases I, II, and III 17.1 kDa
           polypeptide, putative [Ricinus communis]
          Length = 146

 Score =  127 bits (320), Expect = 1e-27
 Identities = 61/72 (84%), Positives = 68/72 (94%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YYTQGARKTL DKYEYIM+GKLYKISEEGSG+ VKAE+ VSYGGLLM+L+GDPSHV+ FE
Sbjct: 75  YYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLLMLLRGDPSHVSHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>gb|ESR56121.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
          Length = 146

 Score =  126 bits (316), Expect = 3e-27
 Identities = 59/72 (81%), Positives = 68/72 (94%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YYT GARKTL DKYEYIMHGKL+KI +EGSG+++KAEI+VSYGGLLMMLKGDPS+V+ FE
Sbjct: 75  YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
          Length = 145

 Score =  117 bits (294), Expect = 1e-24
 Identities = 55/72 (76%), Positives = 67/72 (93%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YYT G RK+L DKYEY+MHGKLYK+S++GSG+ +KAEI+VSYGGLLMML+G+ SHV+QFE
Sbjct: 75  YYTPG-RKSLADKYEYVMHGKLYKVSDDGSGKGLKAEIYVSYGGLLMMLRGEASHVSQFE 133

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 134 LDQRLFLLMRKL 145


>gb|ERP54174.1| hypothetical protein POPTR_0013s12480g [Populus trichocarpa]
           gi|550325654|gb|ERP54175.1| RNA polymerase subunit
           family protein [Populus trichocarpa]
          Length = 148

 Score =  115 bits (289), Expect = 4e-24
 Identities = 53/72 (73%), Positives = 63/72 (87%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YYTQG RKTL DKYEY+MHGKLY+I EEGS R  + E+ +++GGLLM+LKGDPS+V+QFE
Sbjct: 77  YYTQGGRKTLADKYEYVMHGKLYQIQEEGSRRATRTEMVITFGGLLMLLKGDPSYVSQFE 136

Query: 193 LDQRLFLLIRKL 228
           LDQRLF LIRKL
Sbjct: 137 LDQRLFCLIRKL 148


>ref|XP_002327199.1| predicted protein [Populus trichocarpa]
          Length = 148

 Score =  115 bits (289), Expect = 4e-24
 Identities = 53/72 (73%), Positives = 63/72 (87%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YYTQG RKTL DKYEY+MHGKLY+I EEGS R  + E+ +++GGLLM+LKGDPS+V+QFE
Sbjct: 77  YYTQGGRKTLADKYEYVMHGKLYQIQEEGSRRATRTEMVITFGGLLMLLKGDPSYVSQFE 136

Query: 193 LDQRLFLLIRKL 228
           LDQRLF LIRKL
Sbjct: 137 LDQRLFCLIRKL 148


>ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Capsella rubella]
           gi|482574468|gb|EOA38655.1| hypothetical protein
           CARUB_v10010575mg [Capsella rubella]
          Length = 146

 Score =  113 bits (282), Expect = 3e-23
 Identities = 53/72 (73%), Positives = 64/72 (88%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+T GA+KTL DKYEYIMHGKLYKISE   G+  KAE++VS+GGLLM+LKGDP+H++ FE
Sbjct: 76  YFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLKGDPAHISHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|75100070|sp|O81097.1|RPB8A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and V subunit 8A;
           AltName: Full=RNA polymerase I, II and III 16.5 kDa
           subunit; Short=AtRPABC16.5
           gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II
           and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III
           16.5 kDa subunit [Arabidopsis thaliana]
           gi|21555812|gb|AAM63939.1| RNA polymerase II subunit,
           putative [Arabidopsis thaliana]
           gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis
           thaliana] gi|110735704|dbj|BAE99832.1| RNA polymerase I,
           II and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8
           [Arabidopsis thaliana]
          Length = 146

 Score =  113 bits (282), Expect = 3e-23
 Identities = 53/72 (73%), Positives = 64/72 (88%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+T GA+KTL DKYEYIMHGKLYKISE   G+  KAE++VS+GGLLM+LKGDP+H++ FE
Sbjct: 76  YFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLKGDPAHISHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
           gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 146

 Score =  113 bits (282), Expect = 3e-23
 Identities = 53/72 (73%), Positives = 64/72 (88%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+T GA+KTL DKYEYIMHGKLYKISE   G+  KAE++VS+GGLLM+LKGDP+H++ FE
Sbjct: 76  YFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLKGDPAHISHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|297817262|ref|XP_002876514.1| hypothetical protein
           ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
           gi|565468254|ref|XP_006292007.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
           gi|75335784|sp|Q9M1A8.1|RPB8B_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           8B; AltName: Full=RNA polymerase Rpb8
           gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
           thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
           subunit, putative [Arabidopsis thaliana]
           gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
           thaliana] gi|30793811|gb|AAP40358.1| unknown protein
           [Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
           hypothetical protein ARALYDRAFT_907465 [Arabidopsis
           lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
           polymerase Rpb8 [Arabidopsis thaliana]
           gi|482560714|gb|EOA24905.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
          Length = 146

