BLASTX nr result
ID: Glycyrrhiza36_contig00005421
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza36_contig00005421
(4048 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycy... 1285 0.0
AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrh... 1264 0.0
YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.... 1222 0.0
YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC1003... 1221 0.0
YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL973... 1182 0.0
YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 1136 0.0
YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 1136 0.0
AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus of... 1136 0.0
YP_002149735.1 RNA polymerase beta' subunit [Cicer arietinum] AC... 1132 0.0
AJE72727.1 RNA polymerase beta'' subunit (plastid) [Astragalus c... 1127 0.0
AJE72230.1 RNA polymerase beta'' subunit (plastid) [Oxytropis la... 1125 0.0
AJE71733.1 RNA polymerase beta'' subunit (plastid) [Astragalus c... 1125 0.0
YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medic... 1124 0.0
YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medi... 1117 0.0
AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofer... 1116 0.0
AJE72514.1 RNA polymerase beta'' subunit (plastid) [Medicago lup... 1113 0.0
YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula] 1112 0.0
AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago... 1112 0.0
AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 1112 0.0
AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 1112 0.0
>YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycyrrhiza glabra]
AGU00070.1 RNA polymerase beta' subunit (chloroplast)
[Glycyrrhiza glabra]
Length = 1388
Score = 1285 bits (3324), Expect = 0.0
Identities = 651/675 (96%), Positives = 653/675 (96%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 714 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNRKQSKKMKNWIYVQWIATTKKKYF 773
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 774 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 833
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI
Sbjct: 834 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 893
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF
Sbjct: 894 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 953
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISIT
Sbjct: 954 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITKNLKN 1013
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
KETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTF+IISLG
Sbjct: 1014 LQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLG 1073
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG
Sbjct: 1074 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1133
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1134 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 1193
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1194 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1253
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1254 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1313
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEK+NNFFEVEIRNILFHHRKL
Sbjct: 1314 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKL 1373
Query: 333 FDFFISKNLCDTSEI 289
FDFFISKNLCDTSEI
Sbjct: 1374 FDFFISKNLCDTSEI 1388
>AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrhiza lepidota]
Length = 1388
Score = 1264 bits (3271), Expect = 0.0
Identities = 641/675 (94%), Positives = 646/675 (95%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 714 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNRKQSKKMKNWIYVQWIATTKKKYF 773
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 774 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 833
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI
Sbjct: 834 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 893
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SDNESDRININPFYSIHSKAKIQQSLSQNHGTIR+LLNRNKEC+SLIILSSSNCFQTR F
Sbjct: 894 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRILLNRNKECRSLIILSSSNCFQTRPF 953
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVKYHNEIKKGINKFKKDP+IPIQNSLGPLGIALPISNFYSFYRLITHNQISIT
Sbjct: 954 NNVKYHNEIKKGINKFKKDPLIPIQNSLGPLGIALPISNFYSFYRLITHNQISITKNLKN 1013
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
KETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHN CEKTF+IISLG
Sbjct: 1014 LQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNYCEKTFTIISLG 1073
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL+EG
Sbjct: 1074 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYEG 1133
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1134 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 1193
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF PG
Sbjct: 1194 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPG 1253
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1254 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1313
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMH SRSRQ NKITLEKK NFFEVEIRNILFHHRKL
Sbjct: 1314 DWLKGLKENVVLGGMIPVGTGFKRIMHHSRSRQDNKITLEKKKNFFEVEIRNILFHHRKL 1373
