BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza36_contig00012569
         (2641 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_004489339.1 PREDICTED: chloroplastic group IIA intron splicin...  1152   0.0  
XP_019442595.1 PREDICTED: CRM-domain containing factor CFM2, chl...  1142   0.0  
OIW12416.1 hypothetical protein TanjilG_04165 [Lupinus angustifo...  1137   0.0  
XP_015967744.1 PREDICTED: CRM-domain containing factor CFM2, chl...  1125   0.0  
XP_016203225.1 PREDICTED: CRM-domain containing factor CFM2, chl...  1123   0.0  
XP_003618343.2 group IIA intron splicing facilitator CRS1 [Medic...  1099   0.0  
XP_007151135.1 hypothetical protein PHAVU_004G020800g [Phaseolus...  1073   0.0  
XP_003554854.1 PREDICTED: chloroplastic group IIA intron splicin...  1061   0.0  
KJB33714.1 hypothetical protein B456_006G027700 [Gossypium raimo...   962   0.0  
EOY02282.1 CRM family member 2, putative isoform 2 [Theobroma ca...   961   0.0  
XP_012483760.1 PREDICTED: chloroplastic group IIA intron splicin...   957   0.0  
XP_012483761.1 PREDICTED: chloroplastic group IIA intron splicin...   957   0.0  
XP_018823102.1 PREDICTED: CRM-domain containing factor CFM2, chl...   956   0.0  
XP_017975690.1 PREDICTED: CRM-domain containing factor CFM2, chl...   954   0.0  
XP_012483758.1 PREDICTED: chloroplastic group IIA intron splicin...   954   0.0  
XP_016672839.1 PREDICTED: CRM-domain containing factor CFM2, chl...   953   0.0  
XP_017975689.1 PREDICTED: CRM-domain containing factor CFM2, chl...   952   0.0  
XP_016672841.1 PREDICTED: CRM-domain containing factor CFM2, chl...   952   0.0  
XP_016668306.1 PREDICTED: CRM-domain containing factor CFM2, chl...   951   0.0  
XP_016672837.1 PREDICTED: CRM-domain containing factor CFM2, chl...   949   0.0  

>XP_004489339.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Cicer arietinum]
          Length = 1019

 Score = 1152 bits (2979), Expect = 0.0
 Identities = 613/943 (65%), Positives = 699/943 (74%), Gaps = 82/943 (8%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVP--GKGFAALSENXXXXXXXXXXXXXXXX 2414
            GEIFVPLPH LPK RVGHT+D SWSTPENPVP  G G   LSEN                
Sbjct: 82   GEIFVPLPHNLPKYRVGHTLDPSWSTPENPVPFPGAGIEKLSENEVERQRLERAKAREEK 141

Query: 2413 XXXXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEV 2234
                     PT+AELSLT+ EIMRL KLGF MK+K+KVGKAGITEGIVNGIHERWR  EV
Sbjct: 142  KRR-----VPTLAELSLTDGEIMRLTKLGFEMKQKIKVGKAGITEGIVNGIHERWRRSEV 196

Query: 2233 VKIVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENN 2054
            V+IVCEDLCR NMKRTHD+LERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRD+  
Sbjct: 197  VRIVCEDLCRINMKRTHDILERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDDKI 256

Query: 2053 GDAMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGE 1874
             DA+QHMDGDDKNC+E+ES+SSEMNS THA  +SN +T KPAL+QGVGTPNKVRFQLPGE
Sbjct: 257  DDALQHMDGDDKNCDERESYSSEMNSTTHASHSSNIRTVKPALVQGVGTPNKVRFQLPGE 316

Query: 1873 AELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDE 1694
            AEL+E+ D LLEGLGP+FTDWWGYDP+PVDADLLPAVIPGFR+PFRLLPYGVKS LTDDE
Sbjct: 317  AELLEEVDSLLEGLGPRFTDWWGYDPVPVDADLLPAVIPGFRQPFRLLPYGVKSNLTDDE 376

Query: 1693 MTTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEI 1514
            +TTL+RLGRPLP HFALGRN KLQGLAAAIIKLWERCEI KIAVKRGVQNT ++ MAEEI
Sbjct: 377  LTTLKRLGRPLPCHFALGRNRKLQGLAAAIIKLWERCEIAKIAVKRGVQNTSNKIMAEEI 436

Query: 1513 KYLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTNKLKAENSSS--------- 1361
            K+LTGGTLLSR+ + IV YRGKDFLPAA SSAI+QRRN++ NK+KAENSSS         
Sbjct: 437  KHLTGGTLLSRDKDVIVIYRGKDFLPAAASSAIQQRRNVLINKVKAENSSSVTVSPHSEA 496

Query: 1360 --------DAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPPEQEIV 1205
                      +I++R+ TKA+AA+KRTS KLS                    SP EQEI 
Sbjct: 497  KDMAFLKDTEIIEKRIMTKAKAAIKRTSIKLSQALEKKAKAEKLLAILEKVESPQEQEID 556

Query: 1204 KEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQGSLESV 1025
            KEGITEEERYMLR+IGLKM PFLLLGRRGVFDGTVENMHLHWKYRELVKIIC QGSLESV
Sbjct: 557  KEGITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQGSLESV 616

Query: 1024 HQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKRSIEAQ 845
            HQ A TLEAESGGILVAVERV+KG+AIIVYRGKNYSRPS LRP+TLLNKKQALKRSIEAQ
Sbjct: 617  HQTALTLEAESGGILVAVERVSKGHAIIVYRGKNYSRPSCLRPRTLLNKKQALKRSIEAQ 676

Query: 844  RCESLKLHVLKLDKNINELKRQMVKDEANSKQIAEELRSDMATDRHEACSDSINCNSPKE 665
            R E+LKLHVLKLDKNINELK QMVKDEA+SKQIAE LRSD+A D+H   S+SINCNSPKE
Sbjct: 677  RREALKLHVLKLDKNINELKLQMVKDEASSKQIAETLRSDLAIDKHGGSSNSINCNSPKE 736

Query: 664  ASVDNQQAIQEQPVELID--SGGARQSEPESSAGLIHKEKQLDEVNDSVVD--TGHCVSN 497
            ASV NQQAI+EQ +ELID  S  +        A + ++++ ++E +  ++D  + + +S+
Sbjct: 737  ASVHNQQAIEEQHIELIDGVSSNSLNCNSSKEASVDNQQQAIEEQHIELIDGASSNLISS 796

Query: 496  NKAMEXXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLL----------------- 368
             +                     G+  G P  S  L ++ER L                 
Sbjct: 797  PEEASVGNQRAIQEQYIELIDTGGARQGEPESSAGLVHQERQLDEESDSVVDTGHCVSNN 856

Query: 367  --------------------LRKQALKIKKR----------------------PVLAIGK 314
                                + K ++++  R                      P+LAIGK
Sbjct: 857  KAMEASVASLKSDPEPSAPVINKSSIELPSRSLYLSNRERLLLRRQALNMKKRPLLAIGK 916

Query: 313  SNIMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILY 134
            SN +TG+AKAI  HF+KHPF IVNVKGRAKGTSV E+VS+LE ATGAVLVSQEPSKIILY
Sbjct: 917  SNTVTGLAKAIKDHFRKHPFVIVNVKGRAKGTSVHELVSKLEHATGAVLVSQEPSKIILY 976

Query: 133  RGWGAGQEPSTAINDNKVGKNGGEKPSVSPELLQAIRLECGLQ 5
            RGWGAG +P T +ND+K+GK+GG KP+VSPELL+AIR+ECGLQ
Sbjct: 977  RGWGAGTKPGTYLNDSKLGKDGGAKPTVSPELLEAIRIECGLQ 1019


>XP_019442595.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic [Lupinus
            angustifolius]
          Length = 1009

 Score = 1142 bits (2955), Expect = 0.0
 Identities = 615/936 (65%), Positives = 704/936 (75%), Gaps = 75/936 (8%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVP--GKGFAALSENXXXXXXXXXXXXXXXX 2414
            G+IFVPLPHQLPK RVGHTID SWST +NPVP  G G + L +N                
Sbjct: 80   GKIFVPLPHQLPKYRVGHTIDSSWSTFDNPVPVPGTGISLLRQNELASVAKQQKKKEVEE 139

Query: 2413 XXXXXXXEAPTVAELSLTEAEIMRLRKLGFG--MKKKLKVGKAGITEGIVNGIHERWRSH 2240
                    APT+AEL+L+++EI RL  LG G  MK+KLKVGKAGITEGIVNGIHERW+  
Sbjct: 140  SR------APTLAELNLSKSEIRRLTTLGLGLGMKQKLKVGKAGITEGIVNGIHERWQRV 193

Query: 2239 EVVKIVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDE 2060
            EVV+IVCED+ + NMKRTHDLLERKTGGLVVWRSG K+ILYRG DYKYPYF+SDKV R++
Sbjct: 194  EVVRIVCEDISKLNMKRTHDLLERKTGGLVVWRSGFKLILYRGADYKYPYFISDKVSRND 253

Query: 2059 NNGDAMQHMD-GDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQL 1883
            N  DA+QH + GDD+N + +ESHSSE NSAT A Q+SNF +AKPALI+GVG+PNKVRFQL
Sbjct: 254  NTDDALQHSENGDDQNSDIRESHSSEFNSATSAEQSSNFNSAKPALIEGVGSPNKVRFQL 313

Query: 1882 PGEAELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLT 1703
            PGEAEL EDAD+LL GLGP+FTDWWGYDPLP+DADLLPAV+PG+RKPFRLLPYGV SKLT
Sbjct: 314  PGEAELAEDADRLLVGLGPRFTDWWGYDPLPIDADLLPAVVPGYRKPFRLLPYGVSSKLT 373

Query: 1702 DDEMTTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMA 1523
            DDEMTT+RRL RPLP HFALGRN K QGLAAAIIKLWERCEI KIA+KRGVQNT+SE MA
Sbjct: 374  DDEMTTMRRLARPLPCHFALGRNRKHQGLAAAIIKLWERCEIAKIAIKRGVQNTNSELMA 433

Query: 1522 EEIKYLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNI--VTNKLKAENSSS---- 1361
            EE+KYLTGGTLL+R+ EFIVFYRGKDFLPAAVSSAIE+RRNI    +KLKA+NSSS    
Sbjct: 434  EELKYLTGGTLLARDREFIVFYRGKDFLPAAVSSAIEKRRNIGIYKDKLKAQNSSSVTVT 493

Query: 1360 ----------------------DAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXX 1247
                                   AV KQR     EAA+K+TS +LS              
Sbjct: 494  PNLEHGTVECDSEGNGMAFQKDTAVPKQRKLAGVEAAIKKTSIRLSEALERKTNAEKLLA 553

Query: 1246 XXXXXXSPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRE 1067
                  S  EQEI KEGITEEERYMLR+IGLKM PFLLLGRRGV+DGTVENMHLHWKYRE
Sbjct: 554  ELNNTESLQEQEIDKEGITEEERYMLRRIGLKMKPFLLLGRRGVYDGTVENMHLHWKYRE 613

Query: 1066 LVKIICKQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTL 887
            LVK++CK GSLE V++IARTLEAESGGILVAVER  +GYAIIVYRGKNY RP++LRPQTL
Sbjct: 614  LVKVLCKPGSLEFVYEIARTLEAESGGILVAVERARRGYAIIVYRGKNYIRPASLRPQTL 673

