BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza36_contig00035875
         (709 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GAU10400.1 hypothetical protein TSUD_423410, partial [Trifolium ...   121   1e-29
GAU11845.1 hypothetical protein TSUD_75960 [Trifolium subterraneum]   101   2e-28
ABE80156.1 Ribonuclease H [Medicago truncatula]                        86   6e-28
GAU35137.1 hypothetical protein TSUD_394630 [Trifolium subterran...    96   3e-27
GAU50297.1 hypothetical protein TSUD_288310 [Trifolium subterran...   115   5e-26
GAU50246.1 hypothetical protein TSUD_188980 [Trifolium subterran...    84   7e-26
GAU12283.1 hypothetical protein TSUD_141910 [Trifolium subterran...   109   1e-25
GAU23316.1 hypothetical protein TSUD_237700 [Trifolium subterran...    81   8e-25
GAU18899.1 hypothetical protein TSUD_228890 [Trifolium subterran...    83   7e-24
GAU22350.1 hypothetical protein TSUD_106780 [Trifolium subterran...   109   8e-24
GAU35042.1 hypothetical protein TSUD_30080 [Trifolium subterraneum]   107   5e-23
GAU28886.1 hypothetical protein TSUD_293380 [Trifolium subterran...    87   2e-22
GAU26057.1 hypothetical protein TSUD_225190 [Trifolium subterran...   105   2e-22
GAU47648.1 hypothetical protein TSUD_27720 [Trifolium subterraneum]   105   2e-22
ABO80459.1 RNA-directed DNA polymerase (Reverse transcriptase); ...   104   4e-22
GAU12548.1 hypothetical protein TSUD_182620 [Trifolium subterran...    98   2e-21
GAU20604.1 hypothetical protein TSUD_33400 [Trifolium subterraneum]    75   4e-21
ABD28627.2 RNA-directed DNA polymerase (Reverse transcriptase); ...   101   7e-21
GAU33259.1 hypothetical protein TSUD_333820 [Trifolium subterran...    97   2e-20
GAU34698.1 hypothetical protein TSUD_29390 [Trifolium subterraneum]    92   6e-20

>GAU10400.1 hypothetical protein TSUD_423410, partial [Trifolium subterraneum]
          Length = 284

 Score =  121 bits (303), Expect = 1e-29
 Identities = 64/165 (38%), Positives = 89/165 (53%)
 Frame = -1

Query: 496 GSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQERW 317
           G  A  FLAG+W  W A+N  C+G   +   K++ EV  LV  I      + HT    RW
Sbjct: 57  GLNAPTFLAGLWWNWRARNIFCVGNASIHSFKVVAEVSKLVALIVFCFPARVHTDTPRRW 116

Query: 316 VIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTI 137
           + WH  +    VLNVD S +G+ G  GFG L R  +GEW+ G  G +G    + AE   +
Sbjct: 117 ISWHPCKTDCVVLNVDGSCLGDPGRAGFGGLFRKGDGEWIRGFSGYLGVTNIMLAELMAV 176

Query: 136 YYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
           Y+GL  A E G  R+ CYSDS+  L+L +   ++ H Y A+I+ I
Sbjct: 177 YHGLKIAREAGYNRLFCYSDSKTVLDLLSKERNSFHCYAAIIANI 221


>GAU11845.1 hypothetical protein TSUD_75960 [Trifolium subterraneum]
          Length = 386

 Score =  101 bits (252), Expect(2) = 2e-28
 Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 1/182 (0%)
 Frame = -1

Query: 544 FFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAI 365
           FFQ  D  S  ++ ++ S   LF+A IW  W  +N+ CL  E VP   L  +++I+  A+
Sbjct: 199 FFQEVDSSSWLRNGLSCSSMFLFMAAIWWIWRTRNALCLDNELVPQFSL--KMRIVDYAL 256