Query: 333 FDFFISKNLCDTSEI 289
FDFF SKNLCDTSEI
Sbjct: 1374 FDFFNSKNLCDTSEI 1388
>YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.1 RpoC2
(chloroplast) [Wisteria sinensis]
Length = 1367
Score = 1222 bits (3163), Expect = 0.0
Identities = 620/672 (92%), Positives = 634/672 (94%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 699 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNWKESKKTKNWIYVQWIATTKKKYF 758
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSI+GISDTRIQLVR
Sbjct: 759 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIQGISDTRIQLVR 818
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNW+QDKKSSSI EALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSGSGLI
Sbjct: 819 TCLVLNWNQDKKSSSIAEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGSGLI 878
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SDNESD+ININPFYSIHS AKIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 879 SDNESDQININPFYSIHSTAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 938
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVKYHN IKKGINKFKKDPII I+NSLGPLGIAL I+NFYSFYRLITHNQISIT
Sbjct: 939 NNVKYHNGIKKGINKFKKDPIISIKNSLGPLGIALQIANFYSFYRLITHNQISITKNLQL 998
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYY MDENEKIYKPDLY+NI+LNPFHLNWYFLNHN EKTF+IISLG
Sbjct: 999 DKLK---ETFQVIKYYFMDENEKIYKPDLYSNIILNPFHLNWYFLNHNYYEKTFTIISLG 1055
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLK KSGQV+TVQ+DSVIIRSANPYLATPGATIHGHYGEIL+EG
Sbjct: 1056 QFICENICIAQTKNGPHLKQKSGQVITVQIDSVIIRSANPYLATPGATIHGHYGEILYEG 1115
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1116 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 1175
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1176 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1235
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1236 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1295
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGF++IMH SRSRQHNKITLEKK N FEVEIRNILFHHRKL
Sbjct: 1296 DWLKGLKENVVLGGMIPVGTGFQKIMHHSRSRQHNKITLEKKKNLFEVEIRNILFHHRKL 1355
Query: 333 FDFFISKNLCDT 298
FDFFISKNLCDT
Sbjct: 1356 FDFFISKNLCDT 1367
>YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC10039.1 RpoC2
(chloroplast) [Wisteria floribunda]
Length = 1367
Score = 1221 bits (3160), Expect = 0.0
Identities = 619/672 (92%), Positives = 634/672 (94%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 699 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKIWKESKKTKNWIYVQWIATTKKKYF 758
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSI+GISDTRIQLVR
Sbjct: 759 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIQGISDTRIQLVR 818
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNW+QDKKSSSI EALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSGSGLI
Sbjct: 819 TCLVLNWNQDKKSSSIAEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGSGLI 878
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SDNE+D+ININPFYSIHS AKIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 879 SDNETDQININPFYSIHSTAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 938
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVKYHN IKKGINKFKKDPII I+NSLGPLGIAL I+NFYSFYRLITHNQISIT
Sbjct: 939 NNVKYHNGIKKGINKFKKDPIISIKNSLGPLGIALQIANFYSFYRLITHNQISITKNLQL 998
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYY MDENEKIYKPDLY+NI+LNPFHLNWYFLNHN EKTF+IISLG
Sbjct: 999 DKLK---ETFQVIKYYFMDENEKIYKPDLYSNIILNPFHLNWYFLNHNYYEKTFTIISLG 1055
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLK KSGQV+TVQ+DSVIIRSANPYLATPGATIHGHYGEIL+EG
Sbjct: 1056 QFICENICIAQTKNGPHLKQKSGQVITVQIDSVIIRSANPYLATPGATIHGHYGEILYEG 1115
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1116 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 1175
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1176 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1235
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1236 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1295
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGF++IMH SRSRQHNKITLEKK N FEVEIRNILFHHRKL
Sbjct: 1296 DWLKGLKENVVLGGMIPVGTGFQKIMHHSRSRQHNKITLEKKKNLFEVEIRNILFHHRKL 1355
Query: 333 FDFFISKNLCDT 298
FDFFISKNLCDT
Sbjct: 1356 FDFFISKNLCDT 1367
>YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL97397.1 RpoC2
(chloroplast) [Caragana microphylla]
Length = 1372
Score = 1182 bits (3057), Expect = 0.0
Identities = 602/660 (91%), Positives = 617/660 (93%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
+ELKIFSG+IHFPGEMDKISRHSAILIPPGTV NW YVQWIATTKKKYF
Sbjct: 716 MELKIFSGNIHFPGEMDKISRHSAILIPPGTVKKKWKESKKMN-NWTYVQWIATTKKKYF 774
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 834
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR D SG G I
Sbjct: 835 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDSSGLGCI 894
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SDNESDRININPF SIHSKAKIQQS SQN GTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 895 SDNESDRININPFLSIHSKAKIQQSRSQNQGTIRMLLNRNKECRSLIILSSSNCFQMRPF 954
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVKYHN I+KGINKFKKD IIPI+NSLGPLGIAL I+NFYSFYR ITHNQISIT
