BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza35_contig00021941
         (1814 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GAU15708.1 hypothetical protein TSUD_307180 [Trifolium subterran...   553   e-179
GAU38852.1 hypothetical protein TSUD_154140 [Trifolium subterran...   538   e-172
GAU46782.1 hypothetical protein TSUD_351810 [Trifolium subterran...   538   e-172
GAU47513.1 hypothetical protein TSUD_138850 [Trifolium subterran...   515   e-164
KYP34298.1 Retrovirus-related Pol polyprotein from transposon TN...   500   e-163
KYP37906.1 Retrovirus-related Pol polyprotein from transposon TN...   502   e-162
GAU31769.1 hypothetical protein TSUD_22150 [Trifolium subterraneum]   505   e-161
KHN05285.1 Retrovirus-related Pol polyprotein from transposon TN...   503   e-160
KHN01991.1 Retrovirus-related Pol polyprotein from transposon TN...   498   e-159
KYP36109.1 Retrovirus-related Pol polyprotein from transposon TN...   486   e-156
KYP68601.1 Retrovirus-related Pol polyprotein from transposon TN...   468   e-156
KYP64431.1 Retrovirus-related Pol polyprotein from transposon TN...   476   e-156
KYP70921.1 Retrovirus-related Pol polyprotein from transposon TN...   489   e-155
KYP42564.1 Retrovirus-related Pol polyprotein from transposon TN...   490   e-155
KYP65734.1 Retrovirus-related Pol polyprotein from transposon TN...   476   e-153
GAU40997.1 hypothetical protein TSUD_92220 [Trifolium subterraneum]   473   e-151
KYP70315.1 Retrovirus-related Pol polyprotein from transposon TN...   458   e-150
KYP43110.1 Retrovirus-related Pol polyprotein from transposon TN...   474   e-149
KYP68426.1 Retrovirus-related Pol polyprotein from transposon TN...   474   e-149
KYP31387.1 Retrovirus-related Pol polyprotein from transposon TN...   446   e-142

>GAU15708.1 hypothetical protein TSUD_307180 [Trifolium subterraneum]
          Length = 1433

 Score =  553 bits (1426), Expect = e-179
 Identities = 288/615 (46%), Positives = 386/615 (62%), Gaps = 12/615 (1%)
 Frame = +2

Query: 5    ITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRKIGSGKLKHGL 184
            IT  + L + LYLP F  NL+S+ ++T     +  F    C I +  QR IGSGKL +GL
Sbjct: 409  ITDTIALTNVLYLPHFTYNLLSVSRVTHQLACTFTFAFNMCTIHNSQQRMIGSGKLLNGL 468

Query: 185  YHLDYGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKS 364
            Y+L+        +V  V  TV + ++IP SA+WHFRFGHAS ++++++ K++P+I +NK 
Sbjct: 469  YYLEGTNASTHSLVKPVTGTVCTVFSIPQSALWHFRFGHASNSRLEIMHKSYPSISINKD 528

Query: 365  LVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYT 544
             VCD+CHLA+Q++L + +S +++  CF+L+H+D+WGP S  ++HG+++FLTIVDD SR+T
Sbjct: 529  CVCDVCHLAKQKKLSYSLSTSKSTKCFELLHMDIWGPYSTATLHGHKYFLTIVDDFSRFT 588

Query: 545  WTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVE 724
            W +LLKGK EV   V  F ++VENQF   VK +RSDNG EF+LS     + I+HQ SCV 
Sbjct: 589  WVILLKGKNEVASHVQHFIHLVENQFESTVKIVRSDNGPEFSLSSFYASKRIVHQTSCVY 648

Query: 725  TLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQL 904
            T +QN RVERKHQ +L++ARAL++Q+ LP   W YA+LH+V+L+NRMPSV +    PY  
Sbjct: 649  TPQQNGRVERKHQCILAIARALLIQSHLPAKYWGYAVLHSVYLMNRMPSVAIEGGLPYHK 708

Query: 905  LHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREII 1084
            LH  LP ++ L++FGCLCY ST    R K D RARKC FLG+K   KG V  D+ S EI+
Sbjct: 709  LHNRLPDISMLKIFGCLCYVSTTDVHRLKLDHRARKCAFLGFKSGTKGFVALDLHSYEIV 768

Query: 1085 VSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQ 1264
            VSRNV F E IFPY   +   +     +W+                        L+ + +
Sbjct: 769  VSRNVQFEELIFPYPSQTQSQT-----KWE--------------FFIPPIDPIPLTNDTE 809

Query: 1265 PSS-FPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXN-----------LRHSTRPHKPP 1408
            P++  P   N  +T    P+D+    +          +           LR STR  K P
Sbjct: 810  PTTDQPTTSNDTSTISIEPVDSISSNESITPPAPPDASPQYSPTTEPPPLRKSTRITKLP 869

Query: 1409 SHLNDYICNHISSINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWV 1588
             HL DY CN+I  ++  +YPI  Y S+  LS    +YT+SL    EPSS+ EA KH  WV
Sbjct: 870  PHLLDYECNNI--VHSTKYPISKYTSHNHLSSKQLSYTLSLLTETEPSSYSEACKHDHWV 927

Query: 1589 EAMQQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTE 1768
            +AM  EL ALE+N+TW IV  P    PIG KWVYKVKRKADGS+ERYKARLVAKGY Q E
Sbjct: 928  KAMNAELQALEQNKTWSIVSLPVGAKPIGSKWVYKVKRKADGSIERYKARLVAKGYNQVE 987

Query: 1769 GIDYFDTFSPVAKMT 1813
            GIDYF+TFSPVAKMT
Sbjct: 988  GIDYFETFSPVAKMT 1002


>GAU38852.1 hypothetical protein TSUD_154140 [Trifolium subterraneum]
          Length = 1494

 Score =  538 bits (1386), Expect = e-172
 Identities = 286/607 (47%), Positives = 388/607 (63%), Gaps = 4/607 (0%)
 Frame = +2

Query: 5    ITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRKIGSGKLKHGL 184
            IT  + L+  LY+P F+ NLIS+ ++++       F +  C IQ+ LQR IGSG++ +GL
Sbjct: 433  ITPTITLKHVLYMPHFSFNLISVSRVSKDLDCVFAFTDNLCFIQNSLQRMIGSGRMLNGL 492

Query: 185  YHLDYGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNK- 361
            Y+L+  G    P +  +     +S  IPN+A+WHFRFGH S  ++++L K +P I VNK 
Sbjct: 493  YYLE--GTHSQPNL--LTGKQCNSLAIPNNALWHFRFGHTSQNRLEILQKLYPTIEVNKV 548

