BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00003156
         (469 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002720113.1| ycf3 [Jatropha curcas] gi|224979566|gb|ACN72...    64   1e-11
ref|YP_005090179.1| ycf3 gene product (chloroplast) [Ricinus com...    62   6e-11
gb|AEZ48760.1| photosystem I assembly protein Ycf3, partial [Cen...    63   8e-11
ref|YP_538849.1| photosystem I assembly protein Ycf3 [Solanum bu...    62   2e-10
gb|AFB70727.1| photosystem I assembly protein Ycf3, partial (chl...    60   2e-10
ref|YP_008592640.1| photosystem I assembly protein ycf3 (chlorop...    60   2e-10
ref|YP_004327663.1| photosystem I assembly protein ycf3 [Hevea b...    62   2e-10
ref|YP_005089148.1| ycf3 gene product [Rhynchoryza subulata] gi|...    62   3e-10
ref|YP_005088011.1| ycf3 gene product [Leersia tisserantii] gi|3...    62   3e-10
ref|YP_004940511.1| ycf3 gene product (chloroplast) [Boea hygrom...    59   3e-10
gb|AAZ03964.1| Ycf3 [Ranunculus macranthus]                            60   3e-10
gb|AEY84145.1| hypothetical chloroplast RF34 (chloroplast) [Vacc...    59   3e-10
gb|AGQ50350.1| hypothetical chloroplast RF34 (chloroplast) [Rume...    60   3e-10
sp|Q5IBL2.1|YCF3_PLALA RecName: Full=Photosystem I assembly prot...    61   3e-10
gb|AAW33070.1| photosystem I assembly protein ycf3 [Plantago rig...    61   3e-10
gb|AAW33062.1| photosystem I assembly protein ycf3 [Plantago aus...    61   3e-10
ref|YP_052750.1| photosystem I assembly protein Ycf3 [Oryza niva...    62   4e-10
prf||1603356AC intron-containing ORF 170                               62   4e-10
sp|P0C517.1|YCF3_ORYSI RecName: Full=Photosystem I assembly prot...    62   4e-10
ref|NP_039384.1| photosystem I assembly protein Ycf3 [Oryza sati...    62   4e-10

>ref|YP_002720113.1| ycf3 [Jatropha curcas] gi|224979566|gb|ACN72693.1| ycf3 [Jatropha
           curcas]
          Length = 168

 Score = 64.3 bits (155), Expect(2) = 1e-11
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSRTTGNFIDKTFSIVANILLRIIPTTSGEK
Sbjct: 1   MPRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 33



 Score = 30.4 bits (67), Expect(2) = 1e-11
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDGV+
Sbjct: 31  GEKEAFTYYRDGVM 44


>ref|YP_005090179.1| ycf3 gene product (chloroplast) [Ricinus communis]
           gi|339516166|gb|AEJ82556.1| photosystem I assembly
           protein Ycf3 [Ricinus communis]
          Length = 169

 Score = 62.0 bits (149), Expect(2) = 6e-11
 Identities = 31/33 (93%), Positives = 31/33 (93%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR TGNFIDKTFSIVANILLRIIPTTSGEK
Sbjct: 1   MPRSRITGNFIDKTFSIVANILLRIIPTTSGEK 33



 Score = 30.4 bits (67), Expect(2) = 6e-11
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDGV+
Sbjct: 31  GEKEAFTYYRDGVM 44


>gb|AEZ48760.1| photosystem I assembly protein Ycf3, partial [Centrolepis monogyna]
          Length = 169

 Score = 63.2 bits (152), Expect(2) = 8e-11
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEKR 92
           M RSRT GNFIDKTFSIVANILLRIIPTTSGEK+
Sbjct: 1   MPRSRTNGNFIDKTFSIVANILLRIIPTTSGEKK 34



 Score = 28.9 bits (63), Expect(2) = 8e-11
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G K+AFTYYRDGV+
Sbjct: 31  GEKKAFTYYRDGVM 44


>ref|YP_538849.1| photosystem I assembly protein Ycf3 [Solanum bulbocastanum]
           gi|122232537|sp|Q2MII6.1|YCF3_SOLBU RecName:
           Full=Photosystem I assembly protein ycf3
           gi|84371896|gb|ABC56214.1| photosystem I assembly
           protein ycf3 [Solanum bulbocastanum]
          Length = 168

 Score = 62.0 bits (149), Expect(2) = 2e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSRT GNFIDKTFSIVANILLR+IPTTSGEK
Sbjct: 1   MPRSRTNGNFIDKTFSIVANILLRVIPTTSGEK 33



 Score = 28.9 bits (63), Expect(2) = 2e-10
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGV 66
           G KEAFTYYRDG+
Sbjct: 31  GEKEAFTYYRDGM 43


>gb|AFB70727.1| photosystem I assembly protein Ycf3, partial (chloroplast) [Mollugo
           verticillata]
          Length = 217