Sbjct: 955 NNVKYHNGIRKGINKFKKDSIIPIKNSLGPLGIALQIANFYSFYRSITHNQISITKNLQL 1014
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYYLMDENEKI KPDLY+NIVLNPFHLNWYFL+HN CEKTF+IISLG
Sbjct: 1015 DKFK---ETFQVIKYYLMDENEKILKPDLYSNIVLNPFHLNWYFLHHNYCEKTFTIISLG 1071
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL+EG
Sbjct: 1072 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYEG 1131
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DI VTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1132 DIFVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGF 1191
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1192 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1251
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1252 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1311
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKK N FEVEIRN+LFHH+K+
Sbjct: 1312 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKKNLFEVEIRNLLFHHKKI 1371
>YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus]
AMQ99218.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus mongholicus]
Length = 1376
Score = 1136 bits (2939), Expect = 0.0
Identities = 590/664 (88%), Positives = 605/664 (91%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYF
Sbjct: 720 IELKIFSGNIHFPGEMDKISRPSAILIPPRTVKKKRKESKKLN-NWTYVQWITTTKKKYF 778
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 779 VLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVR 838
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GLI
Sbjct: 839 TCLVLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGLI 898
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 899 SD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 956
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVK N IKK DPII I+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 957 NNVKDPNGIKK-------DPIIAIKNSLGPLGIALQIANFYSFSRLITHNQISITKNLQL 1009
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKTF+IISLG
Sbjct: 1010 DKLK---ETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTFTIISLG 1066
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+EG
Sbjct: 1067 QFICENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYEG 1126
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1127 DILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGF 1186
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1187 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1246
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1247 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1306
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEKK N FEVEIRN+LFHHRKL
Sbjct: 1307 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRKL 1366
Query: 333 FDFF 322
FDFF
Sbjct: 1367 FDFF 1370
>YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus
var. nakaianus] ALH42736.1 RNA polymerase beta'' subunit
(chloroplast) [Astragalus mongholicus var. nakaianus]
ANK78900.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus membranaceus var. membranaceus]
Length = 1372
Score = 1136 bits (2939), Expect = 0.0
Identities = 590/664 (88%), Positives = 605/664 (91%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYF
Sbjct: 716 IELKIFSGNIHFPGEMDKISRPSAILIPPRTVKKKRKESKKLN-NWTYVQWITTTKKKYF 774
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVR 834
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GLI
Sbjct: 835 TCLVLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGLI 894
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 895 SD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVK N IKK DPII I+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 953 NNVKDPNGIKK-------DPIIAIKNSLGPLGIALQIANFYSFSRLITHNQISITKNLQL 1005
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKTF+IISLG
Sbjct: 1006 DKLK---ETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTFTIISLG 1062
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+EG
Sbjct: 1063 QFICENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYEG 1122
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1123 DILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGF 1182
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1183 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1242
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1243 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1302
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEKK N FEVEIRN+LFHHRKL
Sbjct: 1303 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRKL 1362
Query: 333 FDFF 322
FDFF
Sbjct: 1363 FDFF 1366
>AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus officinalis]
AJE71662.1 RNA polymerase beta'' subunit (plastid)
[Melilotus albus]
Length = 1376
Score = 1136 bits (2939), Expect = 0.0
Identities = 585/666 (87%), Positives = 609/666 (91%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSG+IHFPGEMDKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 716 IELKIFSGNIHFPGEMDKISRHSSILIPPGTVKKKKWKESKKINNWIYVQWIATTKKKYF 775
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+F KLFP+DLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 776 VLVRPVILYEIPDSIHFGKLFPKDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 835