Query: 886  LNKKQALKRSIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEELRSDMATDR 710
            L+++ A+KRSIEAQR ESLKLHVLKLDKNIN+LK Q+ KD EANSKQI E  + D+A D+
Sbjct: 674  LSRRAAMKRSIEAQRRESLKLHVLKLDKNINQLKLQLDKDKEANSKQIEEVTKLDLAADK 733

Query: 709  HE--ACSDSINCNSPKEASVDNQQAIQEQPVELIDSGGARQS------------------ 590
             +   CS+SIN +SPKEA V+NQQ +QE+ +ELID GG ++                   
Sbjct: 734  DKDGVCSNSINLDSPKEACVENQQPVQEEQLELIDDGGIQEQQLELIDDGGVQEQQLQLT 793

Query: 589  ---------------------EPESSAGLIHKEKQLDEVNDSVVDTGHCVSNNKAMEXXX 473
                                 EPE  A LIHKE QL  V+DSVV+T HCVSNNK +E   
Sbjct: 794  GDGGIQEQQLQLIGDGEDYRHEPEPWASLIHKETQLAGVSDSVVETEHCVSNNKEIEPSV 853

Query: 472  XXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGV 293
                     SAP+I  SSN LPSRS++LSN+ERLLLRKQAL +KKRPVLA+GKSN +TGV
Sbjct: 854  TSSKSDPEPSAPMINRSSNKLPSRSVHLSNKERLLLRKQALMMKKRPVLAVGKSNTVTGV 913

Query: 292  AKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQ 113
            AK INTHF+KHPFAIVNVKGRAKGTSVQEVV +LEQATGAVLVSQEPS +ILYRGWGAG+
Sbjct: 914  AKTINTHFKKHPFAIVNVKGRAKGTSVQEVVLKLEQATGAVLVSQEPSNVILYRGWGAGE 973

Query: 112  EPSTAINDNKVGKNGGEKPSVSPELLQAIRLECGLQ 5
               T  N NKV K  G +P VSPELL+AIR+ECGL+
Sbjct: 974  TSGTERNVNKVRKERGSRPIVSPELLEAIRVECGLK 1009


>OIW12416.1 hypothetical protein TanjilG_04165 [Lupinus angustifolius]
          Length = 986

 Score = 1137 bits (2940), Expect = 0.0
 Identities = 608/913 (66%), Positives = 702/913 (76%), Gaps = 52/913 (5%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVP--GKGFAALSENXXXXXXXXXXXXXXXX 2414
            G+IFVPLPHQLPK RVGHTID SWST +NPVP  G G + L +N                
Sbjct: 80   GKIFVPLPHQLPKYRVGHTIDSSWSTFDNPVPVPGTGISLLRQNELASVAKQQKKKEVEE 139

Query: 2413 XXXXXXXEAPTVAELSLTEAEIMRLRKLGFG--MKKKLKVGKAGITEGIVNGIHERWRSH 2240
                    APT+AEL+L+++EI RL  LG G  MK+KLKVGKAGITEGIVNGIHERW+  
Sbjct: 140  SR------APTLAELNLSKSEIRRLTTLGLGLGMKQKLKVGKAGITEGIVNGIHERWQRV 193

Query: 2239 EVVKIVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDE 2060
            EVV+IVCED+ + NMKRTHDLLERKTGGLVVWRSG K+ILYRG DYKYPYF+SDKV R++
Sbjct: 194  EVVRIVCEDISKLNMKRTHDLLERKTGGLVVWRSGFKLILYRGADYKYPYFISDKVSRND 253

Query: 2059 NNGDAMQHMD-GDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQL 1883
            N  DA+QH + GDD+N + +ESHSSE NSAT A Q+SNF +AKPALI+GVG+PNKVRFQL
Sbjct: 254  NTDDALQHSENGDDQNSDIRESHSSEFNSATSAEQSSNFNSAKPALIEGVGSPNKVRFQL 313

Query: 1882 PGEAELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLT 1703
            PGEAEL EDAD+LL GLGP+FTDWWGYDPLP+DADLLPAV+PG+RKPFRLLPYGV SKLT
Sbjct: 314  PGEAELAEDADRLLVGLGPRFTDWWGYDPLPIDADLLPAVVPGYRKPFRLLPYGVSSKLT 373

Query: 1702 DDEMTTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMA 1523
            DDEMTT+RRL RPLP HFALGRN K QGLAAAIIKLWERCEI KIA+KRGVQNT+SE MA
Sbjct: 374  DDEMTTMRRLARPLPCHFALGRNRKHQGLAAAIIKLWERCEIAKIAIKRGVQNTNSELMA 433

Query: 1522 EEIKYLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRN--IVTNKLKAENSSS---- 1361
            EE+KYLTGGTLL+R+ EFIVFYRGKDFLPAAVSSAIE+RRN  I  +KLKA+NSSS    
Sbjct: 434  EELKYLTGGTLLARDREFIVFYRGKDFLPAAVSSAIEKRRNIGIYKDKLKAQNSSSVTVT 493

Query: 1360 ----------------------DAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXX 1247
                                   AV KQR     EAA+K+TS +LS              
Sbjct: 494  PNLEHGTVECDSEGNGMAFQKDTAVPKQRKLAGVEAAIKKTSIRLSEALERKTNAEKLLA 553

Query: 1246 XXXXXXSPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRE 1067
                  S  EQEI KEGITEEERYMLR+IGLKM PFLLLGRRGV+DGTVENMHLHWKYRE
Sbjct: 554  ELNNTESLQEQEIDKEGITEEERYMLRRIGLKMKPFLLLGRRGVYDGTVENMHLHWKYRE 613

Query: 1066 LVKIICKQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTL 887
            LVK++CK GSLE V++IARTLEAESGGILVAVER  +GYAIIVYRGKNY RP++LRPQTL
Sbjct: 614  LVKVLCKPGSLEFVYEIARTLEAESGGILVAVERARRGYAIIVYRGKNYIRPASLRPQTL 673

Query: 886  LNKKQALKRSIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEELRSDMATDR 710
            L+++ A+KRSIEAQR ESLKLHVLKLDKNIN+LK Q+ KD EANSKQI E  + D+A D+
Sbjct: 674  LSRRAAMKRSIEAQRRESLKLHVLKLDKNINQLKLQLDKDKEANSKQIEEVTKLDLAADK 733

Query: 709  HE--ACSDSINCNSPKEASVDNQQAIQEQPVELIDSGGARQSEPE--------------- 581
             +   CS+SIN +SPKEA V+NQQ +QE+ +ELID GG ++ + E               
Sbjct: 734  DKDGVCSNSINLDSPKEACVENQQPVQEEQLELIDDGGIQEQQLELIDDGGVQEQQLQLT 793

Query: 580  SSAGLIHKEKQL-DEVNDSVVDTGHCVSNNKAMEXXXXXXXXXXXXSAPVIKGSSNGLPS 404
               G+  ++ QL  +V+DSVV+T HCVSNNK +E            SAP+I  SSN LPS
Sbjct: 794  GDGGIQEQQLQLIGDVSDSVVETEHCVSNNKEIEPSVTSSKSDPEPSAPMINRSSNKLPS 853

Query: 403  RSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAK 224
            RS++LSN+ERLLLRKQAL +KKRPVLA+GKSN +TGVAK INTHF+KHPFAIVNVKGRAK
Sbjct: 854  RSVHLSNKERLLLRKQALMMKKRPVLAVGKSNTVTGVAKTINTHFKKHPFAIVNVKGRAK 913

Query: 223  GTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSP 44
            GTSVQEVV +LEQATGAVLVSQEPS +ILYRGWGAG+   T  N NKV K  G +P VSP
Sbjct: 914  GTSVQEVVLKLEQATGAVLVSQEPSNVILYRGWGAGETSGTERNVNKVRKERGSRPIVSP 973

Query: 43   ELLQAIRLECGLQ 5
            ELL+AIR+ECGL+
Sbjct: 974  ELLEAIRVECGLK 986


>XP_015967744.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic [Arachis
            duranensis]
          Length = 984

 Score = 1125 bits (2911), Expect = 0.0
 Identities = 597/888 (67%), Positives = 686/888 (77%), Gaps = 28/888 (3%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LP  RVGHTID SWSTPENPVP  G A L +N                  
Sbjct: 100  GEIFVPLPTRLPIHRVGHTIDPSWSTPENPVPVPGIALLRQNELAKKKENAEEKRRRARE 159

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                  APT+AELSL++AEI RL   G GMK+KLK+GKAGITEGIV GIHERWR  EVV+
Sbjct: 160  EARER-APTLAELSLSDAEIRRLTTAGLGMKQKLKIGKAGITEGIVQGIHERWRRSEVVR 218

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTHDLLERKTGGLVVWRSGSKI+LYRG++YKYPYFLSD+V   +N  D
Sbjct: 219  IVCEDICKLNMKRTHDLLERKTGGLVVWRSGSKILLYRGVNYKYPYFLSDEVFGHKNIDD 278

Query: 2047 AMQHMD-GDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEA 1871
            A+Q  +  DDK+ +E+ SH+S+MN  T+A Q S+ K AKPALI+GVG  NKVRF+LPGE 
Sbjct: 279  ALQLSEHSDDKDFDERHSHASKMNLVTNADQRSDIKAAKPALIKGVGNLNKVRFELPGEV 338

Query: 1870 ELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEM 1691
            EL  DAD+LL GLGP+FTDWWGYDPLPVDADLLPAVIPG+RKPFRLLPYGVKSKLTDDEM
Sbjct: 339  ELAADADQLLIGLGPRFTDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKSKLTDDEM 398

Query: 1690 TTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIK 1511
            TTLRRLG+PLP HFALGRN K QGLAAAIIKLWERCEIVKIA+KRGVQNT+SE MAEEIK
Sbjct: 399  TTLRRLGKPLPCHFALGRNRKHQGLAAAIIKLWERCEIVKIAIKRGVQNTNSEIMAEEIK 458

Query: 1510 YLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTNKLKAENSSS---------- 1361
            +LTGGTLL+R+ EFIV YRGKDFLP+AVSSAI++RRNI  +KLKAE+SSS          
Sbjct: 459  HLTGGTLLARDREFIVLYRGKDFLPSAVSSAIDERRNIELSKLKAESSSSVTVTPGQKHG 518

Query: 1360 ----------------DAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXX 1229
                             A+++Q MFT AEA +KR S KLSM                   
Sbjct: 519  AIECVSEGSGTTSQKGTAIVEQGMFTDAEATIKRNSIKLSMALERKAKAEKLLAELENAE 578

Query: 1228 SPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIIC 1049
             P E+EI KEGITEEERYMLRKIGLKM PFLLLGRRGVFDGTVENMHLHWKYRELVKIIC
Sbjct: 579  CPQEKEIDKEGITEEERYMLRKIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIIC 638

Query: 1048 KQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQA 869
             + S E++HQIA+TLEAESGGIL+AVERVNKGYA+IVYRGKNYSRP++LRP+TLLNKK A
Sbjct: 639  NRQSPEAIHQIAQTLEAESGGILIAVERVNKGYAVIVYRGKNYSRPASLRPKTLLNKKAA 698