Query: 362  SLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRY 541
               CD+CHLA+QR+LP+V S++RA    +L+H+D+WGP S  + HG+++FLTIVDD SR+
Sbjct: 549  DFCCDVCHLAKQRKLPYVTSSSRASVILELLHMDIWGPFSTSTTHGHKYFLTIVDDFSRF 608

Query: 542  TWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEF-NLSDVCRERGIIHQLSC 718
            TW VLLKGK+EV  KV EF N  EN F  KVK +RSDNG EF +LS     +GI HQ SC
Sbjct: 609  TWIVLLKGKYEVASKVQEFINFAENHFCHKVKFLRSDNGQEFLSLSKFYISKGIQHQTSC 668

Query: 719  VETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPY 898
            V T +QN RVERKHQ +L++ARALM Q+ LP   W YA+L +V ++NR+PS  L    P+
Sbjct: 669  VYTPQQNGRVERKHQCILNIARALMTQSHLPAKYWGYAVLQSVFIMNRVPSNALKGQIPF 728

Query: 899  QLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSRE 1078
              L+G LP L++L+VFG LC+ ST+ + R K D RARKCV+LG K  VKG V  D+ + E
Sbjct: 729  VALYGKLPELSDLKVFGSLCFVSTHDNQRSKLDPRARKCVYLGIKPGVKGYVALDLHNYE 788

Query: 1079 IIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLN 1258
            IIVSRNVVF E IFPY  ++S+ +  Y++                            + N
Sbjct: 789  IIVSRNVVFEETIFPYPVSNSKTAWEYVE---------------PTPNTHPSTEPTKTRN 833

Query: 1259 GQPSSFPNPPNTPATSQDTPID--TNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYIC 1432
             Q ++     N    S D P+D  ++              + R STR  + P HL DY C
Sbjct: 834  SQETTDDLSTNHDHDSIDLPLDQPSDRTTTSTHDQKFTNSSPRRSTRIKQTPLHLMDYQC 893

Query: 1433 NHISSINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELT 1612
            N I+   P  YPI +++S+ +LS+ +  + +SL A  EP+++ EASKH CWV+AM+ ELT
Sbjct: 894  NAITHKTP--YPISSFISHNNLSKSYSTFCLSLLADTEPTTYAEASKHECWVKAMKNELT 951

Query: 1613 ALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTF 1792
            AL  N+TWII D P  V PIG KWVYK+KRKADG+++RYKARLVAKGY Q EG+D+  TF
Sbjct: 952  ALANNKTWIITDLPEGVKPIGSKWVYKIKRKADGTIDRYKARLVAKGYNQIEGVDFSQTF 1011

Query: 1793 SPVAKMT 1813
            SPVAKMT
Sbjct: 1012 SPVAKMT 1018


>GAU46782.1 hypothetical protein TSUD_351810 [Trifolium subterraneum]
          Length = 1512

 Score =  538 bits (1385), Expect = e-172
 Identities = 279/634 (44%), Positives = 392/634 (61%), Gaps = 34/634 (5%)
 Frame = +2

Query: 14   DLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRK-IGSGKLKHGLYH 190
            + ++++ L +PEF++NL+S+P+LT  S F V F N +C+IQ+    K IGSG+L  GLY+
Sbjct: 449  NFIIDNVLLVPEFSLNLLSVPRLTHNSKFVVLFDNLDCLIQEKKSLKMIGSGELIEGLYY 508

Query: 191  LDYGGGKVVPVVSHVNATVD--SSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKS 364
            L     K  PV ++ + +++  S+  IP  A+WHFR GH S A++ ++  +FP + +++ 
Sbjct: 509  LT---NKPQPVSANSSISINPSSNIHIPKQALWHFRLGHLSHARLLLMQSSFPFVTIDEH 565

Query: 365  LVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYT 544
             VCDICHLAR ++L + +S N+A +C +L+H D+WGP S+ SIHG+R+FLT +DD SR+T
Sbjct: 566  AVCDICHLARHKKLTYKLSVNKASHCGELIHFDIWGPTSIHSIHGHRYFLTAIDDFSRFT 625

Query: 545  WTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVE 724
            W +LLK K EV   VI+F  M+E QF+  V+ IR+DNG EF + +    +GI HQ SCVE
Sbjct: 626  WVILLKSKAEVSSLVIQFITMIEKQFNTIVRTIRTDNGPEFLIPEFYASKGINHQTSCVE 685

Query: 725  TLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQL 904
            T +QN RVERKHQHLL+V R+L+ Q+ LPK  WSYA+ HA ++INR+ + +L + SPY L
Sbjct: 686  TPQQNGRVERKHQHLLNVGRSLLFQSKLPKKFWSYAVSHATYIINRVCTPLLQNKSPYHL 745

Query: 905  LHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREII 1084
            L+   P L  L+VFG LCY ST  + R K D RARKC+FLGYK  +KG + YD+ +  I 
Sbjct: 746  LYNKPPDLEQLKVFGSLCYASTLQNQRTKLDPRARKCIFLGYKSGMKGVILYDIHNHNIF 805

Query: 1085 VSRNVVFYENIFPY-----------------------KCNSSRGSVAYLK---RWDTGXX 1186
            VSRN+  Y++I PY                         NS   S+ +      ++T   
Sbjct: 806  VSRNITHYDHILPYASSSYSIPWSYHSPNIDPFITPPTSNSGSSSIPHSTDHIHFNTPMC 865

Query: 1187 XXXXXXXXXXXXXXXXXXXXLSLNGQPSSFPNPPNTPATSQDTPIDTNHLPDXXXXXXXX 1366
                                ++ N   SS P+ P+ P  +  +P+ T +LP         
Sbjct: 866  DQENPSQPSSQTPSDLFVPQVTDNDIVSSQPSIPHQPHDTH-SPLPTTNLPS---PSHNS 921

Query: 1367 XXNLRHSTRPHKPPSHLNDYICNHISSINPPR-----YPIHAYVSYASLSQPHRAYTMSL 1531
                R STR    P HL+DY+CN     +PP      YPI ++ SY+++S   R Y +S+
Sbjct: 922  IPQTRQSTRMSVKPKHLSDYVCNLSVDSSPPSSPGILYPISSFHSYSNISSKFRNYALSI 981

Query: 1532 DAVPEPSSFCEASKHTCWVEAMQQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKAD 1711
             A  EP  + EAS+  CWV+AM  E+ AL+ N+TW  V  PA++ PIGCKWVYKVK KAD
Sbjct: 982  TASVEPRDYKEASQQQCWVDAMNNEIQALQHNKTWCYVTPPAHIKPIGCKWVYKVKHKAD 1041