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 836 TCLVLNWDQAKKSSSIEEAPASFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 895
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESD ININPF+SIHSKAKIQQSLSQNHGTIRMLLNRNKE +S IILSSSNCFQ R F
Sbjct: 896 ADNESDPININPFFSIHSKAKIQQSLSQNHGTIRMLLNRNKEYRSWIILSSSNCFQMRPF 955
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQN--SLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVK+HN IKK +PIIPI N SLGPLGIAL ++NFYS YRLITHNQI+I
Sbjct: 956 NNVKFHNGIKK-------NPIIPINNNNSLGPLGIALQVANFYSLYRLITHNQIAIIKNL 1008
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E FQVIKYYLMDENEKI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IIS
Sbjct: 1009 QLDKLK---EIFQVIKYYLMDENEKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIIS 1065
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICIAQ KNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL+
Sbjct: 1066 LGQFICENICIAQMKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILY 1125
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
+GDILVTFIYEKSRSGDITQGLPKVEQILE+RS+DSISMNLEKRIDAWNECITRILGIPW
Sbjct: 1126 QGDILVTFIYEKSRSGDITQGLPKVEQILEIRSVDSISMNLEKRIDAWNECITRILGIPW 1185
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1186 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1245
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1246 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1305
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGGMIPVGTGFKRI+HR RSRQHNKITLEKK FEVEIRN+LFHHR
Sbjct: 1306 RIDWLKGLKENVVLGGMIPVGTGFKRIIHRLRSRQHNKITLEKK-KLFEVEIRNLLFHHR 1364
Query: 339 KLFDFF 322
KLFDFF
Sbjct: 1365 KLFDFF 1370
>YP_002149735.1 RNA polymerase beta' subunit [Cicer arietinum] ACH41072.1 RNA
polymerase beta' subunit (chloroplast) [Cicer arietinum]
Length = 1376
Score = 1132 bits (2927), Expect = 0.0
Identities = 579/666 (86%), Positives = 602/666 (90%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSG+IHFPGEMDKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 715 IELKIFSGNIHFPGEMDKISRHSSILIPPGTVKKKKRKEAKKINNWIYVQWIATTKKKYF 774
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLEL+VLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELRVLNYILYGNGKSIRGISDTRIQLVR 834
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYF+RIDLVKSH SYIRKR DPSG GLI
Sbjct: 835 TCLVLNWDQGKKSSSIEEAPASFVEVSTNGLIEYFIRIDLVKSHMSYIRKRNDPSGLGLI 894
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
D ESDR+NINPF+SIHSK KIQQSL QNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 895 PDKESDRVNINPFFSIHSKTKIQQSLIQNHGTIRMLLNRNKECRSWIILSSSNCFQMRPF 954
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVKYHN IKK DPIIPI +NSLGPLGIAL ++N+YSFYRLITHNQ+SIT
Sbjct: 955 NNVKYHNGIKK-------DPIIPINNKNSLGPLGIALQVANYYSFYRLITHNQVSITNNL 1007
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E V+KYYLMDEN+KI+KPDL NIVLNPFHLNWYFL+HN EKT +IIS
Sbjct: 1008 QLDKLI---EICHVMKYYLMDENDKIFKPDLSKNIVLNPFHLNWYFLHHNYFEKTLTIIS 1064
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICI Q KN PHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL
Sbjct: 1065 LGQFICENICITQKKNEPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILD 1124
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
EGDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECI RILGIPW
Sbjct: 1125 EGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECIPRILGIPW 1184
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1185 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1244
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1245 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1304
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGG+IPVGTGFKRIMHRSRSRQHNKITL+KK FEVEIRN+L HHR
Sbjct: 1305 RIDWLKGLKENVVLGGIIPVGTGFKRIMHRSRSRQHNKITLKKKKKLFEVEIRNLLLHHR 1364
Query: 339 KLFDFF 322
KLFDF+
Sbjct: 1365 KLFDFY 1370
>AJE72727.1 RNA polymerase beta'' subunit (plastid) [Astragalus crassicarpus]
Length = 1374
Score = 1127 bits (2914), Expect = 0.0
Identities = 582/664 (87%), Positives = 603/664 (90%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
+ELKIFSG+I+FPGEMDKISR SAILIPP TV NW YVQWI TTKKKYF
Sbjct: 716 MELKIFSGNIYFPGEMDKISRPSAILIPPRTVKKKGKESKKLN-NWTYVQWITTTKKKYF 774
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVR 834
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNW QDK+SSSIEEA ASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSG GLI
Sbjct: 835 TCLVLNWAQDKRSSSIEEAFASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGLGLI 894
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ + F
Sbjct: 895 SD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMKPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVK N IK KKDPII I+NSLGP+GIAL I+NFYSF RLITHNQIS T
Sbjct: 953 NNVKDPNGIK-----IKKDPIIAIKNSLGPVGIALQIANFYSFSRLITHNQISRTKNLQL 1007
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKT +IISLG
Sbjct: 1008 DKLK---ETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTLTIISLG 1064
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPH KLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+EG