Query: 868  LKRSIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEELRSDMATDRHEACSD 692
            LKR +EAQR ESLKLHVLKLDKNI +LK +M KD EANSK  AEE+R DM      + S+
Sbjct: 699  LKRFLEAQRRESLKLHVLKLDKNIKDLKLKMDKDKEANSKHEAEEMRVDMG-----SFSN 753

Query: 691  SINCNSPKEASVDNQQAIQEQPVELIDSGGARQSEPESSAGLIHKEKQLDEVNDSVVDTG 512
            S+N NS KE S++NQ++ Q+Q   +ID  G RQ E ES + LI ++ QLD V+ S VDT 
Sbjct: 754  SVNLNSLKEVSIENQESRQKQ---MIDDDGTRQGEEESMSDLIIEKTQLDGVSVSAVDTR 810

Query: 511  HCVSNNKAMEXXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRP 332
            H +SNN   E            S PVI  SS GLP R +YLSNRERLLLR+QALK+ KRP
Sbjct: 811  HGISNNNPPESYDTSSKCDPEPSVPVINRSSKGLPIRPVYLSNRERLLLRRQALKMTKRP 870

Query: 331  VLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEP 152
            VLAIGKSNI+TGVAKAI THFQKHP AIVN+KGRAKGTSVQEVV +LEQATGAVLVS+EP
Sbjct: 871  VLAIGKSNIVTGVAKAIKTHFQKHPLAIVNIKGRAKGTSVQEVVFKLEQATGAVLVSREP 930

Query: 151  SKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSPELLQAIRLECGL 8
            +K+ILYRGWGAG++P T IND +V +    KP+VSPELL+AI++ECGL
Sbjct: 931  NKVILYRGWGAGEKPRTKINDVEVEEGETSKPTVSPELLEAIKVECGL 978


>XP_016203225.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic [Arachis
            ipaensis]
          Length = 984

 Score = 1124 bits (2906), Expect = 0.0
 Identities = 596/888 (67%), Positives = 685/888 (77%), Gaps = 28/888 (3%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LP  RVGHTID SWSTPENPVP  G A L +N                  
Sbjct: 100  GEIFVPLPTRLPIHRVGHTIDPSWSTPENPVPVPGIALLRQNELAKRKENAEEKRRRARE 159

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                  APT+AELSL++AEI RL   G GMK+KLK+GKAGITEGIV GIHERWR  EVV+
Sbjct: 160  AARER-APTLAELSLSDAEIRRLTTAGLGMKQKLKIGKAGITEGIVQGIHERWRRSEVVR 218

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTHDLLERKTGGLVVWRSGSKI+LYRG+DYKYPYFLSD+V   +N  +
Sbjct: 219  IVCEDICKLNMKRTHDLLERKTGGLVVWRSGSKILLYRGVDYKYPYFLSDEVSGHKNIDN 278

Query: 2047 AMQHMD-GDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEA 1871
             +Q  +  DDK+ +E++SH+S+MN  T+A Q S+ K AKPALI+GVG PNKVRF+LPGE 
Sbjct: 279  VLQLSEHSDDKDFDERQSHASKMNLVTNADQRSDIKAAKPALIKGVGNPNKVRFELPGEV 338

Query: 1870 ELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEM 1691
            E+  DAD+LL GLGP+FTDWWGYDPLPVDADLLPAVIPG+RKPFRLLPYGVKSKLTDDEM
Sbjct: 339  EIAADADQLLIGLGPRFTDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKSKLTDDEM 398

Query: 1690 TTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIK 1511
            TTLRRLG+PLP HFALGRN K QGLAAAIIKLWERCEIVKIA+KRGVQNT+SE MAEEIK
Sbjct: 399  TTLRRLGKPLPCHFALGRNRKHQGLAAAIIKLWERCEIVKIAIKRGVQNTNSEIMAEEIK 458

Query: 1510 YLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTNKLKAENSSSDAV------- 1352
            +LTGGTLL+R+ EFIV YRGKDFLP+AVSSAI++RRNI  +KLKAE+SSSDAV       
Sbjct: 459  HLTGGTLLARDREFIVLYRGKDFLPSAVSSAIDERRNIELSKLKAESSSSDAVTPGKKHG 518

Query: 1351 -------------------IKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXX 1229
                               ++Q MFT AEA +KR S KLSM                   
Sbjct: 519  AIECVSEGSGTTSQKGTAIVEQGMFTDAEATIKRNSIKLSMALERKAKAEKLLAELENAE 578

Query: 1228 SPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIIC 1049
             P E+EI KEGITEEERYMLRKIGLKM PFLLLGRRGVFDGTVENMHLHWKYRELVKIIC
Sbjct: 579  CPQEKEIDKEGITEEERYMLRKIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIIC 638

Query: 1048 KQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQA 869
             + S E +HQIA+TLEAESGGIL+AVERVNKGYA+IVYRGKNYSRP++LRP+TLLNKK A
Sbjct: 639  NKRSPEIIHQIAQTLEAESGGILIAVERVNKGYAVIVYRGKNYSRPASLRPKTLLNKKAA 698

Query: 868  LKRSIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEELRSDMATDRHEACSD 692
            LKR +EAQR ESLKLHVLKLDKNI +LK +M KD EANSK  AE +R DM      + S+
Sbjct: 699  LKRFLEAQRRESLKLHVLKLDKNIKDLKLKMDKDKEANSKHEAEGMRVDMG-----SFSN 753

Query: 691  SINCNSPKEASVDNQQAIQEQPVELIDSGGARQSEPESSAGLIHKEKQLDEVNDSVVDTG 512
            S+N NS KE S++NQ++ Q+Q   +ID  G RQ E ES + LI ++ QLD V+ S VDT 
Sbjct: 754  SVNLNSLKEVSIENQESRQKQ---MIDDDGTRQGEEESMSDLIIEKTQLDGVSVSAVDTR 810

Query: 511  HCVSNNKAMEXXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRP 332
            H +SNN   E            S PV   SS GLP R +YLSNRERLLLR+QALK+ KRP
Sbjct: 811  HGISNNNPPESSDMSSKCDPEPSVPVKNTSSKGLPIRPVYLSNRERLLLRRQALKMTKRP 870

Query: 331  VLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEP 152
            VLAIGKSNI+TGVAKAI THFQKHP AIVN+KGRAKGTSVQEVV +LEQATGAVLVS+EP
Sbjct: 871  VLAIGKSNIVTGVAKAIKTHFQKHPLAIVNIKGRAKGTSVQEVVFKLEQATGAVLVSREP 930

Query: 151  SKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSPELLQAIRLECGL 8
            +K+ILYRGWGAG++P T IND +V +    KP+VSPELL+AI++ECGL
Sbjct: 931  NKVILYRGWGAGEKPRTKINDIEVEEGETSKPTVSPELLEAIKVECGL 978


>XP_003618343.2 group IIA intron splicing facilitator CRS1 [Medicago truncatula]
            AES74561.2 group IIA intron splicing facilitator CRS1
            [Medicago truncatula]
          Length = 1045

 Score = 1099 bits (2843), Expect = 0.0
 Identities = 602/972 (61%), Positives = 689/972 (70%), Gaps = 111/972 (11%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVP--GKGFAALSENXXXXXXXXXXXXXXXX 2414
            GEIF+PLPH LPK RVGHT+D SWSTPENPVP  G G   LSEN                
Sbjct: 80   GEIFLPLPHTLPKYRVGHTLDLSWSTPENPVPLVGAGLEKLSENEVERARLAKEKKREEK 139

Query: 2413 XXXXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEV 2234
                     PT+AELSLT+ EI+RLR+LG+ MK+K+KVGKAG+TEGIVNGIHERWR  EV
Sbjct: 140  RKR-----VPTLAELSLTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEV 194

Query: 2233 VKIVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENN 2054
            V++VCEDLCR NMKRTHD+LERKTGGLVVWRSGSKIILYRGIDYKYPYFLSD+VLR+E +
Sbjct: 195  VRVVCEDLCRINMKRTHDILERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDEVLREEES 254

Query: 2053 GDAMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGE 1874
             DA+Q MD DD++ +E+++HSSEM+SATHAGQ+SN KT KPAL+QGVGTPN+VRFQLPGE
Sbjct: 255  -DALQPMDSDDESIDERKTHSSEMSSATHAGQSSNIKTVKPALVQGVGTPNRVRFQLPGE 313

Query: 1873 AELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDE 1694
            AEL+E+ D LLEGLGP+FTDWWGYDP+PVDADLLPAVIPGFR PFRLLPYGV+SKLTDDE
Sbjct: 314  AELLEEVDSLLEGLGPRFTDWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDE 373

Query: 1693 MTTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEI 1514
            MTTL+RLGR LP HFALGRN KLQG+AAAIIK WERCEIV IAVKRGVQNT +  MAEEI
Sbjct: 374  MTTLKRLGRTLPCHFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRKMAEEI 433

Query: 1513 KYLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTNKLKAENSSS--------- 1361
            KYLTGGTLLSRN E IV YRGKDFLPAAVSSAI++R   V NK  AEN S+         
Sbjct: 434  KYLTGGTLLSRNKEVIVIYRGKDFLPAAVSSAIKKRWKAVKNKENAENRSAITASSHSER 493

Query: 1360 --------DAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPPEQEIV 1205
                       I++ +  KA+AA++RTS KL+                    S  E+EI 
Sbjct: 494  KHMTFIKDKETIEKPLLMKAKAAIQRTSFKLAQALEKKEKAEKLLESLEKDESLQEEEID 553

Query: 1204 KEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQGSLESV 1025
            KE ITEEERYMLR+IGLKM PFLLLGRRGVFDGTVENMHLHWKYRELVKIIC Q S+E  
Sbjct: 554  KESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVEYA 613

Query: 1024 HQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKRSIEAQ 845
            HQ ARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRP +LRP+TLLNKKQALKRSIEAQ
Sbjct: 614  HQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPDSLRPRTLLNKKQALKRSIEAQ 673

Query: 844  RCESLKLHVLKLDKNINELKRQMVKDEANSKQIAEELRSDMATDR--HEACSDS------ 689
            R E+LKLHVLKLDKNINELK QMVKDEA+S+QIA+ELRSD+AT+    EA  D+      
Sbjct: 674  RREALKLHVLKLDKNINELKHQMVKDEASSEQIAKELRSDLATENSPEEASVDNQQPIQE 733

Query: 688  ----------------------------INCNSPKEASVDNQQAIQEQPVELIDSGGARQ 593
                                           NS +EASVDNQQ IQEQ +ELID+G   Q
Sbjct: 734  QHIELIGSGGECQGEPESLTGLVHQERQATKNSLEEASVDNQQPIQEQHIELIDTGEECQ 793

Query: 592  SEPESSAGLIHKEKQLDEVNDSVVDTGHCVSNNKAMEXXXXXXXXXXXXSAPVIKGSSNG 413
             EPES  GL+H+E+QLDEV+D VVDTGH VS NKA E            SAPVI  +SN 
Sbjct: 794  GEPESLTGLVHQERQLDEVDDFVVDTGHSVSTNKASEGSIISFKSDPEPSAPVINENSNE 853

Query: 412  LPSRSLY-------------------------------------------------LSNR 380
             PS  ++                                                  S+R
Sbjct: 854  FPSSLVHPKRQLDEVSDSVVDTGHSVSTNDAMEASIISFKRDPEPSAPVINKSPIEFSSR 913