Query: 1712 GSLERYKARLVAKGYTQTEGIDYFDTFSPVAKMT 1813
            GS+ERYKARLVAKGY Q EG+D+FDTFSPVAK+T
Sbjct: 1042 GSVERYKARLVAKGYNQVEGLDFFDTFSPVAKIT 1075


>GAU47513.1 hypothetical protein TSUD_138850 [Trifolium subterraneum]
          Length = 1469

 Score =  515 bits (1326), Expect = e-164
 Identities = 281/644 (43%), Positives = 379/644 (58%), Gaps = 40/644 (6%)
 Frame = +2

Query: 2    RITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPL-QRKIGSGKLKH 178
            + +  LV+ + L +P F++NLIS+ +L +  ++ V F +  C IQD L +R IG   L  
Sbjct: 411  KFSDSLVITNVLCIPNFSVNLISVSQLCKIQNYKVHFTDSKCTIQDQLTKRMIGFADLIE 470

Query: 179  GLYHLDYGGGKVVPVVSHVNATVDSSYT-IPNSAIWHFRFGHASLAKIDMLSKNFPAIHV 355
            GLY+L     +V     H ++   + +T IP+ A+WHFR GH S  K+ +L   FP I V
Sbjct: 471  GLYYLTLTSKEV-----HAHSIDGTQHTNIPDQALWHFRLGHTSNTKMSLLQSVFPFITV 525

Query: 356  NKSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHS 535
            +   VCDICHLA+ ++L + VS N+A   ++L+H D+WGP +  SIH + +FLT VDD+S
Sbjct: 526  DNKGVCDICHLAKHKKLYYKVSMNKATVPYELIHFDIWGPIASKSIHNHAYFLTAVDDYS 585

Query: 536  RYTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLS 715
            R+TW  L+K K E +  VI F  ++E Q + KVK +R+ NG EF +      +GI+HQ S
Sbjct: 586  RFTWVTLMKHKSEARQHVINFIKLIETQHNSKVKIVRTYNGVEFLMPQFYASKGIVHQTS 645

Query: 716  CVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSP 895
            CVET EQN RVERKHQHLL+V RAL+ QA LPK  WSYA+ HA ++INR+PSVVL++ SP
Sbjct: 646  CVETPEQNGRVERKHQHLLNVGRALLFQAHLPKMFWSYAVQHATYIINRVPSVVLSNKSP 705

Query: 896  YQLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSR 1075
            Y+LLH VLP + +L+VFG L Y ST  S R K   RARKC+FLGYK  VKG + YD+ S+
Sbjct: 706  YELLHNVLPDIKDLKVFGSLAYASTLQSHRTKLTPRARKCIFLGYKQGVKGTILYDLHSK 765

Query: 1076 EIIVSRNVVFYENIFPYKCNSSRG-------------------SVAYLKRWDTGXXXXXX 1198
            +I +SRNV  +++I PYK  S                      S    +  DT       
Sbjct: 766  DIFISRNVTHHDHILPYKPQSDHSLWHFHTSSEPTNVPETIHTSFNSDQPVDTSTPHEHV 825

Query: 1199 XXXXXXXXXXXXXXXXLSLN-GQPSSFPNPPNTPATSQDTPID-----------TNHLPD 1342
                            +  +  +PS   +  NT  T+ +  ++           +NHL  
Sbjct: 826  TVIEPTQNLSNDVQLVVPSDIAEPSHISDTCNTQCTNHNDALNQPAQPLSPLLISNHLDQ 885

Query: 1343 XXXXXXXXXXNLRH-STRPHKPPSHLNDYICNH------ISSINPPRYPIHAYVSYASLS 1501
                      N  H STR    PS+L+DY+CN         S +   YPI  Y S  +LS
Sbjct: 886  TPALPTSSDSNPTHRSTRLKHAPSYLSDYVCNQSTTSPGTQSSSGSLYPISDYHSLKNLS 945

Query: 1502 QPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTALEKNQTWIIVDKPANVIPIGCK 1681
              H A+T+SL    EP S+ EA K  CW +AM  EL AL K  TW+IVD P+++ PIG K
Sbjct: 946  SIHHAFTVSLTHNTEPKSYLEACKFECWQKAMDDELEALTKTGTWVIVDLPSHIKPIGSK 1005

Query: 1682 WVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSPVAKMT 1813
            WVYKVK KADG++ERYKARLVAKGY Q EG+D+FDTFSPVAK+T
Sbjct: 1006 WVYKVKYKADGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLT 1049


>KYP34298.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  500 bits (1287), Expect = e-163
 Identities = 268/608 (44%), Positives = 370/608 (60%), Gaps = 8/608 (1%)
 Frame = +2

Query: 14   DLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRK-IGSGKLKHGLYH 190
            D  L D LY+PEFN NL+S+ +L R     + F  + C IQD    K IG+ K   GLY 
Sbjct: 8    DFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAKHNMGLYV 67

Query: 191  LDYGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKSL- 367
            LD+      P V     +V++ ++  N  +WH R GH +  K+  +  NFP I   K+  
Sbjct: 68   LDWK-----PKVCLYLHSVNNFHSYDND-LWHIRLGHLAHEKLQAMKSNFPFIDCKKNKD 121

Query: 368  VCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTW 547
             C++C+LA+QR+LPF  S  +A+  FDL+H+D+WGP +  SI G++FFLTIVDD SR+TW
Sbjct: 122  PCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHKFFLTIVDDKSRHTW 181

Query: 548  TVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVET 727
               +K K EV   +  F  ++ENQF +KVK +RSDNG EF L +   E+GI+HQ SCVET
Sbjct: 182  VYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFLLKNFYHEKGILHQTSCVET 241

Query: 728  LEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLL 907
             +QN  VERKHQH+++VARAL++Q++LPK  W YA+ HAV LINR PS  L +  PY+++
Sbjct: 242  PQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEII 301

Query: 908  HGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIV 1087
            +  LP L  ++VFGCL Y +T    R KFD R R+CVFLG+K  VKG++ YD+ SRE  +
Sbjct: 302  YNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFL 361

Query: 1088 SRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQP 1267
            SR+V ++E+IFP+   S                                    L L    
Sbjct: 362  SRHVEYFEHIFPFLPTS-----------------------------------PLDLTQTI 386

Query: 1268 SSFPNPPNTPATSQDTPIDTNHLP-DXXXXXXXXXXNLRHSTRPHKPPSHLNDY----IC 1432
            S   + P  P  +  TP+ TN  P             +R STRP K PS+L+DY    + 
Sbjct: 387  SLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPPFVRKSTRPRKLPSYLHDYHHTLLT 446

