BLASTX nr result
ID: Jatropha_contig00003148
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00003148
(229 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003599571.1| Photosystem I assembly protein Ycf3 [Medicag... 77 6e-16
gb|ERN02875.1| hypothetical protein AMTR_s00334p00015220 [Ambore... 78 6e-16
ref|XP_003620942.1| Photosystem I assembly protein Ycf3 [Medicag... 75 2e-15
ref|XP_003605620.1| Photosystem I assembly protein Ycf3 [Medicag... 74 6e-15
pir||A05190 hypothetical protein 77 - common tobacco chloroplast... 78 1e-12
ref|XP_002334707.1| predicted protein [Populus trichocarpa] gi|2... 53 3e-08
gb|EPS73911.1| hypothetical protein M569_00846 [Genlisea aurea] 52 5e-08
ref|YP_006503792.1| photosystem I assembly protein Ycf3 (chlorop... 49 2e-07
ref|YP_003359360.2| photosystem I assembly protein Ycf3 (chlorop... 48 3e-07
gb|ADD30875.1| putative RF3 protein [Plumbago auriculata] 47 7e-07
gb|AFR25661.1| hypothetical chloroplast RF34 (chloroplast) [Pent... 47 7e-07
gb|AFQ99063.1| hypothetical chloroplast RF34 (chloroplast) [Sedu... 47 7e-07
gb|AGQ50350.1| hypothetical chloroplast RF34 (chloroplast) [Rume... 47 7e-07
ref|YP_007890374.1| hypothetical chloroplast RF34 (chloroplast) ... 47 7e-07
ref|YP_007353916.1| photosystem I assembly protein Ycf3 (chlorop... 47 7e-07
gb|AFU96552.1| Ycf3, partial (chloroplast) [Viola pubescens] 47 7e-07
gb|AFU96550.1| Ycf3, partial (chloroplast) [Scyphostegia borneen... 47 7e-07
gb|AFU96544.1| Ycf3, partial (chloroplast) [Ploiarium sp. CCD-2012] 47 7e-07
gb|AFU96543.1| Ycf3, partial (chloroplast) [Phyllanthus urinaria] 47 7e-07
gb|AFU96539.1| Ycf3, partial (chloroplast) [Microdesmis casearii... 47 7e-07
>ref|XP_003599571.1| Photosystem I assembly protein Ycf3 [Medicago truncatula]
gi|355488619|gb|AES69822.1| Photosystem I assembly
protein Ycf3 [Medicago truncatula]
Length = 160
Score = 77.4 bits (189), Expect(2) = 6e-16
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = -3
Query: 167 RMR*ETLKYGSNGRNLLAYSDRGEQAIRQGDSEIAEAWFDQA 42
RM ETLKYGS GRNLL YSDRGEQAIRQGDSEIAE+WFDQA
Sbjct: 90 RMSQETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAESWFDQA 131
Score = 32.0 bits (71), Expect(2) = 6e-16
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 132 AEYWKQAIALTPG 144
>gb|ERN02875.1| hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda]
Length = 70
Score = 78.2 bits (191), Expect(2) = 6e-16
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = -3
Query: 164 MR*ETLKYGSNGRNLLAYSDRGEQAIRQGDSEIAEAWFDQA 42
MR ETLKYGS GRNL AYSDRGEQAIRQGDSEIAEAWFDQA
Sbjct: 1 MRSETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQA 41
Score = 31.2 bits (69), Expect(2) = 6e-16
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQA+ALTPG
Sbjct: 42 AEYWKQALALTPG 54
>ref|XP_003620942.1| Photosystem I assembly protein Ycf3 [Medicago truncatula]
gi|355495957|gb|AES77160.1| Photosystem I assembly
protein Ycf3 [Medicago truncatula]
Length = 70
Score = 75.5 bits (184), Expect(2) = 2e-15
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = -3
Query: 155 ETLKYGSNGRNLLAYSDRGEQAIRQGDSEIAEAWFDQA 42
ETLKYGS GRNLL YSDRGEQAIRQGDSEIAE+WFDQA
Sbjct: 4 ETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAESWFDQA 41
Score = 32.0 bits (71), Expect(2) = 2e-15
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 42 AEYWKQAIALTPG 54
>ref|XP_003605620.1| Photosystem I assembly protein Ycf3 [Medicago truncatula]
gi|355506675|gb|AES87817.1| Photosystem I assembly
protein Ycf3 [Medicago truncatula]
Length = 201
Score = 73.9 bits (180), Expect(2) = 6e-15
Identities = 36/42 (85%), Positives = 37/42 (88%)
Frame = -3
Query: 167 RMR*ETLKYGSNGRNLLAYSDRGEQAIRQGDSEIAEAWFDQA 42
RM ETLKYGS GRNLL SDRGEQAIRQGDSEIAE+WFDQA
Sbjct: 131 RMSQETLKYGSKGRNLLTNSDRGEQAIRQGDSEIAESWFDQA 172
Score = 32.0 bits (71), Expect(2) = 6e-15
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 173 AEYWKQAIALTPG 185
>pir||A05190 hypothetical protein 77 - common tobacco chloroplast
gi|225199|prf||1211235AD ORF 77
Length = 77
Score = 78.2 bits (191), Expect = 1e-12
Identities = 42/63 (66%), Positives = 46/63 (73%)
Frame = +3
Query: 6 GVSAIACFQYSACLIEPSFRNFRISLPNGLFSSVRIGEQIPSIRTVLESFLPHTAQQSIL 185
G + F + LIEPS NFRISL NGLFS IG IPS+RTVLE+FLPHTAQQSIL
