BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza35_contig00030240
         (304 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

WP_061979842.1 MULTISPECIES: RNA polymerase subunit sigma [Brady...   166   2e-50
WP_077470469.1 RNA polymerase subunit sigma [Rhizobium sp. P44RR...   108   1e-27
WP_068390184.1 RNA polymerase subunit sigma [Rhizobium sp. AC27/...   108   1e-27
WP_034848196.1 RNA polymerase sigma factor [Inquilinus limosus] ...   107   2e-27
WP_047453662.1 RNA polymerase sigma factor [Agrobacterium rhizog...   106   5e-27
WP_047559486.1 RNA polymerase sigma factor [Rhizobium leguminosa...   105   1e-26
WP_042475271.1 RNA polymerase sigma factor [Agrobacterium rhizog...   105   2e-26
WP_034510957.1 RNA polymerase sigma factor [Agrobacterium rhizog...   105   2e-26
WP_037195762.1 MULTISPECIES: RNA polymerase sigma factor [Rhizob...   104   4e-26
WP_075853418.1 RNA polymerase subunit sigma [Rhizobium hainanens...   103   9e-26
SCB21723.1 RNA polymerase sigma-70 factor, ECF subfamily [Rhizob...   103   9e-26
WP_034481203.1 RNA polymerase sigma factor [Agrobacterium rhizog...   103   9e-26
WP_028751592.1 RNA polymerase sigma factor [Rhizobium leucaenae]      103   9e-26
ACM28464.1 RNA polymerase sigma factor protein [Agrobacterium ra...   103   9e-26
WP_047634087.1 RNA polymerase sigma factor [Rhizobium tropici] O...   103   1e-25
WP_037219296.1 MULTISPECIES: RNA polymerase sigma factor [Rhizob...   103   1e-25
WP_004127222.1 RNA polymerase sigma factor protein [Rhizobium fr...   102   2e-25
WP_069611437.1 RNA polymerase subunit sigma [Rhizobium sp. YK2] ...   102   2e-25
WP_007698924.1 MULTISPECIES: RNA polymerase sigma factor [Rhizob...   102   3e-25
OJY04981.1 RNA polymerase subunit sigma [Rhizobiales bacterium 6...   101   7e-25

>WP_061979842.1 MULTISPECIES: RNA polymerase subunit sigma [Bradyrhizobium]
          Length = 185

 Score =  166 bits (420), Expect = 2e-50
 Identities = 87/87 (100%), Positives = 87/87 (100%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL
Sbjct: 99  RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRSHEA 42
           KMSEGAVRVALHRALKMLASLYRSHEA
Sbjct: 159 KMSEGAVRVALHRALKMLASLYRSHEA 185


>WP_077470469.1 RNA polymerase subunit sigma [Rhizobium sp. P44RR-XXIV] OOE03017.1
           RNA polymerase subunit sigma [Rhizobium sp. P44RR-XXIV]
          Length = 188

 Score =  108 bits (269), Expect = 1e-27
 Identities = 53/84 (63%), Positives = 69/84 (82%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPIDD ++IL  EE+ D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHVSVPIDDVIDILEAEEQTDALERLDVDRMLEQLKDPQKTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK+LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKVLAALYRS 182


>WP_068390184.1 RNA polymerase subunit sigma [Rhizobium sp. AC27/96] OCJ09557.1 RNA
           polymerase subunit sigma [Rhizobium sp. AC27/96]
          Length = 188

 Score =  108 bits (269), Expect = 1e-27
 Identities = 53/84 (63%), Positives = 69/84 (82%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPIDD ++IL  EE+ D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHVSVPIDDVIDILEAEEQTDALERLDVDRMLEQLKDPQKTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK+LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKVLAALYRS 182


>WP_034848196.1 RNA polymerase sigma factor [Inquilinus limosus] KGM30590.1 RNA
           polymerase sigma factor [Inquilinus limosus MP06]
          Length = 185

 Score =  107 bits (268), Expect = 2e-27
 Identities = 54/84 (64%), Positives = 68/84 (80%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPI+D ++ L  E   DGL  R+++RLLSQLK QQR IV+S+S+EG S+R+TA +L
Sbjct: 99  RHVDVPIEDVIDTLEAEATPDGLEQRDVERLLSQLKEQQRDIVRSISVEGGSVRETATRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
            M+EGAVRVALHRALK LA+LYRS
Sbjct: 159 SMTEGAVRVALHRALKALAALYRS 182


>WP_047453662.1 RNA polymerase sigma factor [Agrobacterium rhizogenes]
          Length = 188

 Score =  106 bits (265), Expect = 5e-27
 Identities = 52/84 (61%), Positives = 69/84 (82%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPIDD ++IL  EE+ D L   ++DR+L+QL+  QR IV+S+S+EG S+R+TA +L
Sbjct: 99  RHVSVPIDDVIDILEAEEQTDSLDRLDVDRMLAQLRDPQRTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           +M+EGAVRVALHRALK LA+LYRS
Sbjct: 159 RMTEGAVRVALHRALKALAALYRS 182


