BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza35_contig00027875
         (340 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

WP_006023174.1 MULTISPECIES: RNA polymerase sigma factor [Rhizob...   151   1e-44
WP_020179912.1 hypothetical protein [Methylopila sp. M107]            101   7e-25
OJU33688.1 RNA polymerase subunit sigma-24 [Alphaproteobacteria ...    97   2e-23
WP_020697972.1 hypothetical protein [Reyranella massiliensis]          97   2e-23
OFX03001.1 RNA polymerase subunit sigma-24 [Alphaproteobacteria ...    97   3e-23
WP_012589894.1 RNA polymerase sigma factor [Methylocella silvest...    97   5e-23
WP_068193683.1 RNA polymerase subunit sigma-24 [Rhodospirillacea...    96   1e-22
WP_019998809.1 hypothetical protein [Aureimonas ureilytica]            94   8e-22
SDG59979.1 RNA polymerase sigma-70 factor, ECF subfamily [Bosea ...    92   2e-21
WP_054142050.1 hypothetical protein [Bosea sp. AAP35] KPF71383.1...    92   4e-21
SDO41166.1 RNA polymerase sigma-70 factor, ECF subfamily [Aureim...    92   4e-21
WP_062112273.1 RNA polymerase subunit sigma-24 [Aureimonas sp. A...    92   4e-21
WP_062011673.1 RNA polymerase subunit sigma-24 [Aureimonas sp. AU4]    91   6e-21
WP_061968594.1 hypothetical protein [Bosea sp. Root670] KRE03202...    91   6e-21
WP_056503219.1 RNA polymerase subunit sigma-24 [Aureimonas sp. L...    91   6e-21
WP_025670124.1 RNA polymerase sigma factor [Rhizobium alamii]          91   9e-21
WP_007824931.1 RNA polymerase sigma factor [Rhizobium sp. CF142]...    91   9e-21
WP_058599234.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Au...    91   1e-20
WP_061979106.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Au...    91   1e-20
WP_055851749.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Au...    91   1e-20

>WP_006023174.1 MULTISPECIES: RNA polymerase sigma factor [Rhizobiales] ABS65521.1
           RNA polymerase, sigma-24 subunit, ECF subfamily
           [Xanthobacter autotrophicus Py2] ABS67903.1 RNA
           polymerase, sigma-24 subunit, ECF subfamily
           [Xanthobacter autotrophicus Py2] EKS34563.1 sigma-70
           family RNA polymerase sigma factor [Afipia broomeae ATCC
           49717]
          Length = 168

 Score =  151 bits (381), Expect = 1e-44
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 2   APNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRAR 181
           APNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRAR
Sbjct: 90  APNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRAR 149

Query: 182 QGLRALLSGSRVTPLRRVK 238
           QGLRALLSGSRVTPLRRVK
Sbjct: 150 QGLRALLSGSRVTPLRRVK 168


>WP_020179912.1 hypothetical protein [Methylopila sp. M107]
          Length = 168

 Score =  101 bits (251), Expect = 7e-25
 Identities = 52/76 (68%), Positives = 60/76 (78%)
 Frame = +2

Query: 11  QTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGL 190
           Q   + M D+L+AL++LPEDHKSILLL+GVEDL+YEE A VL VP+GTVMSRLSR RQ L
Sbjct: 93  QESSVGMRDLLAALDQLPEDHKSILLLVGVEDLTYEEAAGVLDVPIGTVMSRLSRGRQRL 152

Query: 191 RALLSGSRVTPLRRVK 238
           R LL   R T LRRVK
Sbjct: 153 RTLLETGRTTLLRRVK 168


>OJU33688.1 RNA polymerase subunit sigma-24 [Alphaproteobacteria bacterium
           65-37]
          Length = 168

 Score = 97.4 bits (241), Expect = 2e-23
 Identities = 50/72 (69%), Positives = 59/72 (81%)
 Frame = +2

Query: 23  LEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGLRALL 202
           LEM DVL+AL++LPE+ KS+LLL+GVEDLSY+  ARVL VP GTVMSRLSR RQ LR++L
Sbjct: 97  LEMQDVLAALDQLPEEQKSLLLLVGVEDLSYDAAARVLGVPPGTVMSRLSRGRQRLRSIL 156

Query: 203 SGSRVTPLRRVK 238
              R T LRRVK
Sbjct: 157 ETGRATLLRRVK 168


>WP_020697972.1 hypothetical protein [Reyranella massiliensis]
          Length = 168

 Score = 97.4 bits (241), Expect = 2e-23
 Identities = 51/79 (64%), Positives = 61/79 (77%)
 Frame = +2