Sbjct: 1065 QFICENICIAQTKNGPHFKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYEG 1124
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVE+ILE+RSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1125 DILVTFIYEKSRSGDITQGLPKVEKILEIRSIDSISMNLEKRIDAWNECITRILGIPWGF 1184
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1185 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1244
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEA+CYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1245 ELIGLLRAERTGRALEEAVCYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1304
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEKK N FEVEIRN+LFHHRKL
Sbjct: 1305 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRKL 1364
Query: 333 FDFF 322
FDFF
Sbjct: 1365 FDFF 1368
>AJE72230.1 RNA polymerase beta'' subunit (plastid) [Oxytropis lambertii]
Length = 1368
Score = 1125 bits (2909), Expect = 0.0
Identities = 583/664 (87%), Positives = 600/664 (90%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
+ELKIFSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYF
Sbjct: 714 MELKIFSGNIHFPGEMDKISRPSAILIPPRTVKKKKWKESKKLNNWTYVQWITTTKKKYF 773
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 774 VLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVR 833
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNW QDK+SSSI+EALASFVEVST GLIEYFLRIDLVKSHTSYIRKR DPSG GLI
Sbjct: 834 TCLVLNWAQDKRSSSIDEALASFVEVSTKGLIEYFLRIDLVKSHTSYIRKRNDPSGLGLI 893
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SD RIN NPF SIHSK KIQQS SQNHGTIRMLLNRNK +SLIILSSSNCFQ R F
Sbjct: 894 SD----RINRNPFLSIHSKTKIQQSFSQNHGTIRMLLNRNKG-RSLIILSSSNCFQMRPF 948
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVK N IKK DPIIPI+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 949 NNVKDPNGIKK-------DPIIPIKNSLGPLGIALQIANFYSFSRLITHNQISITKNLQL 1001
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYYLMDENEKI+KPDLY+NIVLNPFHLNWYFL+HN CEKT +IISLG
Sbjct: 1002 DKLK---ETFQVIKYYLMDENEKIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTLTIISLG 1058
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QF+CENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSANPYLATPGATIHGHYGEIL+EG
Sbjct: 1059 QFLCENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSANPYLATPGATIHGHYGEILYEG 1118
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1119 DILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGF 1178
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1179 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1238
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1239 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1298
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRI HRSRS Q NKITLEKK N FEVEIRN+LFHHRKL
Sbjct: 1299 DWLKGLKENVVLGGMIPVGTGFKRITHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRKL 1358
Query: 333 FDFF 322
FDFF
Sbjct: 1359 FDFF 1362
>AJE71733.1 RNA polymerase beta'' subunit (plastid) [Astragalus canadensis]
Length = 1372
Score = 1125 bits (2909), Expect = 0.0
Identities = 582/664 (87%), Positives = 604/664 (90%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
+ELKIFSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYF
Sbjct: 716 MELKIFSGNIHFPGEMDKISRPSAILIPPRTVKKKRKESKKLN-NWTYVQWITTTKKKYF 774
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVR 834
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GLI
Sbjct: 835 TCLVLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGLI 894
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
SD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ + F
Sbjct: 895 SD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMKPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NNVK N IKK DPII I+NSLGP+GIAL I+NFYSF RLITHNQISIT
Sbjct: 953 NNVKDPNVIKK-------DPIIAIKNSLGPVGIALQIANFYSFSRLITHNQISITKNLQL 1005
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL++N CEKT +IISLG
Sbjct: 1006 DKLK---ETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHNNFCEKTLTIISLG 1062
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIAQTKNGPHLKLKSGQVLTVQ DS+IIRSA PYLATPGATIHGHYGEIL+EG
Sbjct: 1063 QFICENICIAQTKNGPHLKLKSGQVLTVQKDSLIIRSAKPYLATPGATIHGHYGEILYEG 1122
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNEC+TRILGIPWGF
Sbjct: 1123 DILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECVTRILGIPWGF 1182
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1183 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1242
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1243 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1302
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKI+LEKK N FEVEIRN+LFHHRKL
Sbjct: 1303 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKISLEKKKNLFEVEIRNLLFHHRKL 1362
Query: 333 FDFF 322
FDFF
Sbjct: 1363 FDFF 1366
>YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medicago hybrida]
YP_009141687.1 RNA polymerase beta' subunit (chloroplast)
[Medicago papillosa] AIL56137.1 RNA polymerase beta'
subunit (chloroplast) [Medicago hybrida] AIL56212.1 RNA
polymerase beta' subunit (chloroplast) [Medicago
papillosa] AMC32363.1 RNA polymerase beta'' subunit
(chloroplast) [Medicago sativa] ANS57907.1 RNA polymerase