Query: 1433 NHIS-SINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQEL 1609
             H S +I+ P Y IH ++SY++LS   +A+++S+ ++ EP+S+ EA +   W  A+Q EL
Sbjct: 447  THNSPTISQPLYSIHNHISYSNLSPSQKAFSLSISSIKEPNSYVEAIQDESWKTAIQTEL 506

Query: 1610 TALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDT 1789
            TALEKN TWI+   P N   +GCKWV+K+K  +DG++ER+KARLVAKGYTQTE +DY DT
Sbjct: 507  TALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTETLDYLDT 566

Query: 1790 FSPVAKMT 1813
            FSPV KMT
Sbjct: 567  FSPVVKMT 574


>KYP37906.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1097

 Score =  502 bits (1293), Expect = e-162
 Identities = 268/608 (44%), Positives = 371/608 (61%), Gaps = 8/608 (1%)
 Frame = +2

Query: 14   DLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRK-IGSGKLKHGLYH 190
            D  L D LY+PEFN NL+S+ +L R     + F  + C IQD    K IG+ K   GLY 
Sbjct: 164  DFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAKHNMGLYV 223

Query: 191  LDYGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKSL- 367
            LD+      P V     ++++ ++  N  +WH R GH +  K+  +  NFP I   K+  
Sbjct: 224  LDWK-----PKVCLYLHSINNFHSYDND-LWHIRLGHLAHEKLQAMKSNFPFIDCKKNKD 277

Query: 368  VCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTW 547
             C++C+LA+QR+LPF  S  +A+  FDL+H+D+WGP +  SI G+RFFLTIVDD SR+TW
Sbjct: 278  PCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHRFFLTIVDDKSRHTW 337

Query: 548  TVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVET 727
               +K K EV   +  F  ++ENQF +KVK +RSDNG EF L +   E+GI+HQ SCVET
Sbjct: 338  VYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFLLKNFYHEKGILHQTSCVET 397

Query: 728  LEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLL 907
             +QN  VERKHQH+++VARAL++Q++LPK  W YA+ HAV LINR PS  L +  PY+++
Sbjct: 398  PQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEII 457

Query: 908  HGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIV 1087
            +  LP L  ++VFGCL Y +T    R KFD R R+CVFLG+K  VKG++ YD+ SRE  +
Sbjct: 458  YNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFL 517

Query: 1088 SRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQP 1267
            SR+V ++E+IFP+   S                                    L L    
Sbjct: 518  SRHVEYFEHIFPFLPTS-----------------------------------PLDLTQTI 542

Query: 1268 SSFPNPPNTPATSQDTPIDTNHLP-DXXXXXXXXXXNLRHSTRPHKPPSHLNDY----IC 1432
            S   + P  P  +  TP+ TN  P             ++ STRP K PS+L+DY    + 
Sbjct: 543  SLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPPFVQKSTRPRKLPSYLHDYHHTLLT 602

Query: 1433 NHIS-SINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQEL 1609
             H S +I+ P Y IH ++SY++LS   +A+++S+ ++ EP+S+ EA +   W  A+Q EL
Sbjct: 603  THNSPTISQPLYSIHNHISYSNLSPSQKAFSLSISSIKEPNSYVEAIQDESWKTAIQTEL 662

Query: 1610 TALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDT 1789
            TALEKN TWI+   P N   +GCKWV+K+K  +DG++ER+KARLVAKGYTQTEG+DY DT
Sbjct: 663  TALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTEGLDYLDT 722

Query: 1790 FSPVAKMT 1813
            FSPV KMT
Sbjct: 723  FSPVVKMT 730


>GAU31769.1 hypothetical protein TSUD_22150 [Trifolium subterraneum]
          Length = 1372

 Score =  505 bits (1301), Expect = e-161
 Identities = 278/644 (43%), Positives = 379/644 (58%), Gaps = 40/644 (6%)
 Frame = +2

Query: 2    RITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPL-QRKIGSGKLKH 178
            + +  LV+ + L +P F++NLIS+ +L +  ++ V F +  C IQD L +R IGS  L  
Sbjct: 370  KFSDSLVITNVLCIPNFSVNLISVSQLCKIQNYKVHFTDSKCTIQDQLTKRMIGSADLIE 429

Query: 179  GLYHLDYGGGKVVPVVSHVNATVDSSYT-IPNSAIWHFRFGHASLAKIDMLSKNFPAIHV 355
            GLY+L     +V     H +    + +T IP+ A+W FR GH S  K+ +L   FP I V
Sbjct: 430  GLYYLTLTSEEV-----HAHNIDGTQHTNIPDQALWLFRLGHTSNTKMSLLQSVFPFIAV 484

Query: 356  NKSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHS 535
            +   VCDICHLA+ ++L + VS N+A   ++L+H D+WGP +  SIH + +FLT+VDD+S
Sbjct: 485  DNKGVCDICHLAKHKKLYYKVSMNKAYVPYELIHFDIWGPIASKSIHNHAYFLTVVDDYS 544

Query: 536  RYTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLS 715
            R+TW  L+K K E +  VI F  ++E Q + KVK +R+DNG EF ++     +GIIHQ S
Sbjct: 545  RFTWVTLMKHKTEARQHVINFIKLIETQHNSKVKIVRTDNGVEFLITQFYASKGIIHQTS 604

Query: 716  CVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSP 895
            CVET EQN RVERKHQHLL+V RAL+ QA LPK+ WSY + HA ++INR+P VVL++ SP
Sbjct: 605  CVETPEQNGRVERKHQHLLNVGRALLFQAHLPKFFWSYDVQHATYIINRVPFVVLSNKSP 664

Query: 896  YQLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSR 1075
            Y+LLH VLP + +L+VFG L Y ST  S R K   RARKC+FLGYK  VKG + YD+ ++
Sbjct: 665  YELLHNVLPNIKDLKVFGSLAYASTLQSHRTKLAPRARKCIFLGYKQGVKGTILYDLHNK 724

Query: 1076 EIIVSRNVVFYENIFPYK-----------CNSSRGSVAYLKRWDTGXXXXXXXXXXXXXX 1222
            EI +SRNV  +++I  YK            +S   +V                       
Sbjct: 725  EIFISRNVTHHDHILSYKPQSDHLFWHFHTSSEPTNVPETTHTSFNSGQPVNISTPHEHV 784

Query: 1223 XXXXXXXXLSLNGQ---------PSSFPNPPNTPATSQDTPID-----------TNHLPD 1342
                    LS + Q         PS  P+  +T  T+ +  ++           ++HL  
Sbjct: 785  TVIEPPQNLSNDVQPIEPSDITEPSHMPDICDTQCTNHNDTLNQPAQPLSPLPISDHLDQ 844