Query: 2   APNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRAR 181
           A  Q   LEM DVL+AL++LPE+ KS+LLL+GVEDLSY++ ARVL VP GTVMSRLSR R
Sbjct: 90  AATQEAGLEMQDVLAALDQLPEEQKSLLLLVGVEDLSYDDAARVLGVPPGTVMSRLSRGR 149

Query: 182 QGLRALLSGSRVTPLRRVK 238
           Q LR++L   R   LRRVK
Sbjct: 150 QRLRSILETGRARLLRRVK 168


>OFX03001.1 RNA polymerase subunit sigma-24 [Alphaproteobacteria bacterium
           RIFCSPHIGHO2_12_FULL_66_14]
          Length = 168

 Score = 97.1 bits (240), Expect = 3e-23
 Identities = 49/79 (62%), Positives = 62/79 (78%)
 Frame = +2

Query: 2   APNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRAR 181
           A  Q   LE+ DVL+AL++LPE+ KS+LLLIGVED SY++ AR+L +P+GTVMSRLSR R
Sbjct: 90  AAQQEAALEVRDVLAALDQLPEEQKSLLLLIGVEDFSYDDAARILGLPMGTVMSRLSRGR 149

Query: 182 QGLRALLSGSRVTPLRRVK 238
           Q LR++L   R T LRRVK
Sbjct: 150 QKLRSILETGRATLLRRVK 168


>WP_012589894.1 RNA polymerase sigma factor [Methylocella silvestris] ACK49824.1
           RNA polymerase, sigma-24 subunit, ECF subfamily
           [Methylocella silvestris BL2]
          Length = 175

 Score = 96.7 bits (239), Expect = 5e-23
 Identities = 53/80 (66%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
 Frame = +2

Query: 2   APNQTDQ-LEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRA 178
           AP   D+ LE  + L+AL++LPE+ KS+LLLIGVEDLSYEE AR L VPVGTVMSRLSRA
Sbjct: 96  APAGQDRGLEAREALAALDQLPEEQKSLLLLIGVEDLSYEEAARALGVPVGTVMSRLSRA 155

Query: 179 RQGLRALLSGSRVTPLRRVK 238
           RQ LRA+L     T LRR+K
Sbjct: 156 RQKLRAMLETGPTTYLRRIK 175


>WP_068193683.1 RNA polymerase subunit sigma-24 [Rhodospirillaceae bacterium
           CCH5-H10]
          Length = 168

 Score = 95.5 bits (236), Expect = 1e-22
 Identities = 47/76 (61%), Positives = 60/76 (78%)
 Frame = +2

Query: 11  QTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGL 190
           Q   LE+ D+L+ L++LPE+ KS+LLL+GVEDLSY++ A+V+ VP GTVMSRL+R RQ L
Sbjct: 93  QESGLEVQDILTTLDQLPEEQKSLLLLVGVEDLSYDDAAKVMGVPTGTVMSRLARGRQKL 152

Query: 191 RALLSGSRVTPLRRVK 238
           RALL   R T LRRVK
Sbjct: 153 RALLETGRTTLLRRVK 168


>WP_019998809.1 hypothetical protein [Aureimonas ureilytica]
          Length = 171

 Score = 93.6 bits (231), Expect = 8e-22
 Identities = 47/76 (61%), Positives = 59/76 (77%)
 Frame = +2

Query: 11  QTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGL 190
           Q ++ E  DVLS LE L E+H+++LLL+GVEDLSYEETA+V+ +P+GTVMSRLSRARQ L
Sbjct: 96  QMERAEFRDVLSGLEALSEEHRTVLLLVGVEDLSYEETAKVMGLPIGTVMSRLSRARQRL 155

Query: 191 RALLSGSRVTPLRRVK 238
           R+ L       LRRVK
Sbjct: 156 RSYLDHGARPNLRRVK 171


>SDG59979.1 RNA polymerase sigma-70 factor, ECF subfamily [Bosea robiniae]
          Length = 171

 Score = 92.4 bits (228), Expect = 2e-21
 Identities = 46/75 (61%), Positives = 57/75 (76%)
 Frame = +2

Query: 14  TDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGLR 193
           T  L + D LSAL RLP+D +  L L+ +ED++YEE ARV  VP+GTVMSRLSRAR+ LR
Sbjct: 97  TQALHLGDALSALARLPQDQRIALELVAMEDMTYEEVARVTEVPIGTVMSRLSRARERLR 156