beta' subunit (chloroplast) [Medicago sativa]
Length = 1370
Score = 1124 bits (2907), Expect = 0.0
Identities = 579/666 (86%), Positives = 606/666 (90%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWI TTKKKYF
Sbjct: 714 IELKIFSGNIHFPGERDKISRHSSILIPPGTVKKKWKESKKIH-NWIYVQWITTTKKKYF 772
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 892
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESDRININPF+SIHSKAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHSKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQN--SLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVKYHN IKK +P IPI N SLGPLGIA + NFYS YRLITHNQISI
Sbjct: 953 NNVKYHNGIKK-------NPKIPINNNNSLGPLGIARQVGNFYSLYRLITHNQISIMKNF 1005
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IIS
Sbjct: 1006 QLDKIT---EIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYDCEKTFTIIS 1062
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATPGATIHGHYGEIL+
Sbjct: 1063 LGQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPGATIHGHYGEILY 1122
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
+GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPW
Sbjct: 1123 QGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPW 1182
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1183 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1242
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1243 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1302
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1303 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSTQYNKITLKKK-KLFEVEIRNLLFHHR 1361
Query: 339 KLFDFF 322
KLFD F
Sbjct: 1362 KLFDSF 1367
>YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medicago falcata]
AOG66214.1 RNA polymerase beta'' subunit (chloroplast)
[Medicago sativa] APC60490.1 RNA polymerase beta''
subunit (chloroplast) [Medicago falcata]
Length = 1374
Score = 1117 bits (2890), Expect = 0.0
Identities = 576/666 (86%), Positives = 605/666 (90%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWI T+KKKYF
Sbjct: 718 IELKIFSGNIHFPGERDKISRHSSILIPPGTVKKKWKESKKIN-NWIYVQWITTSKKKYF 776
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 777 VLVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 836
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 837 TCLVLNWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 896
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESDRININPF+SIHSKAK+++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 897 ADNESDRININPFFSIHSKAKMKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 956
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQN--SLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVKYHN IKK +P IPI N SLGPLGIA + NF S YRLITHNQISI
Sbjct: 957 NNVKYHNGIKK-------NPKIPINNNNSLGPLGIARQVGNFDSLYRLITHNQISIMKNF 1009
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IIS
Sbjct: 1010 QLDKIT---EIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYDCEKTFTIIS 1066
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATPGATIHGHYGEIL+
Sbjct: 1067 LGQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPGATIHGHYGEILY 1126
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
+GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPW
Sbjct: 1127 QGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPW 1186
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1187 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1246
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1247 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1306
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1307 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSTQYNKITLKKK-KLFEVEIRNLLFHHR 1365
Query: 339 KLFDFF 322
KLFD F
Sbjct: 1366 KLFDSF 1371
>AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofera tinctoria]
Length = 1376
Score = 1116 bits (2886), Expect = 0.0
Identities = 576/665 (86%), Positives = 602/665 (90%), Gaps = 2/665 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGT-VXXXXXXXXXXXKNWIYVQWIATTKKKY 2137
IELKIFSG+I+FPGEMDKISRHSAILIPPGT V KNWIYVQWI TTKKKY
Sbjct: 717 IELKIFSGNIYFPGEMDKISRHSAILIPPGTTVKKKNSKESKKKKNWIYVQWITTTKKKY 776
Query: 2136 FVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLV 1957
FVLVRPVILYEI D IN VKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLV
Sbjct: 777 FVLVRPVILYEIADGINLVKLFPQDLFQERDNLELKVINYILYGNGKSIRGISDTRIQLV 836
Query: 1956 RTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGL 1777
RTCLVLNWDQDKKSSSIEEA ASFVEVSTNGLI FLRIDLVKSH SY RKR D SGSGL
Sbjct: 837 RTCLVLNWDQDKKSSSIEEARASFVEVSTNGLIGDFLRIDLVKSHISYFRKRNDLSGSGL 896
Query: 1776 ISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRS 1597
ISDNES NINPFYSI+SKAKIQQSLSQNHGTIRMLLNRNKEC+SLIILSS NCFQ
Sbjct: 897 ISDNESHPTNINPFYSIYSKAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSYNCFQMGL 956
Query: 1596 FNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXX 1417
FN+ KYHN IK+GINK K+DPIIPI+NSLGPLGIAL +SNF SFY LITHNQISI
Sbjct: 957 FNDGKYHNGIKEGINKLKRDPIIPIKNSLGPLGIALQVSNFDSFYHLITHNQISINQNWK 1016
Query: 1416 XXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 1237
ETFQV+KYYLMDENE+IYKPDL +NIVLNPFHLNWYFL+HN CEKTF+IISL