Query: 364 NLGSTVQHHTVRQ-ERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGC 188
            L +   ++ V    + V W+     + +LNVD SS+GN G  GFG L+    G W+ G 
Sbjct: 257 LLKNCHFNYQVTTLPKIVRWNALGGTSMILNVDRSSIGNPGISGFGGLICNAYGAWIHGF 316

Query: 187 YGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALIS 8
           +G++G    L AE   I  GL  AWE   + + CYSDS  A++L T  V   H Y A+++
Sbjct: 317 FGNLGVTNILHAELMAILKGLLLAWELNIKDLSCYSDSATAIKLITEPVDVWHHYAAILN 376

Query: 7   AI 2
            I
Sbjct: 377 NI 378



 Score = 52.4 bits (124), Expect(2) = 2e-28
 Identities = 28/63 (44%), Positives = 35/63 (55%)
 Frame = -2

Query: 708 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFFFNIR 529
           N LPT  +L  RGI     C RC  I  ET LHC+RDC+    +W+ LGF D  FF  + 
Sbjct: 146 NSLPTRDMLTHRGIIHGNMCPRCN-IHVETDLHCLRDCDFVYTIWKSLGFTDHNFFQEVD 204

Query: 528 TLS 520
           + S
Sbjct: 205 SSS 207


>ABE80156.1 Ribonuclease H [Medicago truncatula]
          Length = 438

 Score = 85.9 bits (211), Expect(2) = 6e-28
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
 Frame = -1

Query: 502 MAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQE 323
           M+ S   +F  G+W AW  +N  CL  E +   +L   +      I      + +    +
Sbjct: 209 MSSSLPDIFFGGLWWAWRHRNLMCLNNETMSLFRLCNNIVSAATYIKSAFDSEENVNHSD 268

Query: 322 RWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEP 146
           R+V W+      H+LNVD S +G     G+G +LR   G ++ G  G I  S + LQAE 
Sbjct: 269 RFVKWNNRNHHDHILNVDGSCLGTPSRTGYGGILRNSAGLFISGFSGFIPNSTDILQAEL 328

Query: 145 TTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
           T I+  L    +     ++CYSDS LA+ L        H Y  LI  I
Sbjct: 329 TAIHQSLHMVIDSNMNDVMCYSDSLLAVNLIMNDTPRYHTYAVLIQNI 376



 Score = 66.6 bits (161), Expect(2) = 6e-28
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = -2

Query: 708 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
           N +PT+ +LHRR I  SP CARC G  +ET LHCVRDC+    +WQ++GF    FF
Sbjct: 142 NVVPTLSLLHRRNIAPSPTCARC-GEEDETFLHCVRDCHFSRSIWQKIGFTGNDFF 196


>GAU35137.1 hypothetical protein TSUD_394630 [Trifolium subterraneum]
          Length = 547

 Score = 95.5 bits (236), Expect(2) = 3e-27
 Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 1/179 (0%)
 Frame = -1

Query: 544 FFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAI 365
           FFQ  D     ++ ++     +FLA +W  W A+N+ CL  E +P   L  +++I+  A+
Sbjct: 362 FFQEDDSYDWLRNGLSFPSMFIFLAAVWWIWRARNALCLNSELIPLFAL--KLRIMDYAL 419

Query: 364 NLGSTVQH-HTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGC 188
            L +   + H     + V W+       +LNV+ SS+GN G  GFG L+R  +G  + G 
Sbjct: 420 LLRNCQSNLHETSIPKLVKWNAGGTDM-ILNVEGSSIGNPGIYGFGGLIRNADGACVHGF 478

Query: 187 YGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALI 11
           +G++G    L AE   IY GL  AWE   + + CYSDS + ++L T  V   H Y  ++
Sbjct: 479 FGNLGVTNILHAELMAIYKGLLLAWELNIKDLWCYSDSEMVIKLITEPVDEWHHYATIL 537