Query: 194 ALLSGSRVTPLRRVK 238
           + L GS VTPLRR+K
Sbjct: 157 SELEGSNVTPLRRLK 171


>WP_054142050.1 hypothetical protein [Bosea sp. AAP35] KPF71383.1 hypothetical
           protein IP69_06770 [Bosea sp. AAP35]
          Length = 170

 Score = 91.7 bits (226), Expect = 4e-21
 Identities = 45/77 (58%), Positives = 57/77 (74%)
 Frame = +2

Query: 8   NQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQG 187
           +Q   L + D L+AL RLP+D +  L L+ VED++Y+E ARV  VP+GTVMSRLSRAR+ 
Sbjct: 94  DQNQALHLGDALAALSRLPQDQRIALELVAVEDMTYQEVARVTEVPIGTVMSRLSRARER 153

Query: 188 LRALLSGSRVTPLRRVK 238
           LRA L GS VTP RR+K
Sbjct: 154 LRAELEGSNVTPFRRMK 170


>SDO41166.1 RNA polymerase sigma-70 factor, ECF subfamily [Aureimonas
           jatrophae]
          Length = 171

 Score = 91.7 bits (226), Expect = 4e-21
 Identities = 46/76 (60%), Positives = 58/76 (76%)
 Frame = +2

Query: 11  QTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGL 190
           Q ++ E  DVLS LE L E+H+++LLL+GVEDLSYEETA+++ +P GTVMSRLSRAR+ L
Sbjct: 96  QMERAEFRDVLSGLEALSEEHRTVLLLVGVEDLSYEETAKIVGLPTGTVMSRLSRARERL 155

Query: 191 RALLSGSRVTPLRRVK 238
           RA L       LRRVK
Sbjct: 156 RAYLDQGARPNLRRVK 171


>WP_062112273.1 RNA polymerase subunit sigma-24 [Aureimonas sp. AU40]
          Length = 171

 Score = 91.7 bits (226), Expect = 4e-21
 Identities = 45/77 (58%), Positives = 60/77 (77%)
 Frame = +2

Query: 8   NQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQG 187
           +Q  +  + DVLS L+ L E+H+++LLL+GVED+SY+E ARV+ +PVGTVMSRLSRAR+ 
Sbjct: 95  DQDGRAGLRDVLSGLDALSEEHRTVLLLVGVEDMSYDEAARVIGLPVGTVMSRLSRAREK 154

Query: 188 LRALLSGSRVTPLRRVK 238
           LRA+L      PLRRVK
Sbjct: 155 LRAILETGIRAPLRRVK 171


>WP_062011673.1 RNA polymerase subunit sigma-24 [Aureimonas sp. AU4]
          Length = 171

 Score = 91.3 bits (225), Expect = 6e-21
 Identities = 44/77 (57%), Positives = 60/77 (77%)
 Frame = +2

Query: 8   NQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQG 187
           +Q  +  + DVL+ L+ L E+H+++LLL+GVED+SY+E ARV+ +PVGTVMSRLSRAR+ 
Sbjct: 95  DQDGRAGLRDVLAGLDALSEEHRTVLLLVGVEDMSYDEAARVIGLPVGTVMSRLSRAREK 154

Query: 188 LRALLSGSRVTPLRRVK 238
           LRA+L      PLRRVK
Sbjct: 155 LRAILETGARAPLRRVK 171


>WP_061968594.1 hypothetical protein [Bosea sp. Root670] KRE03202.1 hypothetical
           protein ASE61_11970 [Bosea sp. Root670]
          Length = 171

 Score = 91.3 bits (225), Expect = 6e-21
 Identities = 45/75 (60%), Positives = 57/75 (76%)
 Frame = +2

Query: 14  TDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGLR 193
           T  L + D L+AL RLP+D +  L L+ +ED++YEE ARV  VP+GTVMSRLSRAR+ LR
Sbjct: 97  TQALHLGDTLAALARLPQDQRIALELVAMEDMTYEEVARVTEVPIGTVMSRLSRARERLR 156

Query: 194 ALLSGSRVTPLRRVK 238
           + L GS VTPLRR+K
Sbjct: 157 SELEGSNVTPLRRLK 171


>WP_056503219.1 RNA polymerase subunit sigma-24 [Aureimonas sp. Leaf454] KQT51160.1
           RNA polymerase subunit sigma-24 [Aureimonas sp. Leaf454]
          Length = 171

 Score = 91.3 bits (225), Expect = 6e-21
 Identities = 45/77 (58%), Positives = 60/77 (77%)
 Frame = +2