Query: 1343 XXXXXXXXXXNLRH-STRPHKPPSHLNDYICNH------ISSINPPRYPIHAYVSYASLS 1501
                      N  H STR +  PS+L+DY+ N         S +   YPI  Y S  +LS
Sbjct: 845  SSALPTSPDSNPTHRSTRLNHAPSYLSDYVSNQSTTSPGTKSSSGSLYPISDYHSLKNLS 904

Query: 1502 QPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTALEKNQTWIIVDKPANVIPIGCK 1681
              H A+T+SL    EP S+ EA K  CW +AM  EL AL K  TW+IVD P+++ PIG K
Sbjct: 905  SIHHAFTVSLTHNTEPKSYLEACKFECWQKAMDDELEALTKTGTWVIVDLPSHIKPIGSK 964

Query: 1682 WVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSPVAKMT 1813
            WVYKVK KADG++ERYK RLVAKGY Q EG+D+FDTFSPVAK+T
Sbjct: 965  WVYKVKYKADGTIERYKVRLVAKGYNQVEGLDFFDTFSPVAKLT 1008


>KHN05285.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1346

 Score =  503 bits (1296), Expect = e-160
 Identities = 266/612 (43%), Positives = 374/612 (61%), Gaps = 15/612 (2%)
 Frame = +2

Query: 23   LEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRK-IGSGKLKHGLYHLDY 199
            + + LY+P F +NLIS+ +L   + +++ F +  C IQ+    K IG G+ + GLY+L  
Sbjct: 347  ITNVLYVPTFTVNLISVSQLCHHTPYTLNFTDTICSIQEQKSLKMIGLGESRDGLYYLTQ 406

Query: 200  GGGKVVPVVSHVNATVDSSYT--IPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKSLVC 373
               +      ++++   S+    IP +AIWHFR GH S ++I +L   FP I  + S VC
Sbjct: 407  TNKECASSNYNISSIFSSANNVHIPENAIWHFRLGHLSSSRIALLHSQFPFIVNDSSSVC 466

Query: 374  DICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTWTV 553
            DICH A+ R+LPFV S ++A  CFDL+H D+WGP S+ S+H + +FLT VDDHSRYTW  
Sbjct: 467  DICHFAKHRKLPFVHSYHKAIKCFDLIHFDIWGPISIKSVHNHAYFLTAVDDHSRYTWIT 526

Query: 554  LLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLE 733
            L+K K E +  V  F + ++ Q++  VK+IR+DNG EF + D    +GI+HQ SCV++ +
Sbjct: 527  LMKNKSEARLHVQNFIHFIKTQYNHSVKSIRTDNGPEFLMPDFYASKGILHQTSCVDSPQ 586

Query: 734  QNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHG 913
            QN RVERKHQ +L++ RAL++Q++LPK  W YA+ HAV+++NR+P+  L + SPY LL+ 
Sbjct: 587  QNGRVERKHQQILNIGRALLVQSNLPKSFWCYAVSHAVYIMNRVPAPNLQNKSPYTLLYN 646

Query: 914  VLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIVSR 1093
              P  + L+VFG L + ST  S R K D RARKCVFLGYK  VKG V  D+ +  I +SR
Sbjct: 647  TAPDFDTLKVFGSLVFASTLQSHRTKLDLRARKCVFLGYKSGVKGVVLLDLLNNSIFLSR 706

Query: 1094 NVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQPSS 1273
            +V  +E+IFPY+ +S +    Y     T                       +SL+     
Sbjct: 707  DVTHHEHIFPYQSSSPKTPWEYHSISPT------------PNDSDITLDSDISLDINAEQ 754

Query: 1274 FPNPPN---TPATSQDTPI-DTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYICNH- 1438
             P+PP+   +P  S DT I DT+                    R  + P HL+DY+C++ 
Sbjct: 755  SPSPPHSSLSPNISNDTVISDTSTSTPPPKDHNDSPLLHSKPIRQRRAPLHLSDYVCHNT 814

Query: 1439 -------ISSINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAM 1597
                   ++S    +YP+ ++ S   LS  H+A++MS+    EP S+ EASKH  WV AM
Sbjct: 815  SPTSHESLTSGTKSKYPLSSFHSLTLLSPSHKAFSMSITHCTEPQSYEEASKHEHWVTAM 874

Query: 1598 QQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGID 1777
            ++EL AL KN TW IV+ P +  PIGCKWVYKVK KA+G +ERYKARLVAKGY Q EGID
Sbjct: 875  KEELNALAKNCTWKIVELPPHTKPIGCKWVYKVKHKANGQIERYKARLVAKGYNQVEGID 934

Query: 1778 YFDTFSPVAKMT 1813
            YF+TFSPVAK+T
Sbjct: 935  YFETFSPVAKIT 946


>KHN01991.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1311

 Score =  498 bits (1282), Expect = e-159
 Identities = 260/616 (42%), Positives = 368/616 (59%), Gaps = 13/616 (2%)
 Frame = +2

Query: 5    ITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQR-KIGSGKLKHG 181
            ++  + L + LY+P F  NLISI KL   +H ++ F + +C++QD   R KIG  + KHG
Sbjct: 314  LSKSITLFNVLYMPAFTFNLISISKLVSSTHCALIFSSTSCMLQDASTRTKIGIVEEKHG 373

Query: 182  LYHLDYGGGKVVPVVSHVNATVDSSYTIPNSAI-----WHFRFGHASLAKIDMLSKNFPA 346
            LYHL         +   VN  + S+   P   I     WHFR GH S  ++  +  ++P 
Sbjct: 374  LYHL---------IPDQVNKVICSTIIHPKCKIIPIDLWHFRMGHLSTERLQCMKPHYPI 424

Query: 347  IHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVD 526
            +  +K+ VC+ CH A+ ++LPF  S + A + F L+H+D+WGPCS PS+HG+++FLTIVD
Sbjct: 425  LRNDKTFVCNTCHYAKHKKLPFSSSTSHASHIFYLLHVDIWGPCSKPSMHGHKYFLTIVD 484

Query: 527  DHSRYTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIH 706
            DHSR+TW  L+  K E +  ++ F   VE Q+++K+K IRSDNG EF +      +GI+H
Sbjct: 485  DHSRFTWVHLMHTKAETRDIIVNFIASVETQYNKKIKKIRSDNGYEFLMPSFYASKGIMH 544

Query: 707  QLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNS 886
            Q +CVET EQN   ERKHQHLL+V RAL+ QA+LP   W YA+LHA +L+N +P+  L++
Sbjct: 545  QTTCVETPEQNGIAERKHQHLLNVTRALLFQANLPSNFWCYALLHATYLVNCIPTPFLHN 604