Query: 379  ERLLLRKQAL-------KIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAKG 221
               L  ++ L       ++KK P++ IGKSNI+ G+ +AI    ++HPF IVNVKGRAKG
Sbjct: 914  SSSLSNRERLLLRKQALRMKKIPIVPIGKSNIVAGLEEAIKNLLRRHPFVIVNVKGRAKG 973

Query: 220  TSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSPE 41
            TSV E+VS LE+ATGAVLVSQEPSKIILYRGWGAG +  T      V ++GG KP+VSPE
Sbjct: 974  TSVHELVSILEEATGAVLVSQEPSKIILYRGWGAGTQRHTNSIYRGVAEDGGAKPNVSPE 1033

Query: 40   LLQAIRLECGLQ 5
            LL+AIR+ECGLQ
Sbjct: 1034 LLEAIRIECGLQ 1045


>XP_007151135.1 hypothetical protein PHAVU_004G020800g [Phaseolus vulgaris]
            XP_007151136.1 hypothetical protein PHAVU_004G020800g
            [Phaseolus vulgaris] ESW23129.1 hypothetical protein
            PHAVU_004G020800g [Phaseolus vulgaris] ESW23130.1
            hypothetical protein PHAVU_004G020800g [Phaseolus
            vulgaris]
          Length = 960

 Score = 1073 bits (2776), Expect = 0.0
 Identities = 582/915 (63%), Positives = 666/915 (72%), Gaps = 54/915 (5%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP  LPK+ VGHTIDQSW   E  VP                            
Sbjct: 82   GEIFVPLPQHLPKRHVGHTIDQSWDKREERVP---------------------------- 113

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                    T+AELSL+ AEI RL  +G  +++KL+VGKAGITEGIVNGIHERWR+ EVV+
Sbjct: 114  --------TLAELSLSNAEIKRLTTVGLRLRQKLRVGKAGITEGIVNGIHERWRNSEVVR 165

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            I C+DL R NMKRTHDLLERKTGGLVVWRSGSKIILYRG DYKYPYFLSDKVLRD+++GD
Sbjct: 166  IACDDLSRFNMKRTHDLLERKTGGLVVWRSGSKIILYRGPDYKYPYFLSDKVLRDDHSGD 225

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
             +QHMD DDK+ +++ESH SE NS T+ GQ+ N KT+KPALIQG+GTP KVRFQLPGEAE
Sbjct: 226  VLQHMDEDDKSRDKRESHLSEKNSVTYTGQSLNAKTSKPALIQGIGTPKKVRFQLPGEAE 285

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            L +DAD LL G+GP+F DWWGYDPLPVDADLLPAVIPG+RKPFRLLPYGVK KLTDDEMT
Sbjct: 286  LAKDADNLLTGIGPRFFDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLTDDEMT 345

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            T+RRLG  LP HFALGRN KLQGLA AIIKLWERCEIVKIA+KRGV+NTD E MAEEIKY
Sbjct: 346  TMRRLGNHLPCHFALGRNRKLQGLAVAIIKLWERCEIVKIAIKRGVENTDGEVMAEEIKY 405

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTNKLKAENSSS----------- 1361
            LTGGTLL+R+ EFIVFYRGKDFLPAAVSSAIEQRR+I  NKLK  NS S           
Sbjct: 406  LTGGTLLARDKEFIVFYRGKDFLPAAVSSAIEQRRSIGMNKLKTGNSRSVTDARDLNDGT 465

Query: 1360 ---DAVIKQRMF---------TKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPPE 1217
               D+V+K   F         T+AE A+K TS KLSM                    P E
Sbjct: 466  RECDSVVKGMNFQKDTKPGILTEAEKAIKSTSIKLSMALEERTKAEKLLAEMENAEKPQE 525

Query: 1216 QEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG- 1040
            +EI +EGITEEE+YMLR+IGLKM PFLLLGRRGVFDGTV+NMHLHWKYRELVKIIC +  
Sbjct: 526  EEINREGITEEEKYMLRRIGLKMGPFLLLGRRGVFDGTVQNMHLHWKYRELVKIICNKQT 585

Query: 1039 -SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALK 863
             SLE V QIA+TLEAESGGIL++VE+V KG+AIIVYRGKNYSRP++LRP+TLLNK++ALK
Sbjct: 586  LSLEDVQQIAKTLEAESGGILISVEKVGKGHAIIVYRGKNYSRPASLRPRTLLNKREALK 645

Query: 862  RSIEAQRCESLKLHVLKLDKNINELKRQMVK-----DEANSKQ------IAEELRSDMAT 716
            RS EAQR ESLKLHVLKL  NIN LK QM +     D+  + Q      I      + + 
Sbjct: 646  RSKEAQRHESLKLHVLKLGSNINRLKLQMEQSVELVDDGGAHQSEADNFINWNPNKETSV 705

Query: 715  DRHEACS------------------DSINCNSPKEASVDNQQAIQEQPVELIDSGGARQS 590
            D  EA                     S N NSP+ A VDNQQAIQ+ PVE ID  GA Q 
Sbjct: 706  DNPEAMQGQTVEPIDSGEAHPGEPESSANWNSPEGAFVDNQQAIQDHPVEQIDGRGAHQD 765

Query: 589  EPESSAGLIHKEKQLDEVNDSVVDTGHCVSNNKAMEXXXXXXXXXXXXSAPVIKGSSNGL 410
            EPES  GLI K+++ D V+DS+VDT H VS ++ ME            S  V   SSN L
Sbjct: 766  EPESWPGLIPKDREFDGVSDSLVDTEHSVSISEVMESSIMSSKSHADLSTLVRDMSSNEL 825

Query: 409  PSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGR 230
            PS S+ LSNRERLLLRKQAL +KKR VL++GKSN +TG+AKAIN HF+K+P A+VNVKGR
Sbjct: 826  PSGSVCLSNRERLLLRKQALTMKKRSVLSVGKSNSVTGIAKAINAHFRKYPLAVVNVKGR 885

Query: 229  AKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSV 50
            A GTS+QEVVS+LEQ TGAVLVSQE  K+ILYRGWG G++PSTAIN  K+ K G  KPSV
Sbjct: 886  ANGTSIQEVVSKLEQETGAVLVSQELHKVILYRGWGEGEKPSTAINVKKLDKKGEAKPSV 945

Query: 49   SPELLQAIRLECGLQ 5
            SPELL+AIR+ECGLQ
Sbjct: 946  SPELLEAIRIECGLQ 960


>XP_003554854.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Glycine max] KRG93410.1 hypothetical
            protein GLYMA_19G014100 [Glycine max]
          Length = 1028

 Score = 1061 bits (2744), Expect = 0.0
 Identities = 589/921 (63%), Positives = 666/921 (72%), Gaps = 66/921 (7%)
 Frame = -1

Query: 2584 EIFVPLPHQLPKQRVGHTIDQSWSTPENPVP--GKGFAALSENXXXXXXXXXXXXXXXXX 2411
            EI VP PH+LPK+RVGHT + SWSTP NPVP  G G AALS++                 
Sbjct: 78   EIHVPFPHELPKRRVGHTFEPSWSTPLNPVPVPGSGIAALSKSEVRRQKKLRAEESRRRK 137

Query: 2410 XXXXXXEAPTVAELSLTEAEIMRLRKLGFGM-KKKLKVGKAGITEGIVNGIHERWRSHEV 2234
                    PT+AELSL ++EI RL  LGF   KKK+++ KAGITE IV+ IHERW+  EV
Sbjct: 138  EL-----VPTLAELSLPDSEIRRLTTLGFSTTKKKVRLAKAGITEQIVDVIHERWKRSEV 192

Query: 2233 VKIVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDEN- 2057
            V++ CE+L R +M+RTHDLLERKTGGLVVWRSG+KIILYRG DYKYPYFLSDKV R +N 
Sbjct: 193  VRVFCEELSRDDMRRTHDLLERKTGGLVVWRSGTKIILYRGADYKYPYFLSDKVTRQDNT 252

Query: 2056 NGDAMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPG 1877
            + DA+QH++ DDK C++ ESH SE NS   A +NSN +TAKPALI GVGTPNKVRFQLP 
Sbjct: 253  SNDALQHVNADDKYCDKSESHLSEKNSVACAVENSNAETAKPALILGVGTPNKVRFQLPD 312

Query: 1876 EAELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDD 1697
            EAEL ED D LL GLGP+FTDWWG DPLPVDADLLPAVI G+RKPFRLLPYGV  KLTDD
Sbjct: 313  EAELAEDTDCLLTGLGPRFTDWWGGDPLPVDADLLPAVIHGYRKPFRLLPYGVNPKLTDD 372

Query: 1696 EMTTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEE 1517
            EMTTL+RLG+PLP HFALGRN KLQGLAAAIIKLWERCEIVKIAVKRGVQNT S+ MA+E
Sbjct: 373  EMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKIMAKE 432

Query: 1516 IKYLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTNKLKAENSSSDAVI---- 1349
            +K+LTGG LLSR+ EF VFYRGKD+LPAAVSSAI+++RNI   KLK  NS S  V     
Sbjct: 433  LKHLTGGILLSRDREFFVFYRGKDYLPAAVSSAIKKQRNIGMYKLKFGNSLSATVTPNPK 492

Query: 1348 -------------------KQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXS 1226
                               KQRM TKAE A+KRTS KLSM                   S
Sbjct: 493  DGTIECNSEVKGMNFQKDTKQRMLTKAEEAIKRTSIKLSMALEKKAKAEKLLEKLINAES 552

Query: 1225 PPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICK 1046
            P EQEI KEGI++EE+YMLR+IGL M PFLLLGRRGVFDGTVENMHLHWKYRELVKIIC 
Sbjct: 553  PQEQEIDKEGISKEEKYMLRRIGLMMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICN 612

Query: 1045 QGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQAL 866
             GSLE VHQIA TLEAESGGILVAVERV KG+AIIVYRGKNYS P  LRPQTLLNK+QAL
Sbjct: 613  -GSLEEVHQIALTLEAESGGILVAVERVRKGFAIIVYRGKNYSVPVCLRPQTLLNKRQAL 671

Query: 865  KRSIEAQRCESLKLHVLKLDKNINELKRQMVKDE-ANSKQIAEELRSDMATDRHEACSDS 689
            KRSIEAQR ESLKL +L LDK INELK Q+V+DE ANSKQ+AE  R DMATD HEACS+ 
Sbjct: 672  KRSIEAQRRESLKLRILTLDKEINELKLQIVEDEEANSKQMAEASRLDMATDEHEACSNF 731

Query: 688  INCNSPKEASVDNQQAIQEQPVELIDSGGARQSEPESSAG-------------------- 569
            IN +SPKEAS DNQQAIQE+PVELIDSGGA Q EPE+S                      
Sbjct: 732  INWHSPKEASGDNQQAIQEEPVELIDSGGAHQGEPENSISWNSSIEASIDNQQAIQEHPV 791

Query: 568  ------------------LIHKEKQLDEVNDSVVDTGHCVSNNKAMEXXXXXXXXXXXXS 443
                              LIHKE Q DEV+DSV DT   +SN K ME             
Sbjct: 792  ELIDGGATHQDEPESWPSLIHKETQSDEVSDSVTDTELHISNRKGMESSNSLSKNDREPL 851

