BLASTX nr result
ID: Jatropha_contig00003019
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00003019
(255 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN7... 131 8e-34
ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus co... 122 2e-29
gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloropla... 118 2e-28
ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot escul... 117 6e-28
gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloropla... 117 6e-28
ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasili... 116 1e-27
gb|ABV65752.1| RNA polymerase beta'' subunit, partial (chloropla... 112 4e-27
gb|ABV65732.1| RNA polymerase beta'' subunit, partial (chloropla... 119 5e-27
gb|ABV65778.1| RNA polymerase beta'' subunit, partial (chloropla... 110 8e-27
gb|AEI27565.1| RNA polymerase beta subunit [Hovenia trichocarpa ... 113 1e-26
gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloropla... 109 2e-26
ref|YP_004072452.1| RNA polymerase beta II subunit [Corynocarpus... 112 2e-26
gb|AEH04472.1| RNA polymerase beta subunit [Rhizophora mangle] 114 3e-26
gb|ABV65724.1| RNA polymerase beta'' subunit, partial (chloropla... 111 3e-26
gb|ABV65780.1| RNA polymerase beta'' subunit, partial (chloropla... 108 5e-26
gb|ABV65747.1| RNA polymerase beta'' subunit, partial (chloropla... 107 7e-26
gb|ABV65706.1| RNA polymerase beta'' subunit, partial (chloropla... 105 7e-26
gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. s... 109 9e-26
gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloropla... 108 1e-25
gb|AEI27563.1| RNA polymerase beta subunit [Gouania mauritiana] 108 2e-25
>ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha
curcas]
Length = 1394
Score = 131 bits (330), Expect(2) = 8e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND
Sbjct: 836 SIQLVRTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 895
Query: 18 PSGSGP 1
PSGSGP
Sbjct: 896 PSGSGP 901
Score = 37.7 bits (86), Expect(2) = 8e-34
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGKLIRGISD+ +
Sbjct: 819 NYILYGNGKLIRGISDTSIQL 839
>ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus communis]
gi|339516155|gb|AEJ82545.1| RNA polymerase beta subunit
[Ricinus communis]
Length = 1405
Score = 122 bits (307), Expect(2) = 2e-29
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQ+KKSSSIEEARASFVEV+TNGLI DFLRINL KSHISYISRKRND
Sbjct: 835 SIQLVRTCLVLNWDQEKKSSSIEEARASFVEVNTNGLIRDFLRINLVKSHISYISRKRND 894
Query: 18 PSGSGP 1
PSGSGP
Sbjct: 895 PSGSGP 900
Score = 31.6 bits (70), Expect(2) = 2e-29
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYIL GNGK IRGISD+ +
Sbjct: 818 NYILSGNGKPIRGISDTSIQL 838
>gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixonanthes
icosandra x Ixonanthes cuneata]
Length = 1262
Score = 118 bits (295), Expect(2) = 2e-28
Identities = 60/65 (92%), Positives = 61/65 (93%)
Frame = -1
Query: 201 ASIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRN 22
ASIQLV TCLVLNWDQDKKSSSIEEARASFVEVSTNGLI DFL+INL KSHISYISRK N
Sbjct: 797 ASIQLVRTCLVLNWDQDKKSSSIEEARASFVEVSTNGLIRDFLKINLVKSHISYISRKGN 856
Query: 21 DPSGS 7
DPSGS
Sbjct: 857 DPSGS 861
Score = 33.5 bits (75), Expect(2) = 2e-28