Query: 887  SSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDV 1066
             SPY+ LHG LP +++LRVFGCLCY ST  + R K D RA  C+F+G+K   KG + Y++
Sbjct: 605  VSPYEKLHGHLPEISHLRVFGCLCYASTLKANRKKLDPRAHPCIFIGFKASTKGYLVYNL 664

Query: 1067 RSREIIVSRNVVFYENIF---PYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXX 1237
                II SRNVVFYE+ F   P   +S   S   L +                       
Sbjct: 665  HLHSIITSRNVVFYEDHFSQIPETQSSHPESSTILPK----------------------- 701

Query: 1238 XXXLSLNGQPSSFPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHL 1417
               +S +      P  P    T+  TP+      D            R STRP   P++L
Sbjct: 702  SFNISPHDPIIEKPPQPVIQETTDHTPLQLTS-TDESAFSQRTKHEPRRSTRPKHAPTYL 760

Query: 1418 NDY---ICNHISSIN-PPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCW 1585
             DY   + +H + ++   RYP+ + +SY+ LS  H+ + MS+ +  EPSS+ EAS++ CW
Sbjct: 761  QDYHHSLSSHDTKVSTSSRYPLSSVLSYSRLSHTHKHFVMSISSTVEPSSYAEASQYDCW 820

Query: 1586 VEAMQQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQT 1765
            ++AM+ EL AL+ N TW +   P +   IGC+WVYK+K +ADGS+ERYKARLVAKGYTQ 
Sbjct: 821  IKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGSIERYKARLVAKGYTQM 880

Query: 1766 EGIDYFDTFSPVAKMT 1813
            EG+DY   FSPVAK+T
Sbjct: 881  EGLDYLYAFSPVAKLT 896


>KYP36109.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1115

 Score =  486 bits (1251), Expect = e-156
 Identities = 273/621 (43%), Positives = 375/621 (60%), Gaps = 17/621 (2%)
 Frame = +2

Query: 2    RITADLVLEDALYLPEFNINLISIPKLTRGSH----FSVRFVNENCIIQDPLQRK-IGSG 166
            +++ D V+ D L++P F+ NL+S+PKL   +     FS +F N  C IQD    K IGS 
Sbjct: 104  QLSPDFVIHDVLFVPNFSFNLLSLPKLLLTAPCRVIFSNQFSNILCQIQDMNTLKMIGSA 163

Query: 167  KLKHGLYHLDYGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPA 346
             LK GL+HLD G  +     S  NAT      I NS +WHFR GH S  ++++L++ FP 
Sbjct: 164  NLKEGLFHLDIGKERRS---STNNATATP---INNSNLWHFRLGHLSSNRLNVLNQQFPF 217

Query: 347  IHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVD 526
            I  + + VCD+CH A+Q++L +  S++R    FDL+H+D+WGP S  SIHG+++FLTI+D
Sbjct: 218  ISKHSNEVCDVCHFAKQKKLSYSPSSSRVSKIFDLIHMDIWGPFSKASIHGHKYFLTILD 277

Query: 527  DHSRYTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIH 706
            D SRYTW VLLK K EVK  V  F N+VENQ+  KVK IRSDNG EF L D    +GIIH
Sbjct: 278  DFSRYTWVVLLKSKSEVKTHVHNFINLVENQYETKVKCIRSDNGPEFFLRDFFNSKGIIH 337

Query: 707  QLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNS 886
            Q SCV T +QN RVERKHQH+L+VARALM Q+ LP   WSYAI HA+ LINR+PS +++ 
Sbjct: 338  QTSCVYTPQQNGRVERKHQHILNVARALMFQSKLPSNFWSYAIKHAIFLINRVPSPIISH 397

Query: 887  SSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDV 1066
             +P++LL+ + P  + L+VFGCLCY ST+ + R KF+ R+RK +F+G++   KG V  D+
Sbjct: 398  KTPFELLNKIPPDFSMLKVFGCLCYASTH-NQRHKFEPRSRKGIFMGFQNGTKGFVILDI 456

Query: 1067 RSREIIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXX 1246
             +REI+VSRNV+F+E  FP+  ++S  +  ++ +                          
Sbjct: 457  NTREILVSRNVIFHETSFPF--HTSAPTSPFITQ------------------------PS 490

Query: 1247 LSLNGQPSSFPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDY 1426
            L+++  P     PP +P    DT    N  PD               + P  P S  +D 
Sbjct: 491  LTISPNPDILTTPPTSP---NDTSPSQNPNPDAS----------ASPSSPAAPTSPFHDS 537

Query: 1427 ICNHISSINPPRYPIHAYVSYASLSQPHRA------------YTMSLDAVPEPSSFCEAS 1570
            I ++ +S +    P H   S A +  P R+            Y   L ++    S   + 
Sbjct: 538  ISSYPTSTDFDIVPHHRSSSPA-IPPPRRSERDIHPPPYLSEYQYKLPSLKSVQSSTRSI 596

Query: 1571 KHTCWVEAMQQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAK 1750
            ++ CW EAM  EL ALE N TW +V+ P++V PIGCKWV+K+KR  +GS+ERYKARLVAK
Sbjct: 597  QNPCWREAMTCELKALELNHTWDVVETPSHVRPIGCKWVFKIKRLPNGSIERYKARLVAK 656

Query: 1751 GYTQTEGIDYFDTFSPVAKMT 1813
            GY+Q EGIDYF+TFSPV KMT
Sbjct: 657  GYSQIEGIDYFETFSPVVKMT 677


>KYP68601.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 549

 Score =  468 bits (1203), Expect = e-156
 Identities = 252/603 (41%), Positives = 358/603 (59%), Gaps = 7/603 (1%)
 Frame = +2

Query: 20   VLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRK-IGSGKLKHGLYHLD 196
            +L D LY+PEF  NLISIPKLT+     + F + +C+IQD    K I    +++ LY L 
Sbjct: 1    MLYDVLYVPEFKYNLISIPKLTKTIKCKLIFDDLHCVIQDMTTLKMIERADVQNCLYVLS 60

Query: 197  YGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKSLVCD 376
                   P    +N+ +    T+P   +WHFR GH S+  +  + K+FP I  +   VCD
Sbjct: 61   QPTKLQAPNQHIINSIIAKKPTVPFFDLWHFRLGHPSILVLQNICKHFPFIKFDSMKVCD 120

Query: 377  ICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTWTVL 556
             CHLA+Q +LPF    +++   FDL+H+D+WGP ++ SI G+++FLTIVDD +R+TW  L
Sbjct: 121  YCHLAKQSKLPFPPGIHKSSAPFDLIHIDIWGPLAISSIQGHKYFLTIVDDFTRHTWLFL 180

