BLASTX nr result

ID: Glycyrrhiza36_contig00005396 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza36_contig00005396
         (815 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

WP_068534654.1 translation initiation factor IF-2 [Paenibacillus...    58   6e-06

>WP_068534654.1 translation initiation factor IF-2 [Paenibacillus glacialis]
           OAB41378.1 translation initiation factor IF-2
           [Paenibacillus glacialis]
          Length = 861

 Score = 58.2 bits (139), Expect = 6e-06
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
 Frame = -1

Query: 629 RSKTGDPHGSKDTDNQQHQKKPATDIK------------NITAKKQN*KRSHKPLQSKLG 486
           + ++GD H    T +    KK A  IK             +TA+ +  K+  K +     
Sbjct: 67  KRESGDSHAMATTSSV---KKDAVVIKPNEASASRHENSTVTAQDETKKQQEKQVGMNNN 123

Query: 485 PKSNHY--------QTNTSTHIKAPPNGGRSRQPSSGRTRPKTAK--HVAH*RRNSSGGD 336
           P +N+         Q++T T      N G +R  SSG  RP +++       ++ S+G +
Sbjct: 124 PNNNNGTGTVTSRPQSSTGTSRPQSSNNGSTRPQSSGAARPASSQGGQRPSAQQGSNGAN 183

Query: 335 VPSNPSKG-GGGPTERKPT------------PTGPAERHLPAEEGDNSGRTRPKTASQIT 195
            PS+PS+G GGG     PT            PT  A R   A +GDN G  + ++ +  +
Sbjct: 184 RPSSPSQGQGGGQRSSSPTARPQSQNRSTGAPTRDASRTDGAAQGDNRGANKNRSNNNGS 243

Query: 194 SQTKSQKGGNAREEQNAGN 138
            +    KGGN R  +   N
Sbjct: 244 RRFDDNKGGNYRNNRGGKN 262


Top