 Score = 54.7 bits (130), Expect(2) = 3e-27
 Identities = 26/56 (46%), Positives = 34/56 (60%)
 Frame = -2

Query: 708 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
           N LPT ++L  RGI Q   C RC  + E T LHC+RDC+    +W+ +GF D  FF
Sbjct: 309 NSLPTSEMLSHRGILQGNLCPRCNTLAE-TTLHCLRDCDFVQIIWKSIGFSDLNFF 363


>GAU50297.1 hypothetical protein TSUD_288310 [Trifolium subterraneum]
          Length = 545

 Score =  115 bits (288), Expect = 5e-26
 Identities = 69/213 (32%), Positives = 108/213 (50%)
 Frame = -1

Query: 649 CSMSRNCGRNCSSLCKGL*LTWTDVATVGILGPSFFFQH*DFISRHQDAMAGSKAVLFLA 470
           C++      +C   C+ +   W     +G LG +FF Q  +     ++++ G  + LF+A
Sbjct: 273 CNIEEESTLHCLRNCEFIKRFWK---AIGFLGQTFF-QGDNLNDWLRNSIDGPSSFLFMA 328

Query: 469 GIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAP 290
            +W  WCA+N  C+  E +    L    + L + + +   ++ +       V W+     
Sbjct: 329 AVWWIWCARNQLCMDNEAISYFTLRTNTENLAQLLRM-CFIKQNISSTATMVRWNAHGGI 387

Query: 289 AHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWE 110
             +LNVD SS+GN G  GFG L+R  +G W+ G  G+IG    LQAE   IY+GL  AWE
Sbjct: 388 GMILNVDGSSIGNPGISGFGGLIRNSDGAWVHGFAGNIGHLNILQAELLAIYHGLVLAWE 447

Query: 109 YG*RRIVCYSDSRLALELSTTSVSANHVYVALI 11
              + + CYSDS+ AL+L    V+  H Y A+I
Sbjct: 448 LDIKDLCCYSDSKTALKLIYDHVNEWHQYAAII 480


>GAU50246.1 hypothetical protein TSUD_188980 [Trifolium subterraneum]
          Length = 458

 Score = 84.3 bits (207), Expect(2) = 7e-26
 Identities = 61/190 (32%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
 Frame = -1

Query: 568 VGILGPSFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIRE 389
           +G + P FF    D     +    GS+A  F   +W AW  QN  CL  E    ++L   
Sbjct: 208 LGFITPDFFSSS-DAHEWLKFGSTGSQAFAFSTSVWWAWRHQNLMCLQNETWSINRLSFN 266

Query: 388 VKILVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHE 209
           ++ +   I    + +  T  +E  V W+ +  P  +LNVD S +G+    GFG ++R   
Sbjct: 267 IQSMSATITSCFSSRSTTTSEEIHVKWNNNNFPGVILNVDGSCLGSPVRAGFGGVIRNES 326

Query: 208 GEWLVGCYGSI-GSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSAN 32
           G +L G  G I GS + L AE   IY  L+ A       +VCYSDS   + L        
Sbjct: 327 GFYLSGFSGFIQGSSDILLAELFVIYKSLTLAKNMAIDELVCYSDSLHCINLIKGPSIKY 386

Query: 31  HVYVALISAI 2
           HVY  LI  I
Sbjct: 387 HVYAVLIQDI 396



 Score = 61.2 bits (147), Expect(2) = 7e-26
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = -2

Query: 708 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
           N +PT+ +LH R +  S NC RC    EET LHCVRDC+L   +W +LGF  P FF
Sbjct: 162 NSVPTLSLLHHRRMNPSSNCPRCC-THEETFLHCVRDCDLSRPIWHRLGFITPDFF 216


>GAU12283.1 hypothetical protein TSUD_141910 [Trifolium subterraneum]
          Length = 1049

 Score =  109 bits (272), Expect(2) = 1e-25
 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 3/184 (1%)
 Frame = -1