Query: 557  LKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLEQ 736
            +K K E +  V  F  +V+ QF++++K +R+DNG EF++S + ++ GIIHQ SCVET +Q
Sbjct: 181  MKSKHETRILVKNFITLVQTQFNKRIKILRTDNGLEFSMSSIYQDLGIIHQTSCVETPQQ 240

Query: 737  NARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHGV 916
            NA VERKH+H+L+V R+L+  + LPK  WS+A+ HAV  INR+PS VLN  SP+QLL+  
Sbjct: 241  NAVVERKHKHILNVTRSLLFHSKLPKSFWSFAVNHAVFFINRLPSPVLNQLSPFQLLYNT 300

Query: 917  LPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIVSRN 1096
             P LN+LR FG LC+ ST    R K D RA+KC+FLG+K   KG + +D+++REI +SRN
Sbjct: 301  KPNLNDLRFFGSLCFASTLQQHRTKLDPRAKKCLFLGFKPGTKGYIVFDLQTREISISRN 360

Query: 1097 -VVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQPSS 1273
              + +E    Y+  SS                                    ++  Q  +
Sbjct: 361  QQISHEPSPTYQVPSSSH----------------------------------TMPNQSVT 386

Query: 1274 FPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYICNHISSIN 1453
             P P ++P      P                   LR S R   PP++L D+ CN ++S +
Sbjct: 387  TPRPAHSPQQPPPLP-------------------LRRSQRIPFPPTYLKDFHCNFLTS-S 426

Query: 1454 PP-----RYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTAL 1618
            P       +PI + ++Y +LS  H  Y +SL    EP  + +A K   WV AM+ E+ AL
Sbjct: 427  PQLSKGISHPISSVINYNTLSSSHLHYVLSLSTHEEPKFYHQAVKLQEWVVAMKAEIDAL 486

Query: 1619 EKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSP 1798
              N TW IVD P+   PIGCKWVYK+K ++DGS+ERYKARLVAKG+TQTEG+DYF+TF+P
Sbjct: 487  TANNTWTIVDLPSGKHPIGCKWVYKIKYRSDGSVERYKARLVAKGFTQTEGLDYFETFAP 546

Query: 1799 VAK 1807
            VAK
Sbjct: 547  VAK 549


>KYP64431.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 812

 Score =  476 bits (1226), Expect = e-156
 Identities = 256/610 (41%), Positives = 364/610 (59%), Gaps = 6/610 (0%)
 Frame = +2

Query: 2    RITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRK-IGSGKLKH 178
            R++ D VL D LY+PEF  NLISIPKLT+     + F + +C+IQD    K IG   +++
Sbjct: 55   RLSRDFVLYDVLYVPEFKYNLISIPKLTKTIKCKLIFDDLHCVIQDMTTLKMIGRADVQN 114

Query: 179  GLYHLDYGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVN 358
             LY L       VP    +N+ +  + T+P   +WHFR GH S+  +  + K+F  I  +
Sbjct: 115  CLYVLSQPTKPQVPNQHIINSIIAKNPTVPFFDLWHFRLGHPSILVLQNICKHFLFIKFD 174

Query: 359  KSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSR 538
               VCD CHLA+Q +LPF    +++   FDL+H+D+WGP ++ SI G+++FLTIVDD +R
Sbjct: 175  SMKVCDYCHLAKQSKLPFPPGIHKSSAPFDLIHIDIWGPLAISSIQGHKYFLTIVDDFTR 234

Query: 539  YTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSC 718
            +TW  L+K K E +  V  F  +V+ QF++++K +R+DNG EF++S + ++ GIIHQ SC
Sbjct: 235  HTWLFLMKSKHETRILVKNFITLVQTQFNKRIKILRTDNGLEFSMSSIYQDLGIIHQTSC 294

Query: 719  VETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPY 898
            VET +QNA VERKH+H+L+V R+L+  + LPK  WS+A+ HAV  INR+PS VLN  SP+
Sbjct: 295  VETPQQNAVVERKHKHILNVTRSLLFHSKLPKSFWSFAVNHAVFFINRLPSPVLNQLSPF 354

Query: 899  QLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSRE 1078
            QLL+   P LN+LR FG LC+ ST    R K D RA+KC+FLG+K   KG + +D+++RE
Sbjct: 355  QLLYNTKPNLNDLRFFGSLCFASTLQQHRTKLDPRAKKCLFLGFKPGTKGYIVFDLQTRE 414

Query: 1079 IIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLN 1258
            I +SRNV+FY     Y+  SS                                       
Sbjct: 415  ISISRNVIFYST---YQVPSS--------------------------------------- 432

Query: 1259 GQPSSFPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYICNH 1438
                + PN   T +    +P  +  LP            LR S R   PP++L D+  N 
Sbjct: 433  --SHTMPNQSVTTSRPAHSPQQSPPLP------------LRRSQRIPFPPTYLKDFHYNF 478

Query: 1439 ISSINPP-----RYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQ 1603
            ++S +P       +P+ + ++Y +LS  H  Y +SL    EP  + +A K   WV AM+ 
Sbjct: 479  LTS-SPELSKGISHPLSSVINYNTLSSSHLHYVLSLSTHEEPKFYHQAVKSQEWVVAMKA 537

Query: 1604 ELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYF 1783
            E+ AL  N TW IVD P+   PIGCKWVYK+K ++DGS+ERYKARLVAKG+TQTEG+DYF
Sbjct: 538  EIDALTANNTWTIVDLPSGKHPIGCKWVYKIKYRSDGSVERYKARLVAKGFTQTEGLDYF 597

Query: 1784 DTFSPVAKMT 1813
            +T +PV K+T
Sbjct: 598  ETCAPVEKLT 607


>KYP70921.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1352

 Score =  489 bits (1260), Expect = e-155
 Identities = 262/619 (42%), Positives = 364/619 (58%), Gaps = 15/619 (2%)
 Frame = +2

Query: 2    RITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDP-LQRKIGSGKLKH 178
            + T    L D L++PEF  NLISI KL       + F + +C+IQD   + KIG+  ++ 
Sbjct: 353  KFTDTFYLTDVLFIPEFKYNLISISKLVSSLDVQLIFYSTHCLIQDVNTKEKIGTVDVEV 412

Query: 179  GLYHLDYGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVN 358
            GLY +       V   S ++A  +  ++I N  +WHFR GH    K+  + + +P ++ N
Sbjct: 413  GLYTMT----TAVVQPSILSAIYNPEWSIQNIDLWHFRLGHLPYDKLHSMKQYYPCLYSN 468

Query: 359  KSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSR 538
            K   C+ CH A+Q++L F +S++ A   F L+H+D+WGPCS  SIHG+R+FLTIVDDH+R
Sbjct: 469  KHFTCNTCHHAKQKKLSFPLSHSHALQSFALLHIDIWGPCSKTSIHGHRYFLTIVDDHTR 528