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK I+GISD+ +
Sbjct: 781 NYILYGNGKPIQGISDASIQL 801
>ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta]
gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|157695875|gb|ABV66144.1| RNA polymerase beta subunit
[Manihot esculenta]
Length = 1393
Score = 117 bits (292), Expect(2) = 6e-28
Identities = 58/66 (87%), Positives = 60/66 (90%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEARA+FVE+STNGLI DFLRINL K HISYI RKRND
Sbjct: 831 SIQLVRTCLVLNWDQDKKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRND 890
Query: 18 PSGSGP 1
PSGS P
Sbjct: 891 PSGSEP 896
Score = 32.7 bits (73), Expect(2) = 6e-28
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYG GK IRGISD+ +
Sbjct: 814 NYILYGTGKPIRGISDTSIQL 834
>gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot
esculenta]
Length = 1281
Score = 117 bits (292), Expect(2) = 6e-28
Identities = 58/66 (87%), Positives = 60/66 (90%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEARA+FVE+STNGLI DFLRINL K HISYI RKRND
Sbjct: 801 SIQLVRTCLVLNWDQDKKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRND 860
Query: 18 PSGSGP 1
PSGS P
Sbjct: 861 PSGSEP 866
Score = 32.7 bits (73), Expect(2) = 6e-28
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYG GK IRGISD+ +
Sbjct: 784 NYILYGTGKPIRGISDTSIQL 804
>ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
gi|308523496|gb|ADO33546.1| RNA polymerase beta'' subunit
[Hevea brasiliensis]
Length = 1395
Score = 116 bits (290), Expect(2) = 1e-27
Identities = 58/64 (90%), Positives = 59/64 (92%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEARA FVE+STNGLI DFLRINL KSHISYI RKRND
Sbjct: 831 SIQLVRTCLVLNWDQDKKSSSIEEARAFFVEISTNGLIRDFLRINLVKSHISYIGRKRND 890
Query: 18 PSGS 7
PSGS
Sbjct: 891 PSGS 894
Score = 32.7 bits (73), Expect(2) = 1e-27
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYG GK IRGISD+ +
Sbjct: 814 NYILYGTGKPIRGISDTSIQL 834
>gb|ABV65752.1| RNA polymerase beta'' subunit, partial (chloroplast) [Leonia
glycycarpa]
Length = 1274
Score = 112 bits (279), Expect(2) = 4e-27
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEARASFV++STNGLI DFLRINL KSH YISRKRN
Sbjct: 798 SIQLVRTCLVLNWDQDKKSSSIEEARASFVKISTNGLIRDFLRINLVKSHFFYISRKRNG 857
Query: 18 PSGSG 4
PS SG
Sbjct: 858 PSSSG 862
Score = 35.0 bits (79), Expect(2) = 4e-27
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGISD+ +
Sbjct: 781 NYILYGNGKPIRGISDTSIQL 801
>gb|ABV65732.1| RNA polymerase beta'' subunit, partial (chloroplast) [Elatine
triandra]
Length = 692
Score = 119 bits (298), Expect(2) = 5e-27
Identities = 60/65 (92%), Positives = 60/65 (92%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKK SSIEEARASFVEV TNGLI DFLRINL KSHISYISRKRND
Sbjct: 211 SIQLVRTCLVLNWDQDKKGSSIEEARASFVEVRTNGLIRDFLRINLVKSHISYISRKRND 270
Query: 18 PSGSG 4
PSGSG
Sbjct: 271 PSGSG 275
Score = 27.3 bits (59), Expect(2) = 5e-27
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3
Query: 250 NYILYGNGKLIRGI 209
NYILY NGK IRGI
Sbjct: 190 NYILYENGKPIRGI 203
>gb|ABV65778.1| RNA polymerase beta'' subunit, partial (chloroplast) [Strasburgeria
robusta]
Length = 1281
Score = 110 bits (276), Expect(2) = 8e-27