Query: 8   NQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQG 187
           +Q  +  + DVL+ L+ L E+H+++LLL+GVEDLSY+E ARV+ +PVGTVMSRLSRAR+ 
Sbjct: 95  DQDGRAGLRDVLAGLDALSEEHRTVLLLVGVEDLSYDEAARVIGLPVGTVMSRLSRAREK 154

Query: 188 LRALLSGSRVTPLRRVK 238
           LRA+L      PLRRVK
Sbjct: 155 LRAILETGIRAPLRRVK 171


>WP_025670124.1 RNA polymerase sigma factor [Rhizobium alamii]
          Length = 175

 Score = 90.9 bits (224), Expect = 9e-21
 Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
 Frame = +2

Query: 5   PNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQ 184
           P Q D L   D++ ALE+LPE+ +S+LLL+ VEDLSY +TA VL++P+GTVMSRLSRAR+
Sbjct: 92  PTQEDNLMRRDIIDALEKLPEEQRSVLLLVSVEDLSYSQTAEVLAIPIGTVMSRLSRARE 151

Query: 185 GLRALLSGSRVTP------LRRVK 238
            LR +L  S  T       LRRVK
Sbjct: 152 RLRQILENSGQTTQGPAAHLRRVK 175


>WP_007824931.1 RNA polymerase sigma factor [Rhizobium sp. CF142] EJJ25661.1 RNA
           polymerase sigma factor, sigma-70 family [Rhizobium sp.
           CF142]
          Length = 175

 Score = 90.9 bits (224), Expect = 9e-21
 Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
 Frame = +2

Query: 5   PNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQ 184
           P Q D L   D++ ALE+LPE+ +S+LLL+ VEDLSY +TA VL++P+GTVMSRLSRAR+
Sbjct: 92  PTQEDNLMRRDIIQALEKLPEEQRSVLLLVSVEDLSYSQTAEVLAIPIGTVMSRLSRARE 151

Query: 185 GLRALLSGSRVTP------LRRVK 238
            LR +L  S  T       LRRVK
Sbjct: 152 RLRQILENSGQTTQGPAAHLRRVK 175


>WP_058599234.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Aureimonas]
           KTR07054.1 RNA polymerase subunit sigma-24 [Aureimonas
           ureilytica]
          Length = 171

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 44/77 (57%), Positives = 60/77 (77%)
 Frame = +2

Query: 8   NQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQG 187
           +Q  +  + DVL+ L+ L E+H+++LLL+GVED+SY+E ARV+ +PVGTVMSRLSRAR+ 
Sbjct: 95  DQDGRAGLRDVLAGLDALSEEHRTVLLLVGVEDMSYDEAARVIGLPVGTVMSRLSRAREK 154

Query: 188 LRALLSGSRVTPLRRVK 238
           LRA+L      PLRRVK
Sbjct: 155 LRAILETGIRAPLRRVK 171


>WP_061979106.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Aureimonas]
           ALN75785.1 hypothetical protein M673_23835 (plasmid)
           [Aureimonas sp. AU20]
          Length = 171

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 44/77 (57%), Positives = 60/77 (77%)
 Frame = +2

Query: 8   NQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQG 187
           +Q  +  + DVL+ L+ L E+H+++LLL+GVED+SY+E ARV+ +PVGTVMSRLSRAR+ 
Sbjct: 95  DQDGRAGLRDVLAGLDALSEEHRTVLLLVGVEDMSYDEAARVIGLPVGTVMSRLSRAREK 154

Query: 188 LRALLSGSRVTPLRRVK 238
           LRA+L      PLRRVK
Sbjct: 155 LRAILETGIRAPLRRVK 171


>WP_055851749.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Aurantimonadaceae]
           KQT83134.1 RNA polymerase subunit sigma-24 [Aurantimonas
           sp. Leaf443] SDO18029.1 RNA polymerase sigma-70 factor,
           ECF subfamily [Aureimonas jatrophae] SFE92854.1 RNA
           polymerase sigma-70 factor, ECF subfamily [Aureimonas
           phyllosphaerae]
          Length = 171

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 44/77 (57%), Positives = 60/77 (77%)
 Frame = +2

Query: 8   NQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQG 187
           +Q  +  + DVL+ L+ L E+H+++LLL+GVED+SY+E ARV+ +PVGTVMSRLSRAR+ 
Sbjct: 95  DQDGRAGLRDVLAGLDALSEEHRTVLLLVGVEDMSYDEAARVIGLPVGTVMSRLSRAREK 154

Query: 188 LRALLSGSRVTPLRRVK 238
           LRA+L      PLRRVK
Sbjct: 155 LRAILETGIRAPLRRVK 171