Query: 544  FFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKL---IREVKILV 374
            FFQ  D     ++ +  S   LF+A IW  W A+N+ CL  E +  + L   I +  +L+
Sbjct: 808  FFQGDDPYVWIRNGLHCSSMFLFMATIWWIWRARNALCLNSESILFYSLKLRIMDYALLI 867

Query: 373  EAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLV 194
            E  +      HH     + V W+       +LNVD SS+GN G  GFG L+   +G W++
Sbjct: 868  ENCHSN----HHDTSTSKLVKWNALGGTGMILNVDGSSLGNPGISGFGGLIHNADGAWVL 923

Query: 193  GCYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVAL 14
            G +G++G    L AE   IY GL  AW+   + + CYSDS +A++L + SV   H Y A+
Sbjct: 924  GFFGNLGVNNILHAELRAIYKGLLLAWDLNIKDLWCYSDSEMAIKLISESVDQWHHYAAI 983

Query: 13   ISAI 2
            ++ I
Sbjct: 984  LNNI 987



 Score = 35.4 bits (80), Expect(2) = 1e-25
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 624 ETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
           ET LHC+RDC+    +W+ +GF +  FF
Sbjct: 782 ETTLHCLRDCDFAQSIWKSIGFSNLNFF 809


>GAU23316.1 hypothetical protein TSUD_237700 [Trifolium subterraneum]
          Length = 418

 Score = 81.3 bits (199), Expect(2) = 8e-25
 Identities = 57/166 (34%), Positives = 74/166 (44%), Gaps = 1/166 (0%)
 Frame = -1

Query: 496 GSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQERW 317
           GSKA +F AG+W +W   N  CL  E                           T   +R 
Sbjct: 218 GSKAFIFSAGVWWSWRNHNLMCLNNE---------------------------TWTVDRV 250

Query: 316 VIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEPTT 140
           V W+ +     +LNVDES +G+    GFG + R   G +L G  G I GS + + AEP  
Sbjct: 251 VKWNNNNFSGVILNVDESCLGSPIRSGFGGIFRNDSGFYLSGFSGFIQGSSDIMLAEPYA 310

Query: 139 IYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
           IY+GLS A +      VCYSDS   + L T      HV+  LI  I
Sbjct: 311 IYHGLSLAEDMEINEFVCYSDSLHRINLITGLTLKYHVHAVLIQDI 356



 Score = 60.8 bits (146), Expect(2) = 8e-25
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = -2

Query: 708 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFFFNIR 529
           N +PT+ +L  R +  S  CARC G+ EET LHCVRDC+    +W  +GF +P FF    
Sbjct: 149 NSVPTLSLLDHRKMNLSATCARC-GLREETFLHCVRDCDFSISIWHHIGFDNPDFF---S 204

Query: 528 TLSAGTRMPW--QGRKQFCF 475
           ++ A   + W   G K F F
Sbjct: 205 SMDAHDWLKWGSTGSKAFIF 224


>GAU18899.1 hypothetical protein TSUD_228890 [Trifolium subterraneum]
          Length = 1098

 Score = 82.8 bits (203), Expect(2) = 7e-24
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
 Frame = -1

Query: 490  KAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQERWVI 311
            + +LFLAG+W  W  +N+ CLG E     +L   +  +VE +         T    R + 
Sbjct: 874  RRLLFLAGVWWIWRHRNNMCLGDETWSAVRLSCNIYSMVEDLK-NCFPSSTTEETSRCIK 932

Query: 310  WHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEPTTIY 134
            W+ +     V+N D S  G     GFG ++R ++G ++ G  G I  S + L AE + IY
Sbjct: 933  WNFTNFTGVVINTDGSCSGTPARTGFGCIIRNNDGRYITGASGHITNSSDILLAELSGIY 992