Identities = 59/65 (90%), Positives = 60/65 (92%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEARASFVEVSTNGLI DFLRI+L KSHISYI RKRND
Sbjct: 799 SIQLVRTCLVLNWDQDKKSSSIEEARASFVEVSTNGLIRDFLRIDLVKSHISYI-RKRND 857
Query: 18 PSGSG 4
SGSG
Sbjct: 858 LSGSG 862
Score = 35.0 bits (79), Expect(2) = 8e-27
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGISD+ +
Sbjct: 782 NYILYGNGKPIRGISDTSIQL 802
>gb|AEI27565.1| RNA polymerase beta subunit [Hovenia trichocarpa var. robusta]
Length = 1254
Score = 113 bits (282), Expect(2) = 1e-26
Identities = 59/65 (90%), Positives = 60/65 (92%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKK+SSIEEARASFVEVSTNGLI DFLRINL KSHISYI RKRND
Sbjct: 791 SIQLVRTCLVLNWDQDKKTSSIEEARASFVEVSTNGLIRDFLRINLVKSHISYI-RKRND 849
Query: 18 PSGSG 4
P GSG
Sbjct: 850 PLGSG 854
Score = 32.3 bits (72), Expect(2) = 1e-26
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGIS + +
Sbjct: 774 NYILYGNGKPIRGISGTSIQL 794
>gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia
lucida]
Length = 1280
Score = 109 bits (273), Expect(2) = 2e-26
Identities = 58/65 (89%), Positives = 59/65 (90%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEA ASFVEVSTN LI DFLRI+L KSHISYI RKRND
Sbjct: 800 SIQLVRTCLVLNWDQDKKSSSIEEAPASFVEVSTNSLIRDFLRIDLVKSHISYI-RKRND 858
Query: 18 PSGSG 4
PSGSG
Sbjct: 859 PSGSG 863
Score = 35.0 bits (79), Expect(2) = 2e-26
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGISD+ +
Sbjct: 783 NYILYGNGKPIRGISDTSIQL 803
>ref|YP_004072452.1| RNA polymerase beta II subunit [Corynocarpus laevigata]
gi|309252880|gb|ADO60300.1| RNA polymerase beta II
subunit [Corynocarpus laevigata]
Length = 1380
Score = 112 bits (279), Expect(2) = 2e-26
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEEARASFVEVSTNGL+ DFLRI+L KSHISYI RKR D
Sbjct: 819 SIQLVRTCLVLNWDQDKKSSSIEEARASFVEVSTNGLVRDFLRIDLVKSHISYI-RKRKD 877
Query: 18 PSGSG 4
PSGSG
Sbjct: 878 PSGSG 882
Score = 32.3 bits (72), Expect(2) = 2e-26
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGIS + +
Sbjct: 802 NYILYGNGKPIRGISGTSIQL 822
>gb|AEH04472.1| RNA polymerase beta subunit [Rhizophora mangle]
Length = 1393
Score = 114 bits (285), Expect(2) = 3e-26
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSS++EA ASFVEVSTNG+I DFLRI+LAKSHISY+SRKRND
Sbjct: 833 SIQLVRTCLVLNWDQDKKSSSVKEAHASFVEVSTNGMIRDFLRIHLAKSHISYMSRKRND 892
Query: 18 PSGSG 4
P GSG
Sbjct: 893 PLGSG 897
Score = 29.6 bits (65), Expect(2) = 3e-26
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYIL G GK IRGISD+ +
Sbjct: 816 NYILCGTGKQIRGISDTSIQL 836
>gb|ABV65724.1| RNA polymerase beta'' subunit, partial (chloroplast) [Coriaria
nepalensis]
Length = 1283
Score = 111 bits (277), Expect(2) = 3e-26
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVL WDQDKKSSSIEEARASFVEVSTNGL+ DFLRI+LAKSHISYI RKR D
Sbjct: 802 SIQLVRTCLVLTWDQDKKSSSIEEARASFVEVSTNGLVRDFLRIDLAKSHISYI-RKRKD 860
Query: 18 PSGSG 4
PSGSG
Sbjct: 861 PSGSG 865
Score = 32.7 bits (73), Expect(2) = 3e-26
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGIS + +
Sbjct: 785 NYILYGNGKRIRGISGTSIQL 805
>gb|ABV65780.1| RNA polymerase beta'' subunit, partial (chloroplast) [Suriana
maritima]
Length = 1274
Score = 108 bits (269), Expect(2) = 5e-26