 Score = 60.1 bits (144), Expect(2) = 2e-10
 Identities = 30/33 (90%), Positives = 30/33 (90%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEK
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEK 33



 Score = 30.4 bits (67), Expect(2) = 2e-10
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDGV+
Sbjct: 31  GEKEAFTYYRDGVM 44


>ref|YP_008592640.1| photosystem I assembly protein ycf3 (chloroplast) [Berberis bealei]
           gi|536462681|gb|AGU37046.1| photosystem I assembly
           protein ycf3 (chloroplast) [Berberis bealei]
          Length = 169

 Score = 60.1 bits (144), Expect(2) = 2e-10
 Identities = 30/33 (90%), Positives = 30/33 (90%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEK
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEK 33



 Score = 30.4 bits (67), Expect(2) = 2e-10
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDGV+
Sbjct: 31  GEKEAFTYYRDGVM 44


>ref|YP_004327663.1| photosystem I assembly protein ycf3 [Hevea brasiliensis]
           gi|308523508|gb|ADO33558.1| photosystem I assembly
           protein ycf3 [Hevea brasiliensis]
          Length = 168

 Score = 61.6 bits (148), Expect(2) = 2e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR TGNFIDKTFS+VANILLRIIPTTSGEK
Sbjct: 1   MPRSRITGNFIDKTFSVVANILLRIIPTTSGEK 33



 Score = 28.9 bits (63), Expect(2) = 2e-10
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGV 66
           G KEAFTYYRDG+
Sbjct: 31  GEKEAFTYYRDGM 43


>ref|YP_005089148.1| ycf3 gene product [Rhynchoryza subulata]
           gi|346228473|gb|AEO21345.1| hypothetical chloroplast
           RF34 [Rhynchoryza subulata] gi|353685054|gb|AER12819.1|
           hypothetical chloroplast RF34 (chloroplast) [Oryza
           sativa Indica Group] gi|353685142|gb|AER12906.1|
           hypothetical chloroplast RF34 (chloroplast) [Oryza
           sativa Indica Group] gi|555945989|gb|AGZ19215.1|
           hypothetical chloroplast RF34 (chloroplast) [Oryza
           rufipogon]
          Length = 172

 Score = 62.0 bits (149), Expect(2) = 3e-10
 Identities = 31/34 (91%), Positives = 31/34 (91%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEKR 92
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEKR
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKR 34



 Score = 28.1 bits (61), Expect(2) = 3e-10
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G K AFTYYRDG I
Sbjct: 31  GEKRAFTYYRDGAI 44


>ref|YP_005088011.1| ycf3 gene product [Leersia tisserantii] gi|346228305|gb|AEO21179.1|
           hypothetical chloroplast RF34 [Leersia tisserantii]
          Length = 172

 Score = 62.0 bits (149), Expect(2) = 3e-10
 Identities = 31/34 (91%), Positives = 31/34 (91%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEKR 92
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEKR
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKR 34



 Score = 28.1 bits (61), Expect(2) = 3e-10
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G K AFTYYRDG I
Sbjct: 31  GEKRAFTYYRDGAI 44


>ref|YP_004940511.1| ycf3 gene product (chloroplast) [Boea hygrometrica]
           gi|340549408|gb|AEK53230.1| hypothetical chloroplast
           RF34 (chloroplast) [Boea hygrometrica]
          Length = 171

 Score = 58.5 bits (140), Expect(2) = 3e-10
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR  GNFIDKTFSIVANILL+IIPTTSGEK
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLQIIPTTSGEK 33



 Score = 31.6 bits (70), Expect(2) = 3e-10
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDGVI
Sbjct: 31  GEKEAFTYYRDGVI 44


>gb|AAZ03964.1| Ycf3 [Ranunculus macranthus]
          Length = 170

 Score = 60.1 bits (144), Expect(2) = 3e-10
 Identities = 30/33 (90%), Positives = 30/33 (90%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEK
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEK 33



 Score = 30.0 bits (66), Expect(2) = 3e-10
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDG I
Sbjct: 31  GEKEAFTYYRDGAI 44


>gb|AEY84145.1| hypothetical chloroplast RF34 (chloroplast) [Vaccinium macrocarpon]
          Length = 170

 Score = 58.5 bits (140), Expect(2) = 3e-10
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR  GNFID+TFSI+ANILLRIIPTTSGEK
Sbjct: 1   MPRSRMNGNFIDRTFSIIANILLRIIPTTSGEK 33



 Score = 31.6 bits (70), Expect(2) = 3e-10
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDGVI
Sbjct: 31  GEKEAFTYYRDGVI 44


>gb|AGQ50350.1| hypothetical chloroplast RF34 (chloroplast) [Rumex acetosa]
          Length = 169

 Score = 59.7 bits (143), Expect(2) = 3e-10
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSR  GNFIDKTFS+VANILLRIIPTTSGEK
Sbjct: 1   MPRSRINGNFIDKTFSVVANILLRIIPTTSGEK 33