Query: 133  YGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
            +GL  A   G    +CY+DS ++  L     S  H+Y  LI  I
Sbjct: 993  HGLQLAISLGITDFICYTDSLISCNLIQGVSSPYHIYGVLIQNI 1036



 Score = 56.2 bits (134), Expect(2) = 7e-24
 Identities = 27/54 (50%), Positives = 32/54 (59%)
 Frame = -2

Query: 702 LPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
           +PT+ +LH R I  SP C RC     ET LHCVRDC     +W QLGF +  FF
Sbjct: 805 VPTLAMLHHRNIASSPICPRCSNH-NETFLHCVRDCIHSKTVWDQLGFTNSSFF 857


>GAU22350.1 hypothetical protein TSUD_106780 [Trifolium subterraneum]
          Length = 1200

 Score =  109 bits (273), Expect = 8e-24
 Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 1/217 (0%)
 Frame = -1

Query: 649  CSMSRNCGRNCSSLCKGL*LTWTDVATVGILGPSFFFQH*DFISRHQDAMAGSKAVLFLA 470
            CS       +C   C  +   W    ++G L  +FF Q  D  +   + +     +LF+A
Sbjct: 983  CSNHAETTIHCLRDCDFVNRIWK---SIGFLDQNFF-QGVDVYAWLHNGLNSPTMMLFIA 1038

Query: 469  GIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTV-QHHTVRQERWVIWHQSRA 293
            GIW  W A+N+ CL  E V      ++++I+  A+ L +     H +   ++V W+    
Sbjct: 1039 GIWWIWRARNAMCLDSEMVSFWS--QKLRIMDYALLLKNCYFSTHEISTTKFVKWNALGG 1096

Query: 292  PAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAW 113
               +LNVD SS+GN G  GFG L+R  +G W+ G +G++G    L  E   IY GL  AW
Sbjct: 1097 TGLILNVDGSSIGNPGISGFGGLIRNADGAWIHGFFGNLGVTNILHPELMAIYKGLLLAW 1156

Query: 112  EYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
            E   + + CYSDS++A++L T      H Y A+++ I
Sbjct: 1157 ELNIKELWCYSDSKMAIKLITDPTDVWHHYAAILNNI 1193


>GAU35042.1 hypothetical protein TSUD_30080 [Trifolium subterraneum]
          Length = 724

 Score =  107 bits (267), Expect = 5e-23
 Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
 Frame = -1

Query: 544  FFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAI 365
            FFQ  D  S  ++ ++ S   LF+A IW  W  +N+ CL  E +P   L  +++I+  A+
Sbjct: 483  FFQEVDSSSWLRNGLSCSSMFLFMAAIWWIWRTRNALCLDNELIPQFSL--KMRIVDYAL 540

Query: 364  NLGSTVQHHTVRQ-ERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGC 188
             L +   +H V    + V W+     + +LNVD S++GN G  GFG L+R  +G W+ G 
Sbjct: 541  LLKNCHFNHQVTTLPKIVRWNALGGTSMILNVDGSTIGNPGISGFGGLIRNADGAWIHGF 600

Query: 187  YGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALIS 8
            +G++G    L AE   I  GL  AWE   + ++CYSDS  A++L T  V   H Y A+++
Sbjct: 601  FGNLGVTNILHAELMAILKGLLLAWELNIKDLLCYSDSATAIKLITEPVDVWHHYAAILN 660

Query: 7    AI 2
             I
Sbjct: 661  NI 662


>GAU28886.1 hypothetical protein TSUD_293380 [Trifolium subterraneum]
          Length = 286

 Score = 87.4 bits (215), Expect(2) = 2e-22
 Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
 Frame = -1

Query: 568 VGILGPSFFFQH*DFISRHQDAMAGSK-----AVLFLAGIWRAWCAQNSKCLGGEDVPCH 404
           +G + P FF         H+    GS      A  F AG+W AW  +N  CL  E    +
Sbjct: 34  LGFITPDFF----SLSDAHEWLKFGSTGSQAFAFSFSAGVWWAWRHRNLMCLQNETWSIN 89