Sbjct: 8 GSKRYSLFPILSGLIEPSLCNFRISLLNGLFSPAGIGSSIPSLRTVLENFLPHTAQQSIL 67
Query: 186 LVS 194
LVS
Sbjct: 68 LVS 70
>ref|XP_002334707.1| predicted protein [Populus trichocarpa]
gi|224119468|ref|XP_002331237.1| predicted protein
[Populus trichocarpa]
Length = 55
Score = 53.1 bits (126), Expect(2) = 3e-08
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -3
Query: 119 LAYSDRGEQAIRQGDSEIAEAWFDQA 42
LA+SDRGEQAIRQGDS+IAEAWFDQA
Sbjct: 1 LAFSDRGEQAIRQGDSKIAEAWFDQA 26
Score = 30.4 bits (67), Expect(2) = 3e-08
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAI LTPG
Sbjct: 27 AEYWKQAITLTPG 39
>gb|EPS73911.1| hypothetical protein M569_00846 [Genlisea aurea]
Length = 163
Score = 51.6 bits (122), Expect(2) = 5e-08
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -3
Query: 113 YSDRGEQAIRQGDSEIAEAWFDQA 42
YSDRGEQAIRQGDSEIAE WFDQA
Sbjct: 111 YSDRGEQAIRQGDSEIAEVWFDQA 134
Score = 30.8 bits (68), Expect(2) = 5e-08
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
A+YWKQAIALTPG
Sbjct: 135 AQYWKQAIALTPG 147
>ref|YP_006503792.1| photosystem I assembly protein Ycf3 (chloroplast) [Datura
stramonium] gi|350996427|gb|AEQ36939.1| photosystem I
assembly protein Ycf3 (chloroplast) [Datura stramonium]
gi|350996579|gb|AEQ37090.1| photosystem I assembly
protein Ycf3 [Datura stramonium]
Length = 170
Score = 48.9 bits (115), Expect(2) = 2e-07
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -3
Query: 113 YSDRGEQAIRQGDSEIAEAWFDQA 42
YS RGEQAI+QGDSEIAEAWFDQA
Sbjct: 118 YSGRGEQAIQQGDSEIAEAWFDQA 141
Score = 32.0 bits (71), Expect(2) = 2e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 142 AEYWKQAIALTPG 154
>ref|YP_003359360.2| photosystem I assembly protein Ycf3 (chloroplast) [Olea europaea]
gi|363413086|gb|ADA69927.2| photosystem I assembly
protein Ycf3 (chloroplast) [Olea europaea]
Length = 167
Score = 47.8 bits (112), Expect(2) = 3e-07
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3
Query: 125 NLLAYSDRGEQAIRQGDSEIAEAWFDQA 42
N +A RGEQAIRQGDSEIAEAWFDQA
Sbjct: 111 NNMAVICRGEQAIRQGDSEIAEAWFDQA 138
Score = 32.0 bits (71), Expect(2) = 3e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 139 AEYWKQAIALTPG 151
>gb|ADD30875.1| putative RF3 protein [Plumbago auriculata]
Length = 171
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQA 139
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 140 AEYWKQAIALTPG 152
>gb|AFR25661.1| hypothetical chloroplast RF34 (chloroplast) [Penthorum chinense]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>gb|AFQ99063.1| hypothetical chloroplast RF34 (chloroplast) [Sedum sarmentosum]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>gb|AGQ50350.1| hypothetical chloroplast RF34 (chloroplast) [Rumex acetosa]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>ref|YP_007890374.1| hypothetical chloroplast RF34 (chloroplast) [Ardisia polysticta]
gi|456367971|gb|AGG36885.1| hypothetical chloroplast
RF34 (chloroplast) [Ardisia polysticta]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>ref|YP_007353916.1| photosystem I assembly protein Ycf3 (chloroplast) [Tectona grandis]
gi|438687605|emb|CCP47131.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
gi|438688289|emb|CCP47220.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
gi|438688413|emb|CCP47309.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>gb|AFU96552.1| Ycf3, partial (chloroplast) [Viola pubescens]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>gb|AFU96550.1| Ycf3, partial (chloroplast) [Scyphostegia borneensis]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>gb|AFU96544.1| Ycf3, partial (chloroplast) [Ploiarium sp. CCD-2012]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>gb|AFU96543.1| Ycf3, partial (chloroplast) [Phyllanthus urinaria]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153
>gb|AFU96539.1| Ycf3, partial (chloroplast) [Microdesmis caseariifolia]
Length = 169
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3
Query: 104 RGEQAIRQGDSEIAEAWFDQA 42
RGEQAIRQGDSEIAEAWFDQA
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQA 140
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 40 AEYWKQAIALTPG 2
AEYWKQAIALTPG
Sbjct: 141 AEYWKQAIALTPG 153