Query: 442  APVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQK 263
            APVI  S   LPSRS++LS +ERLLLRKQALKIK+ PVLAIGKSNI++GV + I  HF+K
Sbjct: 852  APVIYMS---LPSRSVHLSTKERLLLRKQALKIKQ-PVLAIGKSNIVSGVVQTIKAHFEK 907

Query: 262  HPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNK 83
            HP A+VNVKGRAKGTSVQE+V +LEQ TGA+LVS+EPS IILYRGW + +    A++ NK
Sbjct: 908  HPLAVVNVKGRAKGTSVQELVFKLEQETGALLVSREPSNIILYRGWPSERRSRPAMHVNK 967

Query: 82   VGKNGGEKPSVSPELLQAIRL 20
            V    G +PSVSP     IR+
Sbjct: 968  VRNEEGTEPSVSPAYAHRIRI 988


>KJB33714.1 hypothetical protein B456_006G027700 [Gossypium raimondii]
          Length = 998

 Score =  962 bits (2486), Expect = 0.0
 Identities = 521/904 (57%), Positives = 630/904 (69%), Gaps = 43/904 (4%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 89   GEIFVPLPEKLPKYRVGHTIDSSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 146

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 147  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 206

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 207  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 266

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+K  +E ES SSE N    +   +  K  K ALIQGVG+P++VRFQLPGEAE
Sbjct: 267  ASSDTNVDNKELDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAE 326

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 327  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 386

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 387  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 446

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K+ 
Sbjct: 447  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIA 506

Query: 1378 AENS-------SSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN         SD    ++    AEA +KRTS+KLSM                    P 
Sbjct: 507  SENDINSAKDRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQ 566

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 567  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 626

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 627  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 686

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMV-----KDEANSKQIAEELRSDM----ATDRH 707
            S+E QR +SLKLH+LKL +NI+ELK Q+V     K+E  + Q  +  RSD+    + + H
Sbjct: 687  SLEEQRRKSLKLHILKLTRNIDELKHQLVVDKEAKEEMETLQSVKCARSDIEYHASPEGH 746

Query: 706  EACSDSINCNSPKEASVDNQQAIQE-------QPVELIDSGGARQSEPESSAGLIHKEKQ 548
                D     S K   +    +I E       +P  + D     ++EPE S+  +++ K 
Sbjct: 747  LEAKDKSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKTEPEFSSESVNRRKH 806

Query: 547  LDEVN--DSVVDTGHCVSNNKAME-XXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRE 377
              E+    S  +      NN  ME              +P     SN + S + +LSN+E
Sbjct: 807  NTELRALHSQFEMEENAYNNGPMESMVESASKNLDVLISPAADNVSNKMASTAKFLSNKE 866

Query: 376  RLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVS 197
            RLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTHF+KHP AIVNVKGRAKGTSVQEVV 
Sbjct: 867  RLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTHFKKHPLAIVNVKGRAKGTSVQEVVL 926

Query: 196  ELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSPELLQAIRLE 17
            +L++ATGAVLVSQEPSK+ILYRGWGA  EP+     N        +P+VSPEL+ AI+ E
Sbjct: 927  KLQEATGAVLVSQEPSKVILYRGWGANDEPARGDKRNVKDSPVQNQPAVSPELIAAIKFE 986

Query: 16   CGLQ 5
            CGLQ
Sbjct: 987  CGLQ 990


>EOY02282.1 CRM family member 2, putative isoform 2 [Theobroma cacao]
          Length = 1045

 Score =  961 bits (2484), Expect = 0.0
 Identities = 523/946 (55%), Positives = 642/946 (67%), Gaps = 85/946 (8%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP ++PK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 94   GEIFVPLPEKIPKYRVGHTIDTSWSTPENPVPDPGSGPGS--LMARFREMKRERRKVGRV 151

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLK+GKAGITEGIVNGIHERWR  EVVK
Sbjct: 152  KEEDRAVPSLAELKLSAAELRRLRTVGIGEKRKLKLGKAGITEGIVNGIHERWRRSEVVK 211

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLVVWRSGSKIILYRG +Y+YPYFL+DK+  D+ + +
Sbjct: 212  IVCEDICKMNMKRTHEVLERKTGGLVVWRSGSKIILYRGANYRYPYFLADKIATDDTSSN 271

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+   +E ES SSE+NSA  A  N+  K  KP ++QGVG+P++VRFQLPGEAE
Sbjct: 272  ASPDTNMDNVELHETESCSSEINSAKTAIPNATNKMTKPMIVQGVGSPSRVRFQLPGEAE 331

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LVE+A+ LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVK  LT+DEMT
Sbjct: 332  LVEEANHLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKPILTNDEMT 391

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HF LGRN KLQGLAA+I+K WE+CEI K+AVKRGVQNT+SE MAEE+K+
Sbjct: 392  TLRRLGRPLPCHFVLGRNRKLQGLAASIVKHWEKCEIAKVAVKRGVQNTNSELMAEELKW 451

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN--KLKAENSSSDAVIKQ--- 1343
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +  K  AE S S    ++   
Sbjct: 452  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRRHVIHVEKQGAECSKSKKTAQEVIV 511

Query: 1342 -------------------------RMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXX 1238
                                     +    AEAA+++T  KLSM                
Sbjct: 512  EDTKSGSESKINSAKDQRSNFFGDPKNMKSAEAAIRKTDVKLSMALEKKAKAEKLLAELE 571

Query: 1237 XXXSPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVK 1058
                P + EI KEGIT+EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVK
Sbjct: 572  QAEIPQQSEIDKEGITQEERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVK 631

Query: 1057 IICKQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNK 878
            II K+ ++E+VHQ+AR LEAESGGILVAVERV+KGYAIIVYRGKNY RP++LRPQTLL K
Sbjct: 632  IISKETNVEAVHQLARMLEAESGGILVAVERVSKGYAIIVYRGKNYERPTSLRPQTLLTK 691

Query: 877  KQALKRSIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEELRSDMATDRHEA 701
            +QA+KRS+E QR +SLKLH+L L +N+N+L+ Q+V D EANS Q  E+    +  +  E 
Sbjct: 692  RQAMKRSLEEQRRKSLKLHILNLTRNVNDLEHQLVVDKEANSMQTVEQSSLPLVQEELET 751

Query: 700  CSDS------INCNSPKEASVDN-----------------------QQAIQE--QPVELI 614
                      I C +     V++                       Q + QE  +P  + 
Sbjct: 752  LQSVEYTGSVIECPASSGGHVESRDKDGSESTSMKNDKMVATISIRQPSKQEFMEPSSIH 811

Query: 613  DSGGARQSEPESSAGLIHKEKQ----------------------LDEVNDS-VVDTGHCV 503
            D     ++E E SA  ++++                        ++E++DS  ++  H V
Sbjct: 812  DGFENHKTESEFSAESVNRKSHATELRALHTQVEMVDTSYPDNLMEEIDDSGAINAEHGV 871

Query: 502  SNNKAMEXXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVLA 323
            SNN  ME             +  ++  SN + S + +LSN++RLLLRKQALK+KKRPVLA
Sbjct: 872  SNNGPMESLVESASMLDVSISSAVENVSNKMASTANFLSNKDRLLLRKQALKMKKRPVLA 931

Query: 322  IGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKI 143
            +G+SNI+TGVAKAI  HFQKHP AIVNVKGRAKGTSVQEVV +L++ATGAVLVSQEPSK+
Sbjct: 932  VGRSNIVTGVAKAIRAHFQKHPLAIVNVKGRAKGTSVQEVVLKLQEATGAVLVSQEPSKV 991

Query: 142  ILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSPELLQAIRLECGLQ 5
            ILYRGWGAG E     N N        +P+VSPEL+ AIRLECGLQ
Sbjct: 992  ILYRGWGAGDELGRGDNRNAKDSLAQNRPAVSPELIAAIRLECGLQ 1037


>XP_012483760.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Gossypium raimondii] KJB33715.1
            hypothetical protein B456_006G027700 [Gossypium
            raimondii]
          Length = 1012

 Score =  957 bits (2475), Expect = 0.0
 Identities = 523/918 (56%), Positives = 632/918 (68%), Gaps = 57/918 (6%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 89   GEIFVPLPEKLPKYRVGHTIDSSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 146

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 147  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 206

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 207  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 266

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+K  +E ES SSE N    +   +  K  K ALIQGVG+P++VRFQLPGEAE
Sbjct: 267  ASSDTNVDNKELDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAE 326

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 327  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 386

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 387  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 446

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K+ 
Sbjct: 447  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIA 506

Query: 1378 AENS-------SSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN         SD    ++    AEA +KRTS+KLSM                    P 
Sbjct: 507  SENDINSAKDRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQ 566

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 567  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 626

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 627  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 686

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMVKDEANSKQIA----------EEL-------- 734
            S+E QR +SLKLH+LKL +NI+ELK Q+V D+  S  +A          EE+        
Sbjct: 687  SLEEQRRKSLKLHILKLTRNIDELKHQLVVDKEASNTLAADQSRLPSVEEEMETLQSVKC 746

Query: 733  -RSDM----ATDRHEACSDSINCNSPKEASVDNQQAIQE-------QPVELIDSGGARQS 590
             RSD+    + + H    D     S K   +    +I E       +P  + D     ++
Sbjct: 747  ARSDIEYHASPEGHLEAKDKSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKT 806

Query: 589  EPESSAGLIHKEKQLDEVN--DSVVDTGHCVSNNKAME-XXXXXXXXXXXXSAPVIKGSS 419
            EPE S+  +++ K   E+    S  +      NN  ME              +P     S
Sbjct: 807  EPEFSSESVNRRKHNTELRALHSQFEMEENAYNNGPMESMVESASKNLDVLISPAADNVS 866

Query: 418  NGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNV 239
            N + S + +LSN+ERLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTHF+KHP AIVNV
Sbjct: 867  NKMASTAKFLSNKERLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTHFKKHPLAIVNV 926

Query: 238  KGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEK 59
            KGRAKGTSVQEVV +L++ATGAVLVSQEPSK+ILYRGWGA  EP+     N        +
Sbjct: 927  KGRAKGTSVQEVVLKLQEATGAVLVSQEPSKVILYRGWGANDEPARGDKRNVKDSPVQNQ 986

Query: 58   PSVSPELLQAIRLECGLQ 5
            P+VSPEL+ AI+ ECGLQ
Sbjct: 987  PAVSPELIAAIKFECGLQ 1004


>XP_012483761.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Gossypium raimondii]
          Length = 1009

 Score =  957 bits (2474), Expect = 0.0
 Identities = 522/915 (57%), Positives = 631/915 (68%), Gaps = 54/915 (5%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 89   GEIFVPLPEKLPKYRVGHTIDSSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 146

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 147  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 206

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 207  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 266

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+K  +E ES SSE N    +   +  K  K ALIQGVG+P++VRFQLPGEAE
Sbjct: 267  ASSDTNVDNKELDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAE 326

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 327  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 386

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 387  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 446

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K+ 
Sbjct: 447  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIA 506

Query: 1378 AENS-------SSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN         SD    ++    AEA +KRTS+KLSM                    P 
Sbjct: 507  SENDINSAKDRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQ 566

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 567  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 626

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 627  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 686