Query: 403 KLIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRL 224
           +L   ++ ++  I    + +  T  +E  + W+ +  P  +LNVD S +G+    GFG +
Sbjct: 90  RLSFNIQSMIATITSCFSSRSTTTSEEIHIKWNNNNFPGVILNVDGSCLGSPVRAGFGGV 149

Query: 223 LRTHEGEWLVGCYGSI-GSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTT 47
           +R   G +L G  G I GS + L AE   IY GL+ A       +VCYSDS   + L   
Sbjct: 150 IRNESGFYLSGFSGFIQGSSDILLAELFAIYKGLTLAKNMAIDELVCYSDSLHCINLIKG 209

Query: 46  SVSANHVYVALISAI 2
                HVYV LI  I
Sbjct: 210 PSIKYHVYVVLIQDI 224



 Score = 47.0 bits (110), Expect(2) = 2e-22
 Identities = 23/40 (57%), Positives = 25/40 (62%)
 Frame = -2

Query: 660 SPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
           S NC R  G  EET LHCVRDC+L   +W  LGF  P FF
Sbjct: 4   SSNCPR-YGTHEETFLHCVRDCDLSRPIWHHLGFITPDFF 42


>GAU26057.1 hypothetical protein TSUD_225190 [Trifolium subterraneum]
          Length = 536

 Score =  105 bits (262), Expect = 2e-22
 Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
 Frame = -1

Query: 481 LFLAGIWRAWCAQNSKCLGGEDVPCHKL---IREVKILVEAINLGSTVQHHTVRQERWVI 311
           LF+A IW  W  +N+ CL  + +P + L   I +  +L+E  +      HH     + V 
Sbjct: 371 LFMATIWWIWRTRNALCLNSDPIPFYSLKLRIMDYALLIENCHSN----HHDTSTSKLVK 426

Query: 310 WHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYY 131
           W+     + +LNVD SS+GN G  GFG L+R  +G W+ G +G++G    L A+   IY 
Sbjct: 427 WNVLGGTSMILNVDGSSLGNPGISGFGGLIRNADGAWVHGFFGNLGVNNILHAKLMAIYK 486

Query: 130 GLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
           GL  AWE   + + CYSDS +A++L +  V   H Y A+ + I
Sbjct: 487 GLLLAWELNIKDLWCYSDSEMAIKLISEPVDQWHHYTAIFNNI 529


>GAU47648.1 hypothetical protein TSUD_27720 [Trifolium subterraneum]
          Length = 521

 Score =  105 bits (261), Expect = 2e-22
 Identities = 58/180 (32%), Positives = 88/180 (48%)
 Frame = -1

Query: 550 SFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVE 371
           S FF+  +F     + +     +LF A IW  WC +N+ C+  E +    L   ++    
Sbjct: 278 SIFFEDDEFYVWLWNGLDSPSKLLFTAAIWWIWCTRNNLCMNNESISQVSLRMRIEDYAH 337

Query: 370 AINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVG 191
            +         T+   + V W+   +P  +LNVD SS+GN G  GFG L+   +G W  G
Sbjct: 338 LLR-ACLFNQITMSNTKLVKWNALGSPDMILNVDGSSIGNPGVSGFGGLIHNSKGAWAHG 396

Query: 190 CYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALI 11
             G+IG    L AE   +Y+GL  AW+   + + CYSDS  A++L T  V   H Y A++
Sbjct: 397 FVGNIGFSNILHAELMALYHGLLLAWQLNIKELWCYSDSETAIKLITEPVDEWHHYAAIL 456


>ABO80459.1 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score =  104 bits (260), Expect = 4e-22
 Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
 Frame = -1