Sbjct: 1017 LDKLK---ETFQVLKYYLMDENERIYKPDLCSNIVLNPFHLNWYFLHHNYCEKTFTIISL 1073
Query: 1236 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 1057
GQFICEN+CIAQTKNGPHLK SGQ+LTVQMDSV+IRSANPYLATPGAT+HGHYGEIL+E
Sbjct: 1074 GQFICENVCIAQTKNGPHLK--SGQILTVQMDSVVIRSANPYLATPGATVHGHYGEILYE 1131
Query: 1056 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 877
GDILVTFIYEKSRSGDITQGLPKVEQ+LEVRSIDSISMNLEKRIDAWN ITRILGIPWG
Sbjct: 1132 GDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNGRITRILGIPWG 1191
Query: 876 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 697
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1192 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1251
Query: 696 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 517
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1252 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1311
Query: 516 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLE-KKNNFFEVEIRNILFHHR 340
IDWLKGLKENVVLGGMIPVGTGFKRIM+ SR RQHNKITLE KK N FE ++R+ILFHHR
Sbjct: 1312 IDWLKGLKENVVLGGMIPVGTGFKRIMYHSRPRQHNKITLETKKKNLFEGKMRDILFHHR 1371
Query: 339 KLFDF 325
+ F F
Sbjct: 1372 EFFFF 1376
>AJE72514.1 RNA polymerase beta'' subunit (plastid) [Medicago lupulina]
Length = 1368
Score = 1113 bits (2878), Expect = 0.0
Identities = 571/662 (86%), Positives = 601/662 (90%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELKIFSG+IHFPGE DKISRH++ILIPP TV NWIYVQWIATTKKK F
Sbjct: 714 IELKIFSGNIHFPGERDKISRHNSILIPPRTVKKKWKESKKIN-NWIYVQWIATTKKKSF 772
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 892
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESDRININPF+SIHSKAKIQ+SLSQNHGTIRM LNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHSKAKIQKSLSQNHGTIRMFLNRNKECRSWIILSSSNCFQIRPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 1414
NN+KYHN IKK +P IPI NSLGPLGIA + NF+S YRLITHNQISI
Sbjct: 953 NNLKYHNGIKK-------NPKIPINNSLGPLGIARQVGNFFSLYRLITHNQISIMKNFQL 1005
Query: 1413 XXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISLG 1234
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISLG
Sbjct: 1006 DKIT---EIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISLG 1062
Query: 1233 QFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEG 1054
QFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYL TPGATIHGHYGEIL++G
Sbjct: 1063 QFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLVTPGATIHGHYGEILYQG 1122
Query: 1053 DILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGF 874
DILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGF
Sbjct: 1123 DILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGF 1182
Query: 873 LIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 694
LIGAELTIAQSRISL+NKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG
Sbjct: 1183 LIGAELTIAQSRISLLNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 1242
Query: 693 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 514
ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1243 ELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1302
Query: 513 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRKL 334
DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+KK FEVEIRN+LFHHRKL
Sbjct: 1303 DWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRKL 1361
Query: 333 FD 328
F+
Sbjct: 1362 FE 1363
>YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula]
Length = 1374
Score = 1112 bits (2877), Expect = 0.0
Identities = 573/666 (86%), Positives = 602/666 (90%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 718 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 776
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 777 VLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 836
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 837 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 896
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 897 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 956
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQN--SLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVKYHN IKK +P IPI N SLGPLGIA + NFYS Y LITHNQISI
Sbjct: 957 NNVKYHNGIKK-------NPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISIMKNF 1009
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IIS
Sbjct: 1010 QLDKIT---EIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIIS 1066
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL+
Sbjct: 1067 LGQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILY 1126
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
+GDILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPW
Sbjct: 1127 QGDILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPW 1186
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1187 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1246
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1247 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1306
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1307 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHR 1365
Query: 339 KLFDFF 322
LFD F
Sbjct: 1366 NLFDSF 1371
>AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago truncatula f.