>WP_047559486.1 RNA polymerase sigma factor [Rhizobium leguminosarum]
          Length = 188

 Score =  105 bits (263), Expect = 1e-26
 Identities = 51/84 (60%), Positives = 68/84 (80%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH  VPIDD ++IL  E++ D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA QL
Sbjct: 99  RHTSVPIDDVIDILEAEDQTDALDRLDVDRMLEQLKDPQKTIVRSISVEGTSVRETADQL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           +M+EGAVRVALHRALK+LA+LYRS
Sbjct: 159 RMTEGAVRVALHRALKVLAALYRS 182


>WP_042475271.1 RNA polymerase sigma factor [Agrobacterium rhizogenes] GAJ95771.1
           putative RNA polymerase ECF-type sigma factor [Rhizobium
           rhizogenes NBRC 13257]
          Length = 188

 Score =  105 bits (262), Expect = 2e-26
 Identities = 52/87 (59%), Positives = 69/87 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPIDD ++ L  EE+ D L   ++DR+L+QL+  QR IV+S+S+EG S+R+TA +L
Sbjct: 99  RHVKVPIDDVIDSLEAEEQTDALDRLDVDRMLAQLRDPQRTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRSHEA 42
           KM+EGAVRVALHRALK LA+LYRS  +
Sbjct: 159 KMTEGAVRVALHRALKTLAALYRSENS 185


>WP_034510957.1 RNA polymerase sigma factor [Agrobacterium rhizogenes]
          Length = 188

 Score =  105 bits (261), Expect = 2e-26
 Identities = 51/84 (60%), Positives = 68/84 (80%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH  VPIDD ++IL  EE+ D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHTSVPIDDVIDILEAEEQTDALDRLDVDRMLEQLKDPQKTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           +M+EGAVRVALHRALK+LA+LYRS
Sbjct: 159 QMTEGAVRVALHRALKVLAALYRS 182


>WP_037195762.1 MULTISPECIES: RNA polymerase sigma factor [Rhizobium] SCB13313.1
           RNA polymerase sigma-70 factor, ECF subfamily [Rhizobium
           lusitanum]
          Length = 188

 Score =  104 bits (259), Expect = 4e-26
 Identities = 50/84 (59%), Positives = 68/84 (80%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH  VPIDD ++IL  E++ D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHTSVPIDDVIDILEAEDQTDALDRLDVDRMLEQLKDPQKTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           +M+EGAVRVALHRALK+LA+LYRS
Sbjct: 159 RMTEGAVRVALHRALKVLAALYRS 182


>WP_075853418.1 RNA polymerase subunit sigma [Rhizobium hainanense] SCB21757.1 RNA
           polymerase sigma-70 factor, ECF subfamily [Rhizobium
           hainanense]
          Length = 188

 Score =  103 bits (257), Expect = 9e-26
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH+ VPIDD ++ L  EE  D L   ++DR+L QLK  Q+ IV+S+S+EG+S+R+TA +L
Sbjct: 99  RHMSVPIDDVIDFLEAEEYADALDRLDVDRMLEQLKDPQKTIVRSISVEGSSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKALAALYRS 182


>SCB21723.1 RNA polymerase sigma-70 factor, ECF subfamily [Rhizobium
           miluonense]
          Length = 188

 Score =  103 bits (257), Expect = 9e-26
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH+ VPIDD ++ L  EE  D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHMSVPIDDVIDFLEAEEHTDALDRFDVDRMLEQLKDPQKTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKALAALYRS 182


>WP_034481203.1 RNA polymerase sigma factor [Agrobacterium rhizogenes]
          Length = 188

 Score =  103 bits (257), Expect = 9e-26
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH+ VPIDD ++ L  EE  D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHMSVPIDDVIDSLEAEEHTDALDRFDVDRMLEQLKDPQKTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK+LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKVLAALYRS 182


>WP_028751592.1 RNA polymerase sigma factor [Rhizobium leucaenae]
          Length = 188

 Score =  103 bits (257), Expect = 9e-26
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH+ VPIDD ++IL  EE+ D L   +++ +L QLK  QR IV+S+S+EG S+R+TA +L
Sbjct: 99  RHISVPIDDVIDILEAEEQTDALDRLDVNHMLEQLKDPQRTIVRSISVEGASVRETANRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKALAALYRS 182


>ACM28464.1 RNA polymerase sigma factor protein [Agrobacterium radiobacter K84]
          Length = 175

 Score =  103 bits (256), Expect = 9e-26
 Identities = 50/87 (57%), Positives = 69/87 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPIDD ++ L  +E+ D L   ++DR+L+QL+  QR IV+S+S++G S+R+TA +L
Sbjct: 86  RHVNVPIDDVIDSLEADEQTDALDRLDVDRMLAQLRDPQRTIVRSISVDGTSVRETADRL 145