Query: 649  CSMSRNCGRNCSSLCKGL*LTWTDVATVGILGPSFFFQH*DFISRHQDAMAGSKAVLFLA 470
            C +S     +C   C    + W  +         +FF   D     +  + GSKA+LF A
Sbjct: 595  CGVSDESVFHCIRDCPFSKIIWHHIG----FSEPYFFAVTDIEIWCKSGLIGSKAILFAA 650

Query: 469  GIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAP 290
            G+W  W ++N++C+  E +   +L   +   V+ IN         +  +R+V W+ S   
Sbjct: 651  GLWWIWRSRNARCMSEESMLLQRLAANITYFVDDINSCFFQPLPVMVSDRYVKWNNSNFN 710

Query: 289  AHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEPTTIYYGLSTAW 113
              +LNVD S +G+    GFG L+R   G +L G  G +  S + L AE T IY G++TA 
Sbjct: 711  CTILNVDGSCIGSPIRAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAELTAIYDGINTAI 770

Query: 112  EYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
            + G   +  YSDS L++ L TT+ S  H++ ALI  I
Sbjct: 771  DMGITDMAVYSDSLLSINLITTTSSKFHIHAALIQDI 807



 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = -2

Query: 702 LPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
           LPT  +LH R I  S  CARC G+ +E+V HC+RDC     +W  +GF +P FF
Sbjct: 575 LPTAALLHHRQIIASATCARC-GVSDESVFHCIRDCPFSKIIWHHIGFSEPYFF 627


>GAU12548.1 hypothetical protein TSUD_182620 [Trifolium subterraneum]
          Length = 236

 Score = 98.2 bits (243), Expect = 2e-21
 Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 1/182 (0%)
 Frame = -1

Query: 544 FFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAI 365
           FFQ  D  S  +  ++ S  +LF+AGIW  W  +N  CL  E +    L  +++I+  A+
Sbjct: 52  FFQGYDAYSWLRYDLSSSALLLFIAGIWWIWRVRNVLCLDSEMISFCPL--KLRIMDYAL 109

Query: 364 NLGSTVQH-HTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGC 188
            L +   + H     + V W+       +LNVD SS+GN     F  L+R  +G W+ G 
Sbjct: 110 LLKNCYFNTHETLITKLVKWNALGGTGMILNVDGSSIGNPSISSFRGLIRNADGAWVRGF 169

Query: 187 YGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALIS 8
           +G++G    L AE   IY GL  AWE   + + CYSDS++A++L T  + A H Y  +++
Sbjct: 170 FGNLGVTNILHAELMPIYKGLLLAWELNMKDMWCYSDSKMAIKLITDPIDAWHHYAVILN 229

Query: 7   AI 2
            I
Sbjct: 230 NI 231


>GAU20604.1 hypothetical protein TSUD_33400 [Trifolium subterraneum]
          Length = 1174

 Score = 74.7 bits (182), Expect(2) = 4e-21
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
 Frame = -1

Query: 481  LFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQERWVIWHQ 302
            +F+AG+W  W  +N  CL  E     ++   +  + + +              R V W+ 
Sbjct: 952  VFMAGVWWLWRHRNLMCLSNETWSFVRISCNIYSMGDTLKTCFPSSSPEETSNRTVKWNS 1011

Query: 301  SRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEPTTIYYGL 125
            +     +LN+D S  G     GFG ++R + G ++ G  G I GS + L AE + I++GL
Sbjct: 1012 TDFTGFILNMDGSCSGTPIRCGFGCIIRNNVGSYIAGASGHIIGSSDILLAELSGIFHGL 1071

Query: 124  STAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
              A   G   ++CY+DS L+  L     S  H+Y  LI  I
Sbjct: 1072 KLASSLGITDLICYTDSLLSCNLIQGPYSHYHIYGVLIQNI 1112



 Score = 55.1 bits (131), Expect(2) = 4e-21
 Identities = 26/54 (48%), Positives = 32/54 (59%)
 Frame = -2