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKKSSSIEE ASFVEVSTNGLI DFLRI+L KSHISYI RKRND
Sbjct: 803 SIQLVRTCLVLNWDQDKKSSSIEETHASFVEVSTNGLIRDFLRIDLVKSHISYI-RKRND 861
Query: 18 PSGSG 4
SGSG
Sbjct: 862 ASGSG 866
Score = 35.0 bits (79), Expect(2) = 5e-26
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGISD+ +
Sbjct: 786 NYILYGNGKPIRGISDTSIQL 806
>gb|ABV65747.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixerba
brexioides]
Length = 1283
Score = 107 bits (266), Expect(2) = 7e-26
Identities = 57/64 (89%), Positives = 58/64 (90%)
Frame = -1
Query: 195 IQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDP 16
IQLV TCLVLNWDQDKKSSSIEEARASFVEVSTNGLI DFLRI+L KSHISYI RKRND
Sbjct: 801 IQLVRTCLVLNWDQDKKSSSIEEARASFVEVSTNGLIRDFLRIDLVKSHISYI-RKRNDL 859
Query: 15 SGSG 4
S SG
Sbjct: 860 SASG 863
Score = 35.8 bits (81), Expect(2) = 7e-26
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGISD++ +
Sbjct: 783 NYILYGNGKPIRGISDTRIQL 803
>gb|ABV65706.1| RNA polymerase beta'' subunit, partial (chloroplast) [Aphloia
theiformis]
Length = 1273
Score = 105 bits (261), Expect(2) = 7e-26
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQD KSSS+EEARASFVEVSTNGLI DFLRI+L KS I YI RKRND
Sbjct: 800 SIQLVRTCLVLNWDQDTKSSSMEEARASFVEVSTNGLIRDFLRIDLVKSPILYI-RKRND 858
Query: 18 PSGSG 4
PSGSG
Sbjct: 859 PSGSG 863
Score = 37.7 bits (86), Expect(2) = 7e-26
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGKLIRGISD+ +
Sbjct: 783 NYILYGNGKLIRGISDTSIQL 803
>gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. splendens]
Length = 814
Score = 109 bits (273), Expect(2) = 9e-26
Identities = 59/69 (85%), Positives = 59/69 (85%), Gaps = 3/69 (4%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYIS---RK 28
SIQLV TCLVLNWDQDKKSSSIEEARASFVEVSTNGLI DFLRINL KS I YIS R
Sbjct: 357 SIQLVRTCLVLNWDQDKKSSSIEEARASFVEVSTNGLIRDFLRINLLKSKIFYISSRTRN 416
Query: 27 RNDPSGSGP 1
RNDPSG GP
Sbjct: 417 RNDPSGLGP 425
Score = 32.7 bits (73), Expect(2) = 9e-26
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGN K IRGISD+ +
Sbjct: 340 NYILYGNSKPIRGISDTSIQL 360
>gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ochna
mossambicensis]
Length = 1268
Score = 108 bits (270), Expect(2) = 1e-25
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
+IQLV TCLVLNWDQDKKSSSIEEA ASFVEVSTNGLI DFLRI K HISYISRKRND
Sbjct: 797 NIQLVRTCLVLNWDQDKKSSSIEEAHASFVEVSTNGLIRDFLRI---KCHISYISRKRND 853
Query: 18 PSGSG 4
PSGSG
Sbjct: 854 PSGSG 858
Score = 33.5 bits (75), Expect(2) = 1e-25
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYI YGNGK IRGISD+ +
Sbjct: 780 NYIFYGNGKPIRGISDTNIQL 800
>gb|AEI27563.1| RNA polymerase beta subunit [Gouania mauritiana]
Length = 1246
Score = 108 bits (271), Expect(2) = 2e-25
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = -1
Query: 198 SIQLVSTCLVLNWDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRND 19
SIQLV TCLVLNWDQDKK+SSIEEA ASFVEVST GLI DFLRINL KSHISY SRKRND
Sbjct: 785 SIQLVRTCLVLNWDQDKKTSSIEEAHASFVEVSTKGLIRDFLRINLGKSHISY-SRKRND 843
Query: 18 PSGSG 4
P GSG
Sbjct: 844 PLGSG 848
Score = 32.3 bits (72), Expect(2) = 2e-25
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 250 NYILYGNGKLIRGISDSKYSI 188
NYILYGNGK IRGIS + +
Sbjct: 768 NYILYGNGKPIRGISGTSIQL 788