Query: 122 KMSEGAVRVALHRALKMLASLYRSHEA 42
           KM+EGAVRVALHRALK LA+LYRS  +
Sbjct: 146 KMTEGAVRVALHRALKALAALYRSENS 172


>WP_047634087.1 RNA polymerase sigma factor [Rhizobium tropici] OJY77199.1 RNA
           polymerase subunit sigma [Rhizobium sp. 60-20]
          Length = 188

 Score =  103 bits (256), Expect = 1e-25
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH+ VPIDD ++ L  EE  D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHMSVPIDDVIDFLEAEEHADSLDRFDVDRMLEQLKDPQKTIVRSISVEGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKALAALYRS 182


>WP_037219296.1 MULTISPECIES: RNA polymerase sigma factor [Rhizobium/Agrobacterium
           group] OCJ24003.1 RNA polymerase subunit sigma
           [Agrobacterium sp. B131/95]
          Length = 188

 Score =  103 bits (256), Expect = 1e-25
 Identities = 50/87 (57%), Positives = 69/87 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPIDD ++ L  +E+ D L   ++DR+L+QL+  QR IV+S+S++G S+R+TA +L
Sbjct: 99  RHVNVPIDDVIDSLEADEQTDALDRLDVDRMLAQLRDPQRTIVRSISVDGTSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRSHEA 42
           KM+EGAVRVALHRALK LA+LYRS  +
Sbjct: 159 KMTEGAVRVALHRALKALAALYRSENS 185


>WP_004127222.1 RNA polymerase sigma factor protein [Rhizobium freirei] ENN84236.1
           RNA polymerase sigma factor protein [Rhizobium freirei
           PRF 81]
          Length = 188

 Score =  102 bits (255), Expect = 2e-25
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH+ VPIDD ++ L  EE  D L   ++DR+L QLK  Q+ IV+S+S+EG S+R+TA +L
Sbjct: 99  RHMSVPIDDVIDFLEAEEHTDALDRFDVDRMLEQLKDPQKTIVRSISVEGASVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALK LA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKALAALYRS 182


>WP_069611437.1 RNA polymerase subunit sigma [Rhizobium sp. YK2] OEC99654.1 RNA
           polymerase subunit sigma [Rhizobium sp. YK2]
          Length = 188

 Score =  102 bits (254), Expect = 2e-25
 Identities = 50/84 (59%), Positives = 67/84 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RH+ VPIDD ++ L  EE  D     ++DR+L +LK  Q+ IV+S+S+EG+S+R+TA +L
Sbjct: 99  RHMSVPIDDVIDFLEAEEHTDASDRFDVDRMLERLKDPQKTIVRSISVEGSSVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           KM+EGAVRVALHRALKMLA+LYRS
Sbjct: 159 KMTEGAVRVALHRALKMLAALYRS 182


>WP_007698924.1 MULTISPECIES: RNA polymerase sigma factor [Rhizobium/Agrobacterium
           group] EJK80912.1 RNA polymerase sigma factor, sigma-70
           family [Rhizobium sp. AP16] KEA04730.1 RNA polymerase
           sigma factor [Agrobacterium rhizogenes] OCI91430.1 RNA
           polymerase subunit sigma [Agrobacterium sp. 13-626]
           OCJ24894.1 RNA polymerase subunit sigma [Agrobacterium
           sp. B133/95]
          Length = 188

 Score =  102 bits (253), Expect = 3e-25
 Identities = 50/87 (57%), Positives = 69/87 (79%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV VPIDD ++ L  +E+ D L   ++DR+L+QL+  QR IV+S+S++G S+R+TA +L
Sbjct: 99  RHVNVPIDDVIDSLEADEQTDALDRLDVDRMLAQLRDPQRTIVRSISVDGISVRETADRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRSHEA 42
           KM+EGAVRVALHRALK LA+LYRS  +
Sbjct: 159 KMTEGAVRVALHRALKALAALYRSENS 185


>OJY04981.1 RNA polymerase subunit sigma [Rhizobiales bacterium 63-22]
          Length = 187

 Score =  101 bits (251), Expect = 7e-25
 Identities = 52/84 (61%), Positives = 68/84 (80%)
 Frame = -3

Query: 302 RHVIVPIDDFLEILGEEEKDDGLSAREMDRLLSQLKTQQRAIVQSVSIEGNSIRDTAAQL 123
           RHV +PIDD ++ L  E+    L+A ++D LL+QLKTQQR IV+S+S+ G+SIR+TA +L
Sbjct: 99  RHVNIPIDDVVDSLRMEDHTLDLAAHDVDTLLAQLKTQQREIVRSISLSGDSIRETATRL 158

Query: 122 KMSEGAVRVALHRALKMLASLYRS 51
           +M+EGAVRVALHRALK LA LYRS
Sbjct: 159 QMTEGAVRVALHRALKALAVLYRS 182