 Score = 30.4 bits (67), Expect(2) = 3e-10
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G KEAFTYYRDGV+
Sbjct: 31  GEKEAFTYYRDGVM 44


>sp|Q5IBL2.1|YCF3_PLALA RecName: Full=Photosystem I assembly protein ycf3
           gi|57115528|gb|AAW33066.1| photosystem I assembly
           protein ycf3 [Plantago lanceolata]
          Length = 168

 Score = 61.2 bits (147), Expect(2) = 3e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSRT GNFIDKTFSIVANILL+IIPTTSGEK
Sbjct: 1   MSRSRTNGNFIDKTFSIVANILLQIIPTTSGEK 33



 Score = 28.9 bits (63), Expect(2) = 3e-10
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGV 66
           G KEAFTYYRDG+
Sbjct: 31  GEKEAFTYYRDGM 43


>gb|AAW33070.1| photosystem I assembly protein ycf3 [Plantago rigida]
          Length = 168

 Score = 61.2 bits (147), Expect(2) = 3e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSRT GNFIDKTFSIVANILL+IIPTTSGEK
Sbjct: 1   MSRSRTNGNFIDKTFSIVANILLQIIPTTSGEK 33



 Score = 28.9 bits (63), Expect(2) = 3e-10
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGV 66
           G KEAFTYYRDG+
Sbjct: 31  GEKEAFTYYRDGM 43


>gb|AAW33062.1| photosystem I assembly protein ycf3 [Plantago australis]
           gi|57115525|gb|AAW33064.1| photosystem I assembly
           protein ycf3 [Plantago coronopus]
           gi|57115531|gb|AAW33068.1| photosystem I assembly
           protein ycf3 [Plantago media] gi|57115537|gb|AAW33072.1|
           photosystem I assembly protein ycf3 [Plantago rugelii]
          Length = 168

 Score = 61.2 bits (147), Expect(2) = 3e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEK 95
           M RSRT GNFIDKTFSIVANILL+IIPTTSGEK
Sbjct: 1   MSRSRTNGNFIDKTFSIVANILLQIIPTTSGEK 33



 Score = 28.9 bits (63), Expect(2) = 3e-10
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 104 GRKEAFTYYRDGV 66
           G KEAFTYYRDG+
Sbjct: 31  GEKEAFTYYRDGM 43


>ref|YP_052750.1| photosystem I assembly protein Ycf3 [Oryza nivara]
           gi|68053141|sp|Q6ENH3.1|YCF3_ORYNI RecName:
           Full=Photosystem I assembly protein ycf3
           gi|49614996|dbj|BAD26779.1| photosystem I assembly
           protein Ycf3 [Oryza nivara]
          Length = 170

 Score = 62.0 bits (149), Expect(2) = 4e-10
 Identities = 31/34 (91%), Positives = 31/34 (91%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEKR 92
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEKR
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKR 34



 Score = 27.7 bits (60), Expect(2) = 4e-10
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G K AFTYYRDG++
Sbjct: 31  GEKRAFTYYRDGML 44


>prf||1603356AC intron-containing ORF 170
          Length = 170

 Score = 62.0 bits (149), Expect(2) = 4e-10
 Identities = 31/34 (91%), Positives = 31/34 (91%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEKR 92
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEKR
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKR 34



 Score = 27.7 bits (60), Expect(2) = 4e-10
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G K AFTYYRDG++
Sbjct: 31  GEKRAFTYYRDGML 44


>sp|P0C517.1|YCF3_ORYSI RecName: Full=Photosystem I assembly protein ycf3
           gi|148887458|sp|P12203.3|YCF3_ORYSJ RecName:
           Full=Photosystem I assembly protein ycf3
           gi|148897905|sp|P0C516.1|YCF3_ORYSA RecName:
           Full=Photosystem I assembly protein ycf3
          Length = 170

 Score = 62.0 bits (149), Expect(2) = 4e-10
 Identities = 31/34 (91%), Positives = 31/34 (91%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEKR 92
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEKR
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKR 34



 Score = 27.7 bits (60), Expect(2) = 4e-10
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G K AFTYYRDG++
Sbjct: 31  GEKRAFTYYRDGML 44


>ref|NP_039384.1| photosystem I assembly protein Ycf3 [Oryza sativa Japonica Group]
           gi|669081|emb|CAA33997.1| unnamed protein product [Oryza
           sativa Japonica Group]
          Length = 169

 Score = 62.0 bits (149), Expect(2) = 4e-10
 Identities = 31/34 (91%), Positives = 31/34 (91%)
 Frame = -1

Query: 193 MHRSRTTGNFIDKTFSIVANILLRIIPTTSGEKR 92
           M RSR  GNFIDKTFSIVANILLRIIPTTSGEKR
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKR 34



 Score = 27.7 bits (60), Expect(2) = 4e-10
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 104 GRKEAFTYYRDGVI 63
           G K AFTYYRDG++
Sbjct: 31  GEKRAFTYYRDGML 44