Query: 702  LPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 541
            +PT+ +LH R I   P C RC G   ET LHCVRDC     +W +LGF   +FF
Sbjct: 880  VPTLSMLHHRNIASCPICTRC-GQQIETFLHCVRDCIFSRPVWIRLGFTSRIFF 932


>ABD28627.2 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  101 bits (251), Expect = 7e-21
 Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 13/223 (5%)
 Frame = -1

Query: 631  CGRN------CSSLCKGL*LTWTDVATVGILGPSFFFQH*DFISRHQDAM----AGSKAV 482
            CG N      C   CK     W  +   G +  +FF      +S  QD +    +GS+A+
Sbjct: 1021 CGENDESFLHCVRDCKHSAAIWHKL---GFVTAAFFS-----VSSVQDWIRNFSSGSRAI 1072

Query: 481  LFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQE--RWVIW 308
             FLAG+W +W  +N  CL  E  P  ++   +   + AI   + V+ + ++ +  R V W
Sbjct: 1073 TFLAGLWWSWRHRNLMCLSNETWPLTRISFRINDSINAIR-SAFVKSNVIQPDSARMVKW 1131

Query: 307  HQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIG-SPESLQAEPTTIYY 131
            +Q     H+LNVD S +G     GFG + R + G +L G  G I  S + L AE T ++ 
Sbjct: 1132 NQGNHQCHILNVDGSCLGTPIRAGFGGIFRNNVGGYLSGYSGFISESTDILLAELTALHQ 1191

Query: 130  GLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
            GL  A E G   + CYSDS L + L T + S  H Y  LI  I
Sbjct: 1192 GLIMAAEMGIEELACYSDSLLTINLITRTTSKYHTYAVLIQDI 1234


>GAU33259.1 hypothetical protein TSUD_333820 [Trifolium subterraneum]
          Length = 284

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
 Frame = -1

Query: 496 GSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAIN--LGSTVQHHTVRQE 323
           G  A  FLAG+W  W A+N  C+G   +   K++ EV  LV  I     + V+  T R  
Sbjct: 63  GLNAPTFLAGLWWNWRARNICCVGNASIHSFKVVAEVSKLVALIVSCFPAWVRTDTPRV- 121

Query: 322 RWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPT 143
                   +    VLNVD S +G+ G  GFG L R  +GEW+ G  G +G      AE  
Sbjct: 122 -------CKTDCVVLNVDGSCLGDPGRAGFGGLFRKGDGEWIRGSSGYLGVTNITLAELM 174

Query: 142 TIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 2
            +Y+GL  A E G  R+ CYSDS+  L+L +   ++ H Y A+I+ I
Sbjct: 175 AVYHGLKIAREAGYNRLFCYSDSKTVLDLLSKERNSFHCYAAIIANI 221


>GAU34698.1 hypothetical protein TSUD_29390 [Trifolium subterraneum]
          Length = 146

 Score = 92.0 bits (227), Expect = 6e-20
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
 Frame = -1

Query: 475 LAGIWRAWCAQNSKCLGGEDVPCHKL---IREVKILVEAINLGSTVQHHTVRQERWVIWH 305
           +A +W  W A+ + CL  E +P   L   I +  +L+E  +      HH     + V W+
Sbjct: 1   MAAVWWIWRARIALCLNSESIPLCSLKLRIMDYTLLIENCHSN----HHDTPSAKLVKWN 56

Query: 304 QSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGL 125
                  +LNVD SS+ N G  GF  L+R  +G W+ G +G++G  + L  +  TIY GL
Sbjct: 57  ALEGTGMILNVDGSSIDNPGISGFRGLIRNADGAWVHGFFGNLGVTKILHTKLMTIYKGL 116

Query: 124 STAWEYG*RRIVCYSDSRLALELSTTSV 41
             AWE   + + CYSDS +A++L+T  V
Sbjct: 117 LLAWELNIKDLWCYSDSEMAIKLTTEPV 144