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMVKD-----EANSKQIAEELRSDM----ATDRH 707
            S+E QR +SLKLH+LKL +NI+ELK Q+V D     E  + Q  +  RSD+    + + H
Sbjct: 687  SLEEQRRKSLKLHILKLTRNIDELKHQLVVDKEVEEEMETLQSVKCARSDIEYHASPEGH 746

Query: 706  EACSDSINCNSPKEASVDNQQAIQE-------QPVELIDSGGARQSEPESSAGLIHKEKQ 548
                D     S K   +    +I E       +P  + D     ++EPE S+  +++ K 
Sbjct: 747  LEAKDKSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKTEPEFSSESVNRRKH 806

Query: 547  LDEVN------DSVVDTGH-------CVSNNKAME-XXXXXXXXXXXXSAPVIKGSSNGL 410
              E+       + V  + H          NN  ME              +P     SN +
Sbjct: 807  NTELRALHSQFEMVESSSHHDNLMEENAYNNGPMESMVESASKNLDVLISPAADNVSNKM 866

Query: 409  PSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGR 230
             S + +LSN+ERLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTHF+KHP AIVNVKGR
Sbjct: 867  ASTAKFLSNKERLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTHFKKHPLAIVNVKGR 926

Query: 229  AKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSV 50
            AKGTSVQEVV +L++ATGAVLVSQEPSK+ILYRGWGA  EP+     N        +P+V
Sbjct: 927  AKGTSVQEVVLKLQEATGAVLVSQEPSKVILYRGWGANDEPARGDKRNVKDSPVQNQPAV 986

Query: 49   SPELLQAIRLECGLQ 5
            SPEL+ AI+ ECGLQ
Sbjct: 987  SPELIAAIKFECGLQ 1001


>XP_018823102.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic isoform
            X1 [Juglans regia]
          Length = 1052

 Score =  956 bits (2471), Expect = 0.0
 Identities = 532/943 (56%), Positives = 637/943 (67%), Gaps = 82/943 (8%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVP--GKGFAALSENXXXXXXXXXXXXXXXX 2414
            GEIF+PLP+++PK+RVG+TID+SWSTPENPVP  G G A    +                
Sbjct: 102  GEIFIPLPNRVPKRRVGYTIDRSWSTPENPVPEPGTGSAIARYHEVRREVFKQKALERKD 161

Query: 2413 XXXXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEV 2234
                    APT+AEL+L E E+ RLRK+G   +KKLK+GKAGITEGIVNGIHERWR  EV
Sbjct: 162  KKEKREERAPTLAELTLNENELRRLRKIGIETRKKLKIGKAGITEGIVNGIHERWRHFEV 221

Query: 2233 VKIVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENN 2054
            VKIVCEDLCR NMKRTHDLLER TGGLVVWRSGSKI+LYRG +YKYPYFLSD++L++E +
Sbjct: 222  VKIVCEDLCRKNMKRTHDLLERTTGGLVVWRSGSKIVLYRGANYKYPYFLSDEILKNETS 281

Query: 2053 GDAMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGE 1874
             DA+   + DD   ++ ES    ++    +  +   K ++P LIQGVG PN+VRFQLPGE
Sbjct: 282  TDALPDPNMDDGGSDKMESCLPSIDGVESSITSPTKKISQPKLIQGVGRPNRVRFQLPGE 341

Query: 1873 AELVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDE 1694
            A+L E AD+LLEGLGP+FTDWWGYDPLPVDADLLPAV+PG+R+PFRLLPYGVK  LT+DE
Sbjct: 342  AQLAEVADRLLEGLGPRFTDWWGYDPLPVDADLLPAVVPGYRRPFRLLPYGVKPILTNDE 401

Query: 1693 MTTLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEI 1514
            MTTL+RLGRP+  HFA+GRN  LQGLAA+I+KLWE+CEI KIAVKRGVQNT+SE MA E+
Sbjct: 402  MTTLKRLGRPMACHFAVGRNRNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAAEL 461

Query: 1513 KYLTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTNKLKAENSSSDAVI----- 1349
            K LTGG LLSR++EF V YRGKDFLP +V SAIE+RR  V +  K   + S +V      
Sbjct: 462  KRLTGGVLLSRDSEFFVLYRGKDFLPLSVCSAIEERRKHVIHGEKERANCSTSVTTAQEL 521

Query: 1348 -------------------------KQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXX 1244
                                     +QRM    EA +KRTS KLSM              
Sbjct: 522  KLGNAEGGSESELDGANYEERGGISEQRMLRSTEAVIKRTSIKLSMALEKKAKAEKLLAE 581

Query: 1243 XXXXXSPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYREL 1064
                  P   EI KEGITEEER MLRK+GL+M PFLL+GRRG+FDGTVENMHLHWKYREL
Sbjct: 582  LEEAEIPQAPEIDKEGITEEERNMLRKVGLRMKPFLLMGRRGIFDGTVENMHLHWKYREL 641

Query: 1063 VKIICKQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLL 884
            VK+I K+ S+E+VHQ ARTLE+ESGGILVAVERVNKGYAIIVYRGKNY RP++LRPQTLL
Sbjct: 642  VKVISKEKSIEAVHQEARTLESESGGILVAVERVNKGYAIIVYRGKNYKRPASLRPQTLL 701

Query: 883  NKKQALKRSIEAQRCESLKLHVLKLDKNINELKRQMVKDEANSKQIAEELRSDM------ 722
            NK++A+KRS+EAQR +SLKLHVLKL++NI++LK Q+VK++ NS Q  E  RS        
Sbjct: 702  NKREAMKRSLEAQRRKSLKLHVLKLNRNIDDLKLQLVKEDMNSVQPTECSRSHAEVKYGH 761

Query: 721  ---------------ATDRHEACSDSINCNSPKEASVDN--QQAIQEQPVELI-----DS 608
                           A D+H A S S+N N   +A ++N  Q   Q++ + L      D 
Sbjct: 762  LSRPLISACHEENAEAKDKHGAHSASMNFNEGVDAPINNILQSTQQDEVIGLSAMYEGDP 821

Query: 607  GGARQSEPESSAGL-IHKEKQLDE-------VNDSVVD------------TGHCVSNNKA 488
             G  + E   S G   H    +D+       V+ S  D               C  NNKA
Sbjct: 822  AGRVEIESSESVGKETHANVFMDKNGEVGAAVSTSFPDNFMSEGKRHSAVVEDCAFNNKA 881

Query: 487  MEXXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSN 308
             E                I+  S  +P R+L LSN+ERLLLRKQALK+KKRPVLA+G+SN
Sbjct: 882  KELSDKSVKTDSKPDQITIENGSK-MPRRALQLSNKERLLLRKQALKMKKRPVLAVGRSN 940

Query: 307  IMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRG 128
            I+TGVAK I  HF+KHP AIVNVKGRAKGTSVQEVV  LEQATGAVLVSQEPSK+ILYRG
Sbjct: 941  IVTGVAKTIMAHFKKHPLAIVNVKGRAKGTSVQEVVFLLEQATGAVLVSQEPSKVILYRG 1000

Query: 127  WGAGQEPSTAINDNK--VGKNGGEKPSVSPELLQAIRLECGLQ 5
            WGA  +       N    G+ G  + +VSPELL AIRLECGLQ
Sbjct: 1001 WGAEDKHGHIEKKNAGVAGEEGATQLTVSPELLAAIRLECGLQ 1043


>XP_017975690.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic isoform
            X2 [Theobroma cacao]
          Length = 1050

 Score =  954 bits (2466), Expect = 0.0
 Identities = 521/946 (55%), Positives = 645/946 (68%), Gaps = 85/946 (8%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFV LP ++PK RVGHT+D SWSTPENPVP  G    S                    
Sbjct: 94   GEIFVSLPEKIPKYRVGHTVDTSWSTPENPVPDPGSGPGS--LMARFREMKRERRKVGRV 151

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLK+GKAGITEGIVNGIHERWR  EVVK
Sbjct: 152  KEEDRAVPSLAELKLSAAELRRLRTVGIGEKRKLKLGKAGITEGIVNGIHERWRRSEVVK 211

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLVVWRSGSKIILYRG +Y+YPYFL+DK+  D+ + +
Sbjct: 212  IVCEDICKMNMKRTHEVLERKTGGLVVWRSGSKIILYRGANYRYPYFLADKIATDDTSSN 271

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+   +E ES SSE+NSA  A  N+  K  KP ++QGVG+P++VRFQLPGEAE
Sbjct: 272  ASPDTNMDNVELHETESCSSEINSAKTAIPNATNKMTKPMIVQGVGSPSRVRFQLPGEAE 331

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LVE+A++LL+ LGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVK  LT+DEMT
Sbjct: 332  LVEEANRLLDELGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKPILTNDEMT 391

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HF LGRN KLQGLAA+I+KLWE+CEI K+AVKRGVQNT+SE MAEE+K+
Sbjct: 392  TLRRLGRPLPCHFVLGRNRKLQGLAASIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKW 451

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN--KLKAENSSSDAVIKQ--- 1343
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +  K  AE S S    ++   
Sbjct: 452  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRRHVIHVEKQGAECSKSKKTAQEVIV 511

Query: 1342 -------------------------RMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXX 1238
                                     +    AEAA+++T  KLSM                
Sbjct: 512  EDTKSGSESKINSAKDQRSNFFGDPKNMKSAEAAIRKTDVKLSMALEKKAKAEKLLAELE 571

Query: 1237 XXXSPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVK 1058
                P + EI KEGIT+EERYMLRK+GL+M  FLLLGRRGVFDGTVENMHLHWKYRELVK
Sbjct: 572  QAEIPQQSEIDKEGITQEERYMLRKVGLRMKSFLLLGRRGVFDGTVENMHLHWKYRELVK 631

Query: 1057 IICKQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNK 878
            II K+ ++E+VHQ+AR LEAESGGILVAVERV+KGYAIIVYRGKNY RP++LRPQTLL K
Sbjct: 632  IISKETNVEAVHQLARMLEAESGGILVAVERVSKGYAIIVYRGKNYERPTSLRPQTLLTK 691

Query: 877  KQALKRSIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEE-----LRSDMAT 716
            +QA+KRS+E QR +SLKLH+L L +N+N+L+ Q+V D EANS Q  E+     ++ +M T
Sbjct: 692  RQAMKRSLEEQRRKSLKLHILNLTRNVNDLEHQLVVDKEANSMQTVEQSSLPLVQEEMET 751

Query: 715  DRH-EACSDSINCNSPKEASVDN-----------------------QQAIQE--QPVELI 614
             +  E     I C +     V++                       Q + QE  +P  + 
Sbjct: 752  LQSVEYTGSVIECPASSGGHVESRDKDGSESTSMKNDKMVAAISIRQPSKQEFMEPSSIH 811

Query: 613  DSGGARQSEPESSAGLIHKEKQ----------------------LDEVNDS-VVDTGHCV 503
            D     ++E E SA  ++++                        ++E++DS  ++  H V
Sbjct: 812  DGFENHKTESEFSAESVNRKSHATELRALHTQVEMVDTSYPDNLMEEIDDSGAINAEHGV 871

Query: 502  SNNKAMEXXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVLA 323
            SNN  ME             +  ++  S+ + S + +LSN++RLLLRKQALK+KKRPVLA
Sbjct: 872  SNNGPMESLVESASMLDVSISSAVENVSDKMASTANFLSNKDRLLLRKQALKMKKRPVLA 931