 Score =  111 bits (278), Expect = 8e-23
 Identities = 52/72 (72%), Positives = 64/72 (88%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+T GA+KTL DKYEYIMHGKLYKISE   G+  KAE++VS+GGLLM+L+GDP+H++ FE
Sbjct: 76  YFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLQGDPAHISHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  111 bits (277), Expect = 1e-22
 Identities = 50/72 (69%), Positives = 65/72 (90%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+ QG +K+L DK+EY+MHGKLY+ISEEGSG++VKA+IFVS+GGLLM L+GDPS   +FE
Sbjct: 74  YFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDPSIAAKFE 133

Query: 193 LDQRLFLLIRKL 228
           LDQ++FLLIRK+
Sbjct: 134 LDQKIFLLIRKV 145


>gb|EOY04748.1| RNA polymerase Rpb8, putative isoform 1 [Theobroma cacao]
          Length = 188

 Score =  111 bits (277), Expect = 1e-22
 Identities = 53/72 (73%), Positives = 63/72 (87%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YY  G RK+L DKYEYIM GKLYKIS +GSG+++KAE+ VS GGLLMML+G+ SHV+QFE
Sbjct: 117 YYALGGRKSLADKYEYIMRGKLYKISADGSGKSLKAEMIVSSGGLLMMLRGEASHVSQFE 176

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 177 LDQRLFLLMRKL 188


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  111 bits (277), Expect = 1e-22
 Identities = 50/72 (69%), Positives = 65/72 (90%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+ QG +K+L DK+EY+MHGKLY+ISEEGSG++VKA+IFVS+GGLLM L+GDPS   +FE
Sbjct: 74  YFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDPSIAAKFE 133

Query: 193 LDQRLFLLIRKL 228
           LDQ++FLLIRK+
Sbjct: 134 LDQKIFLLIRKV 145


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  110 bits (276), Expect = 1e-22
 Identities = 51/72 (70%), Positives = 61/72 (84%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+ QG RK+L DKYEY+M+GKLY +SEEGSG NVK EI  S+GGLLM+LKGDPS+   FE
Sbjct: 74  YFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLMLLKGDPSNAGNFE 133

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RK+
Sbjct: 134 LDQRLFLLMRKV 145


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  110 bits (276), Expect = 1e-22
 Identities = 51/72 (70%), Positives = 62/72 (86%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YYTQ  RK+L DK+EY+MHGKLYKISEEGSG NVK  I+VS+GGLLMML GDP++  + +
Sbjct: 74  YYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLSGDPANTAKLD 133

Query: 193 LDQRLFLLIRKL 228
           LDQR+FLLIRK+
Sbjct: 134 LDQRVFLLIRKV 145


>gb|ESQ38556.1| hypothetical protein EUTSA_v10029046mg [Eutrema salsugineum]
          Length = 146

 Score =  110 bits (275), Expect = 2e-22
 Identities = 51/72 (70%), Positives = 64/72 (88%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+T GA+KTL DKYEYIMHGKLYKI+E   G+  KAE++VS+GGLLM+L+GDP+H++ FE
Sbjct: 76  YFTPGAKKTLADKYEYIMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQGDPAHISHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>gb|ESQ44127.1| hypothetical protein EUTSA_v10006298mg [Eutrema salsugineum]
           gi|557103774|gb|ESQ44128.1| hypothetical protein
           EUTSA_v10006298mg [Eutrema salsugineum]
          Length = 146

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/72 (69%), Positives = 64/72 (88%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           Y+T GA+KTL DKYEY+MHGKLYKI+E   G+  KAE++VS+GGLLM+L+GDP+H++ FE
Sbjct: 76  YFTPGAKKTLADKYEYVMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQGDPAHISHFE 134

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RKL
Sbjct: 135 LDQRLFLLMRKL 146


>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
           gi|241917379|gb|EER90523.1| hypothetical protein
           SORBIDRAFT_01g001420 [Sorghum bicolor]
          Length = 145

 Score =  108 bits (271), Expect = 5e-22
 Identities = 50/72 (69%), Positives = 59/72 (81%)
 Frame = +1

Query: 13  YYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHVNQFE 192
           YYTQ  RKTL D YEY+MHGKLYKISE+ S +N K EI+ S+GGLLM+L+GDPS    FE
Sbjct: 74  YYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLMLLRGDPSTAASFE 133

Query: 193 LDQRLFLLIRKL 228
           LDQRLFLL+RK+
Sbjct: 134 LDQRLFLLMRKV 145


>gb|EOY04749.1| RNA polymerase Rpb8, putative isoform 2 [Theobroma cacao]
          Length = 141

 Score =  107 bits (267), Expect = 2e-21
 Identities = 55/76 (72%), Positives = 65/76 (85%)
 Frame = +1

Query: 1   LTLVYYTQGARKTLXDKYEYIMHGKLYKISEEGSGRNVKAEIFVSYGGLLMMLKGDPSHV 180
           LTLV    G RK+L DKYEYIM GKLYKIS +GSG+++KAE+ VS GGLLMML+G+ SHV
Sbjct: 69  LTLVV---GGRKSLADKYEYIMRGKLYKISADGSGKSLKAEMIVSSGGLLMMLRGEASHV 125

Query: 181 NQFELDQRLFLLIRKL 228
           +QFELDQRLFLL+RKL
Sbjct: 126 SQFELDQRLFLLMRKL 141