tricycla]
Length = 1370
Score = 1112 bits (2877), Expect = 0.0
Identities = 574/666 (86%), Positives = 602/666 (90%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 714 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 772
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+F KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFRKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 892
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQN--SLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVKYHN IKK +P IPI N SLGPLGIA + NFYS YRLITHNQISI
Sbjct: 953 NNVKYHNGIKK-------NPKIPINNNNSLGPLGIARQVGNFYSLYRLITHNQISIMKNF 1005
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IIS
Sbjct: 1006 QLDKIT---EIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIIS 1062
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL+
Sbjct: 1063 LGQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILY 1122
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
+GDILVTFIYEKSRSGDITQGLPKVE+ILE+RSIDSISMNLEKRIDAWNECITRILGIPW
Sbjct: 1123 QGDILVTFIYEKSRSGDITQGLPKVERILEIRSIDSISMNLEKRIDAWNECITRILGIPW 1182
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1183 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1242
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1243 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1302
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL KK FEVEIRN+LFHHR
Sbjct: 1303 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITL-KKEKLFEVEIRNLLFHHR 1361
Query: 339 KLFDFF 322
LFD F
Sbjct: 1362 NLFDSF 1367
>AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
Length = 1370
Score = 1112 bits (2877), Expect = 0.0
Identities = 573/666 (86%), Positives = 602/666 (90%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 714 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 772
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 892
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQN--SLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVKYHN IKK +P IPI N SLGPLGIA + NFYS Y LITHNQISI
Sbjct: 953 NNVKYHNGIKK-------NPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISIMKNF 1005
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IIS
Sbjct: 1006 QLDKIT---EIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIIS 1062
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL+
Sbjct: 1063 LGQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILY 1122
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
+GDILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPW
Sbjct: 1123 QGDILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPW 1182
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1183 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1242
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1243 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1302
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1303 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHR 1361
Query: 339 KLFDFF 322
LFD F
Sbjct: 1362 NLFDSF 1367
>AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
AFR60049.1 RNA polymerase beta'' subunit (plastid)
[Medicago truncatula]
Length = 1370
Score = 1112 bits (2877), Expect = 0.0
Identities = 573/666 (86%), Positives = 602/666 (90%), Gaps = 2/666 (0%)
Frame = -2
Query: 2313 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 2134
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 714 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 772
Query: 2133 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 1954
VLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 1953 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 1774
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 892
Query: 1773 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 1594
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 952
Query: 1593 NNVKYHNEIKKGINKFKKDPIIPIQN--SLGPLGIALPISNFYSFYRLITHNQISITXXX 1420
NNVKYHN IKK +P IPI N SLGPLGIA + NFYS Y LITHNQISI
Sbjct: 953 NNVKYHNGIKK-------NPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISIMKNF 1005
Query: 1419 XXXXXXXXKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIIS 1240
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IIS
Sbjct: 1006 QLDKIT---EIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIIS 1062
Query: 1239 LGQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILF 1060
LGQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL+
Sbjct: 1063 LGQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILY 1122
Query: 1059 EGDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPW 880
+GDILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPW
Sbjct: 1123 QGDILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPW 1182
Query: 879 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 700
GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL
Sbjct: 1183 GFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFL 1242
Query: 699 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 520
PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1243 PGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRG 1302
Query: 519 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHR 340
RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1303 RIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHR 1361
Query: 339 KLFDFF 322
LFD F
Sbjct: 1362 NLFDSF 1367