Query: 322  IGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKI 143
            +G+SNI+TGVAKAI  HFQKHP AIVNVKGRAKGTSVQEVV +L++ATGAVLVSQEPSK+
Sbjct: 932  VGRSNIVTGVAKAIRAHFQKHPLAIVNVKGRAKGTSVQEVVLKLQEATGAVLVSQEPSKV 991

Query: 142  ILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSPELLQAIRLECGLQ 5
            ILYRGWGAG E     N N        +P+VSPEL+ AIRLECGLQ
Sbjct: 992  ILYRGWGAGDELGRGDNRNAKDSLAQNRPAVSPELIAAIRLECGLQ 1037


>XP_012483758.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii] KJB33712.1
            hypothetical protein B456_006G027700 [Gossypium
            raimondii]
          Length = 1023

 Score =  954 bits (2466), Expect = 0.0
 Identities = 524/929 (56%), Positives = 634/929 (68%), Gaps = 68/929 (7%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 89   GEIFVPLPEKLPKYRVGHTIDSSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 146

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 147  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 206

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 207  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 266

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+K  +E ES SSE N    +   +  K  K ALIQGVG+P++VRFQLPGEAE
Sbjct: 267  ASSDTNVDNKELDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAE 326

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 327  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 386

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 387  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 446

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K+ 
Sbjct: 447  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIA 506

Query: 1378 AENS-------SSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN         SD    ++    AEA +KRTS+KLSM                    P 
Sbjct: 507  SENDINSAKDRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQ 566

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 567  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 626

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 627  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 686

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMVKDEANSKQIA----------EEL-------- 734
            S+E QR +SLKLH+LKL +NI+ELK Q+V D+  S  +A          EE+        
Sbjct: 687  SLEEQRRKSLKLHILKLTRNIDELKHQLVVDKEASNTLAADQSRLPSVEEEMETLQSVKC 746

Query: 733  -RSDM----ATDRHEACSDSINCNSPKEASVDNQQAIQE-------QPVELIDSGGARQS 590
             RSD+    + + H    D     S K   +    +I E       +P  + D     ++
Sbjct: 747  ARSDIEYHASPEGHLEAKDKSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKT 806

Query: 589  EPESSAGLIHKEKQLDEVN------DSVVDTGH-------CVSNNKAME-XXXXXXXXXX 452
            EPE S+  +++ K   E+       + V  + H          NN  ME           
Sbjct: 807  EPEFSSESVNRRKHNTELRALHSQFEMVESSSHHDNLMEENAYNNGPMESMVESASKNLD 866

Query: 451  XXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTH 272
               +P     SN + S + +LSN+ERLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTH
Sbjct: 867  VLISPAADNVSNKMASTAKFLSNKERLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTH 926

Query: 271  FQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAIN 92
            F+KHP AIVNVKGRAKGTSVQEVV +L++ATGAVLVSQEPSK+ILYRGWGA  EP+    
Sbjct: 927  FKKHPLAIVNVKGRAKGTSVQEVVLKLQEATGAVLVSQEPSKVILYRGWGANDEPARGDK 986

Query: 91   DNKVGKNGGEKPSVSPELLQAIRLECGLQ 5
             N        +P+VSPEL+ AI+ ECGLQ
Sbjct: 987  RNVKDSPVQNQPAVSPELIAAIKFECGLQ 1015


>XP_016672839.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic-like
            isoform X3 [Gossypium hirsutum] XP_016672840.1 PREDICTED:
            CRM-domain containing factor CFM2, chloroplastic-like
            isoform X4 [Gossypium hirsutum]
          Length = 1012

 Score =  953 bits (2463), Expect = 0.0
 Identities = 522/918 (56%), Positives = 631/918 (68%), Gaps = 57/918 (6%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 89   GEIFVPLPEKLPKYRVGHTIDTSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 146

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 147  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 206

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 207  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 266

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+K  +E ES SSE N    +   +  K  K ALI GVG+P++VRFQLPGEAE
Sbjct: 267  ASSDTNVDNKELDETESCSSEFNGVKTSTPKATDKMTKRALIHGVGSPSRVRFQLPGEAE 326

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 327  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 386

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 387  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 446

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K+ 
Sbjct: 447  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIA 506

Query: 1378 AEN-------SSSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN       S SD    ++    AEA +KRTS+KLSM                    P 
Sbjct: 507  SENDINSAKDSKSDVFSVRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQ 566

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 567  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 626

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 627  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 686

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMVKDEANSKQIA----------EEL-------- 734
            S+E QR +SLKLH+LKL +NI+ELK Q+V D+  S  +A          EE+        
Sbjct: 687  SLEEQRRKSLKLHILKLTRNIDELKHQLVVDKEASNTLAADQSRLPSVEEEMETLQSVKC 746

Query: 733  -RSDM----ATDRHEACSDSINCNSPKEASVDNQQAIQE-------QPVELIDSGGARQS 590
             RSD+    + + H    D     S K   +    +I E       +P  + D     ++
Sbjct: 747  ARSDIEYHASPEGHLEAKDKSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKT 806

Query: 589  EPESSAGLIHKEKQLDEVN--DSVVDTGHCVSNNKAME-XXXXXXXXXXXXSAPVIKGSS 419
            EPE S+  +++ K   E+    S  +      NN  ME              +P     S
Sbjct: 807  EPEFSSESVNRRKHNTELRALHSQFEMEENAYNNGPMESMVESASKNLDVLISPAADNVS 866

Query: 418  NGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNV 239
            N + S + +LSN+ERLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTHF+KHP AIVNV
Sbjct: 867  NKMASTAKFLSNKERLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTHFKKHPLAIVNV 926

Query: 238  KGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEK 59
            KGRAKGTSVQEVV +L++ATGAVLVSQEPSK+ILYRGWGA  EP+     N        +
Sbjct: 927  KGRAKGTSVQEVVLKLQEATGAVLVSQEPSKVILYRGWGANDEPARGDKRNVKDSPVQNQ 986

Query: 58   PSVSPELLQAIRLECGLQ 5
            P+VSPEL+ AI+ E GLQ
Sbjct: 987  PAVSPELIAAIKFEWGLQ 1004


>XP_017975689.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic isoform
            X1 [Theobroma cacao]
          Length = 1051

 Score =  952 bits (2462), Expect = 0.0
 Identities = 521/947 (55%), Positives = 644/947 (68%), Gaps = 86/947 (9%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFV LP ++PK RVGHT+D SWSTPENPVP  G    S                    
Sbjct: 94   GEIFVSLPEKIPKYRVGHTVDTSWSTPENPVPDPGSGPGS--LMARFREMKRERRKVGRV 151

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLK+GKAGITEGIVNGIHERWR  EVVK
Sbjct: 152  KEEDRAVPSLAELKLSAAELRRLRTVGIGEKRKLKLGKAGITEGIVNGIHERWRRSEVVK 211

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLVVWRSGSKIILYRG +Y+YPYFL+DK+  D+ + +
Sbjct: 212  IVCEDICKMNMKRTHEVLERKTGGLVVWRSGSKIILYRGANYRYPYFLADKIATDDTSSN 271

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+   +E ES SSE+NSA  A  N+  K  KP ++QGVG+P++VRFQLPGEAE
Sbjct: 272  ASPDTNMDNVELHETESCSSEINSAKTAIPNATNKMTKPMIVQGVGSPSRVRFQLPGEAE 331

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LVE+A++LL+ LGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVK  LT+DEMT
Sbjct: 332  LVEEANRLLDELGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKPILTNDEMT 391

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HF LGRN KLQGLAA+I+KLWE+CEI K+AVKRGVQNT+SE MAEE+K+
Sbjct: 392  TLRRLGRPLPCHFVLGRNRKLQGLAASIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKW 451

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN--KLKAENSSSDAVIKQ--- 1343
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +  K  AE S S    ++   
Sbjct: 452  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRRHVIHVEKQGAECSKSKKTAQEVIV 511

Query: 1342 -------------------------RMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXX 1238
                                     +    AEAA+++T  KLSM                
Sbjct: 512  EDTKSGSESKINSAKDQRSNFFGDPKNMKSAEAAIRKTDVKLSMALEKKAKAEKLLAELE 571

Query: 1237 XXXSPPEQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVK 1058
                P + EI KEGIT+EERYMLRK+GL+M  FLLLGRRGVFDGTVENMHLHWKYRELVK
Sbjct: 572  QAEIPQQSEIDKEGITQEERYMLRKVGLRMKSFLLLGRRGVFDGTVENMHLHWKYRELVK 631

Query: 1057 IICKQGSLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNK 878
            II K+ ++E+VHQ+AR LEAESGGILVAVERV+KGYAIIVYRGKNY RP++LRPQTLL K
Sbjct: 632  IISKETNVEAVHQLARMLEAESGGILVAVERVSKGYAIIVYRGKNYERPTSLRPQTLLTK 691

Query: 877  KQALKRSIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEE-----LRSDMAT 716
            +QA+KRS+E QR +SLKLH+L L +N+N+L+ Q+V D EANS Q  E+     ++ +M T
Sbjct: 692  RQAMKRSLEEQRRKSLKLHILNLTRNVNDLEHQLVVDKEANSMQTVEQSSLPLVQEEMET 751

Query: 715  DRH-EACSDSINCNSPKEASVDN-----------------------QQAIQE--QPVELI 614
             +  E     I C +     V++                       Q + QE  +P  + 
Sbjct: 752  LQSVEYTGSVIECPASSGGHVESRDKDGSESTSMKNDKMVAAISIRQPSKQEFMEPSSIH 811

Query: 613  DSGGARQSEPESSAGLIHKEKQL-----------------------DEVNDS-VVDTGHC 506
            D     ++E E SA  ++++                          +E++DS  ++  H 
Sbjct: 812  DGFENHKTESEFSAESVNRKSHATELRALHTQVEMVDTSYPDNLMQEEIDDSGAINAEHG 871

Query: 505  VSNNKAMEXXXXXXXXXXXXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVL 326
            VSNN  ME             +  ++  S+ + S + +LSN++RLLLRKQALK+KKRPVL
Sbjct: 872  VSNNGPMESLVESASMLDVSISSAVENVSDKMASTANFLSNKDRLLLRKQALKMKKRPVL 931

Query: 325  AIGKSNIMTGVAKAINTHFQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSK 146
            A+G+SNI+TGVAKAI  HFQKHP AIVNVKGRAKGTSVQEVV +L++ATGAVLVSQEPSK
Sbjct: 932  AVGRSNIVTGVAKAIRAHFQKHPLAIVNVKGRAKGTSVQEVVLKLQEATGAVLVSQEPSK 991

Query: 145  IILYRGWGAGQEPSTAINDNKVGKNGGEKPSVSPELLQAIRLECGLQ 5
            +ILYRGWGAG E     N N        +P+VSPEL+ AIRLECGLQ
Sbjct: 992  VILYRGWGAGDELGRGDNRNAKDSLAQNRPAVSPELIAAIRLECGLQ 1038


>XP_016672841.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic-like
            isoform X5 [Gossypium hirsutum]
          Length = 1009

 Score =  952 bits (2462), Expect = 0.0
 Identities = 521/915 (56%), Positives = 630/915 (68%), Gaps = 54/915 (5%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 89   GEIFVPLPEKLPKYRVGHTIDTSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 146

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 147  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 206

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 207  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 266

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+K  +E ES SSE N    +   +  K  K ALI GVG+P++VRFQLPGEAE
Sbjct: 267  ASSDTNVDNKELDETESCSSEFNGVKTSTPKATDKMTKRALIHGVGSPSRVRFQLPGEAE 326

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 327  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 386

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 387  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 446

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K+ 
Sbjct: 447  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIA 506

Query: 1378 AEN-------SSSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN       S SD    ++    AEA +KRTS+KLSM                    P 
Sbjct: 507  SENDINSAKDSKSDVFSVRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQ 566

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 567  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 626

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 627  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 686

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMVKD-----EANSKQIAEELRSDM----ATDRH 707
            S+E QR +SLKLH+LKL +NI+ELK Q+V D     E  + Q  +  RSD+    + + H
Sbjct: 687  SLEEQRRKSLKLHILKLTRNIDELKHQLVVDKEVEEEMETLQSVKCARSDIEYHASPEGH 746

Query: 706  EACSDSINCNSPKEASVDNQQAIQE-------QPVELIDSGGARQSEPESSAGLIHKEKQ 548
                D     S K   +    +I E       +P  + D     ++EPE S+  +++ K 
Sbjct: 747  LEAKDKSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKTEPEFSSESVNRRKH 806

Query: 547  LDEVN------DSVVDTGH-------CVSNNKAME-XXXXXXXXXXXXSAPVIKGSSNGL 410
              E+       + V  + H          NN  ME              +P     SN +
Sbjct: 807  NTELRALHSQFEMVESSSHHDNLMEENAYNNGPMESMVESASKNLDVLISPAADNVSNKM 866

Query: 409  PSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVNVKGR 230
             S + +LSN+ERLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTHF+KHP AIVNVKGR
Sbjct: 867  ASTAKFLSNKERLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTHFKKHPLAIVNVKGR 926

Query: 229  AKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGEKPSV 50
            AKGTSVQEVV +L++ATGAVLVSQEPSK+ILYRGWGA  EP+     N        +P+V
Sbjct: 927  AKGTSVQEVVLKLQEATGAVLVSQEPSKVILYRGWGANDEPARGDKRNVKDSPVQNQPAV 986

Query: 49   SPELLQAIRLECGLQ 5
            SPEL+ AI+ E GLQ
Sbjct: 987  SPELIAAIKFEWGLQ 1001


>XP_016668306.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic-like
            isoform X2 [Gossypium hirsutum]
          Length = 1016

 Score =  951 bits (2458), Expect = 0.0
 Identities = 519/919 (56%), Positives = 628/919 (68%), Gaps = 58/919 (6%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 93   GEIFVPLPEKLPKYRVGHTIDTSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 150

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 151  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 210

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 211  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 270

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    +  +K  +E ES SSE N    +   +  K  K ALIQGVG+P++VRFQLPGEAE
Sbjct: 271  ASPDTNVANKELDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAE 330

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 331  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 390

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 391  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 450

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K  
Sbjct: 451  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVNGEGTKTA 510

Query: 1378 AENS-------SSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN         SD    Q+     EA +KRTS+KLSM                    P 
Sbjct: 511  SENDINSAKDHKSDVFSVQKNLNSTEATIKRTSSKLSMALEKKAKAEKLLAQLEQEVIPQ 570

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 571  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 630

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 631  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 690

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMVKD-EANSKQIAEELRSDMATDRHEACSDSIN 683
            S+  QR +SLKLH+LKL +NI+ELK Q+V D EA++K  A++ R     +  E    S+ 
Sbjct: 691  SLVEQRRKSLKLHILKLTRNIDELKHQLVVDKEASNKLAADQSRLPSVEEEMETL-QSVK 749

Query: 682  C------------------NSPKEASVDNQQAIQE------------QPVELIDSGGARQ 593
            C                  + P+  S+ N + I              +P  + D     +
Sbjct: 750  CARSDIEYHASPEGHLEAKDKPESTSMKNDRMIAAVSISQPSEQVLVEPSSIHDGVENHK 809

Query: 592  SEPESSAGLIHKEKQLDEVN--DSVVDTGHCVSNNKAME-XXXXXXXXXXXXSAPVIKGS 422
            +E E S+  +++ K   E+    S  +      NN  ME              +P     
Sbjct: 810  TESEFSSESVNRRKHNTELRALHSQFEMEENAYNNGPMESMVESASKNLDVLISPAADNV 869

Query: 421  SNGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTHFQKHPFAIVN 242
            SN + S + +LSN+ERLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTHF+KHP AIVN
Sbjct: 870  SNKMASTAKFLSNKERLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTHFKKHPLAIVN 929

Query: 241  VKGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAINDNKVGKNGGE 62
            VKGRAKGTSVQEVV +L++ATGAVLVSQEPSK+ILYRGWGA  EP+     N        
Sbjct: 930  VKGRAKGTSVQEVVLKLQEATGAVLVSQEPSKVILYRGWGANDEPARGDKRNVKDSPVQN 989

Query: 61   KPSVSPELLQAIRLECGLQ 5
            +P+VSPEL+ AI+ ECGLQ
Sbjct: 990  RPAVSPELIAAIKFECGLQ 1008


>XP_016672837.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic-like
            isoform X1 [Gossypium hirsutum] XP_016672838.1 PREDICTED:
            CRM-domain containing factor CFM2, chloroplastic-like
            isoform X2 [Gossypium hirsutum]
          Length = 1023

 Score =  949 bits (2454), Expect = 0.0
 Identities = 523/929 (56%), Positives = 633/929 (68%), Gaps = 68/929 (7%)
 Frame = -1

Query: 2587 GEIFVPLPHQLPKQRVGHTIDQSWSTPENPVPGKGFAALSENXXXXXXXXXXXXXXXXXX 2408
            GEIFVPLP +LPK RVGHTID SWSTPENPVP  G    S                    
Sbjct: 89   GEIFVPLPEKLPKYRVGHTIDTSWSTPENPVPDPGSDPGS--LMVRFRDMKRERKKMGRV 146

Query: 2407 XXXXXEAPTVAELSLTEAEIMRLRKLGFGMKKKLKVGKAGITEGIVNGIHERWRSHEVVK 2228
                   P++AEL L+ AE+ RLR +G G K+KLKVGKAGITEGIVNGIHERWR  EVV+
Sbjct: 147  KEEERVVPSLAELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVR 206

Query: 2227 IVCEDLCRTNMKRTHDLLERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDKVLRDENNGD 2048
            IVCED+C+ NMKRTH++LERKTGGLV+WRSGSKIILYRG +YKYPYF +DK+   +++ +
Sbjct: 207  IVCEDICKMNMKRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSN 266

Query: 2047 AMQHMDGDDKNCNEKESHSSEMNSATHAGQNSNFKTAKPALIQGVGTPNKVRFQLPGEAE 1868
            A    + D+K  +E ES SSE N    +   +  K  K ALI GVG+P++VRFQLPGEAE
Sbjct: 267  ASSDTNVDNKELDETESCSSEFNGVKTSTPKATDKMTKRALIHGVGSPSRVRFQLPGEAE 326

Query: 1867 LVEDADKLLEGLGPQFTDWWGYDPLPVDADLLPAVIPGFRKPFRLLPYGVKSKLTDDEMT 1688
            LV +AD+LL+GLGP+FTDWWGY+PLPVD DLLPA+IPG+R+PFRLLPYGVKS LT+DEMT
Sbjct: 327  LVAEADRLLDGLGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMT 386

Query: 1687 TLRRLGRPLPSHFALGRNMKLQGLAAAIIKLWERCEIVKIAVKRGVQNTDSETMAEEIKY 1508
            TLRRLGRPLP HFALGRN KLQGLAA+IIKLWE+CEI KIAVKRGVQNT+SE MAEE+K+
Sbjct: 387  TLRRLGRPLPCHFALGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKW 446

Query: 1507 LTGGTLLSRNNEFIVFYRGKDFLPAAVSSAIEQRRNIVTN-----------------KLK 1379
            LTGGTLLSR+ +FIV YRGKDFLP+AVSSAIE+RR  V +                 K+ 
Sbjct: 447  LTGGTLLSRDKDFIVLYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIA 506

Query: 1378 AEN-------SSSDAVIKQRMFTKAEAALKRTSNKLSMXXXXXXXXXXXXXXXXXXXSPP 1220
            +EN       S SD    ++    AEA +KRTS+KLSM                    P 
Sbjct: 507  SENDINSAKDSKSDVFSVRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQ 566

Query: 1219 EQEIVKEGITEEERYMLRKIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICKQG 1040
            + EI KEGIT EERYMLRK+GL+M PFLLLGRRGVFDGTVENMHLHWKYRELVKII K+ 
Sbjct: 567  QSEIDKEGITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKET 626

Query: 1039 SLESVHQIARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPSTLRPQTLLNKKQALKR 860
            ++E+VHQ A+ LEAESGGILVAVERV+KGYAII YRGKNY RP+ LRPQTLL K++A+KR
Sbjct: 627  NVEAVHQEAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKR 686

Query: 859  SIEAQRCESLKLHVLKLDKNINELKRQMVKDEANSKQIA----------EEL-------- 734
            S+E QR +SLKLH+LKL +NI+ELK Q+V D+  S  +A          EE+        
Sbjct: 687  SLEEQRRKSLKLHILKLTRNIDELKHQLVVDKEASNTLAADQSRLPSVEEEMETLQSVKC 746

Query: 733  -RSDM----ATDRHEACSDSINCNSPKEASVDNQQAIQE-------QPVELIDSGGARQS 590
             RSD+    + + H    D     S K   +    +I E       +P  + D     ++
Sbjct: 747  ARSDIEYHASPEGHLEAKDKSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKT 806

Query: 589  EPESSAGLIHKEKQLDEVN------DSVVDTGH-------CVSNNKAME-XXXXXXXXXX 452
            EPE S+  +++ K   E+       + V  + H          NN  ME           
Sbjct: 807  EPEFSSESVNRRKHNTELRALHSQFEMVESSSHHDNLMEENAYNNGPMESMVESASKNLD 866

Query: 451  XXSAPVIKGSSNGLPSRSLYLSNRERLLLRKQALKIKKRPVLAIGKSNIMTGVAKAINTH 272
               +P     SN + S + +LSN+ERLLLRKQAL +KKRPVLA+G+SNI+TGVAK INTH
Sbjct: 867  VLISPAADNVSNKMASTAKFLSNKERLLLRKQALNMKKRPVLAVGRSNIVTGVAKTINTH 926

Query: 271  FQKHPFAIVNVKGRAKGTSVQEVVSELEQATGAVLVSQEPSKIILYRGWGAGQEPSTAIN 92
            F+KHP AIVNVKGRAKGTSVQEVV +L++ATGAVLVSQEPSK+ILYRGWGA  EP+    
Sbjct: 927  FKKHPLAIVNVKGRAKGTSVQEVVLKLQEATGAVLVSQEPSKVILYRGWGANDEPARGDK 986

Query: 91   DNKVGKNGGEKPSVSPELLQAIRLECGLQ 5
             N        +P+VSPEL+ AI+ E GLQ
Sbjct: 987  RNVKDSPVQNQPAVSPELIAAIKFEWGLQ 1015