Query: 539  YTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSC 718
            YTW  L+  K +    V  F + +ENQF+ +VK IR+DNG EF++++    +GIIHQ +C
Sbjct: 529  YTWVFLMASKADTCNCVTNFISHIENQFATRVKVIRTDNGAEFSMNNYFDSKGIIHQTTC 588

Query: 719  VETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPY 898
            +ET EQN  VERKHQHLL+V RAL+ Q++LP   W++A++HA ++IN +P+  L  +SP+
Sbjct: 589  IETPEQNRIVERKHQHLLNVTRALLFQSNLPPTFWNFALMHATYIINCIPTPFLQHTSPF 648

Query: 899  QLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSRE 1078
            + L+G    +  LRVFGCLCY ST  + R K D RA  CVFLG++ H KG +T+++ +R 
Sbjct: 649  ENLNGKPCDITTLRVFGCLCYVSTLKAHRTKLDPRASPCVFLGFQPHTKGYLTFNLNTRS 708

Query: 1079 IIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLN 1258
            I VSRNVVFYEN FPY    ++ +                                    
Sbjct: 709  IEVSRNVVFYENHFPYFTQDTQSA------------------------------------ 732

Query: 1259 GQPSSFPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHS----------TRPHKPP 1408
               SS P+ P TP TS     D N  P           +   S          TR   PP
Sbjct: 733  ---SSTPSLP-TPFTSNPMIHDYNFYPPSPSSHPPHSLSSPESPTSSPIPSRPTRSRHPP 788

Query: 1409 SHLNDYICNHIS---SINPP-RYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKH 1576
            S+L DY     S   S +P  RYP+ + +SY  LS P R + MS+  + EP S+ EASK 
Sbjct: 789  SYLRDYHMTFTSTGPSSSPGIRYPLDSVISYNRLSHPFRHFIMSISLLTEPKSYAEASKS 848

Query: 1577 TCWVEAMQQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGY 1756
             CW++AM  E+TALE N TW +   P +   IGCKW+YKVK  ADGS+ER+KARLVAKGY
Sbjct: 849  DCWIKAMTDEITALEANNTWTVTSLPPHKTAIGCKWIYKVKHHADGSVERHKARLVAKGY 908

Query: 1757 TQTEGIDYFDTFSPVAKMT 1813
            TQ EG+D+ DTF+PVAK+T
Sbjct: 909  TQLEGLDFLDTFAPVAKLT 927


>KYP42564.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1427

 Score =  490 bits (1261), Expect = e-155
 Identities = 255/605 (42%), Positives = 357/605 (59%), Gaps = 8/605 (1%)
 Frame = +2

Query: 23   LEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQDPLQRK-IGSGKLKHGLYHLDY 199
            L D LY+P F++N+IS+ K+     + + F   +CIIQD   +K IG  ++K+ LY L  
Sbjct: 402  LNDVLYIPNFHLNIISVQKIAASLDYELMFNKNSCIIQDLTSKKTIGLAEVKNHLYILQR 461

Query: 200  GG--GKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKSLVC 373
                  +    S+         T  +  +WH+R GH S   +  + + FP +  NK++ C
Sbjct: 462  PSKDNSISACKSNSVLNAQPKGTTSSFDLWHYRLGHPSHVVLQTVKRLFPYVTYNKNITC 521

Query: 374  DICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTWTV 553
            D CH  +Q RLPF  S  ++ +CFDLVH+D+WGP ++PSIHG+++FLTIVDD+SR+TW  
Sbjct: 522  DYCHFGKQARLPFPTSTTKSLSCFDLVHMDIWGPLAIPSIHGHKYFLTIVDDYSRHTWIY 581

Query: 554  LLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLE 733
             +K K E +  +  F + V+ QF++ +K +RSDNG EF +  +    GI+HQ SCVET +
Sbjct: 582  FMKSKGETRNLIQNFISYVQTQFTKHIKVLRSDNGVEFAMDQLYATYGIVHQTSCVETPQ 641

Query: 734  QNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHG 913
            QN+ VERKH+H+L++ R L+  +++PK  W YA+ HA+HLINR+PS VLN+SSPYQ+L+ 
Sbjct: 642  QNSVVERKHRHILNITRTLLFHSNVPKSFWCYAVGHAIHLINRLPSPVLNNSSPYQMLYD 701

Query: 914  VLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIVSR 1093
              P L +L+VFG LCY ST   GR K   +A K V+LG K   KG +  D+ +R I VSR
Sbjct: 702  KPPTLLDLKVFGSLCYASTLVQGRSKLAPKATKGVYLGVKQGTKGFLVLDLLTRSIFVSR 761

Query: 1094 NVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQPSS 1273
            NVVFYE+IFP+     +GS                                  L+   + 
Sbjct: 762  NVVFYEHIFPF---FEKGSTVITNSQQQNDACFDFLYLDSSSHPVTTIDNSSLLDIDSAH 818

Query: 1274 FPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYICNHISSIN 1453
            + N  N         ID +  P            LR STR    P++L DY CN +  + 
Sbjct: 819  YENDLN--------DIDESAHPS----ETSSPSQLRKSTRHKCSPAYLKDYHCNLLIGVP 866

Query: 1454 PP-----RYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTAL 1618
            PP     RYP++  +SY SLS  +  Y +S+    EP +F +A K+  WVEAMQ EL AL
Sbjct: 867  PPEDKHIRYPLNTVLSYDSLSASYSRYVLSITTHVEPHTFNQAVKNKVWVEAMQAELDAL 926

Query: 1619 EKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSP 1798
            E N+TW I+  P    PIG KWVYK+K K+DGS+ERYKARLV KGYTQ +G+DYFDTF+P
Sbjct: 927  EHNKTWTIMPLPPGKTPIGSKWVYKIKYKSDGSIERYKARLVVKGYTQIQGLDYFDTFAP 986

Query: 1799 VAKMT 1813
            VAK++
Sbjct: 987  VAKLS 991


>KYP65734.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  476 bits (1225), Expect = e-153
 Identities = 257/614 (41%), Positives = 365/614 (59%), Gaps = 15/614 (2%)
 Frame = +2

Query: 17   LVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCII-QDPLQRKIGSGKLKHGLYHL 193
            L+L D L++P F +NLIS+ +L       +    ++C+I Q+  ++ IG+ K +HGLY +
Sbjct: 1    LILHDVLFVPSFCVNLISVSQLINSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60

Query: 194  DYGGGK----VVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAI-HVN 358
                        P V +   + DSS    +S +WH R GH S +   +++  FP + + +
Sbjct: 61   IRDSATRSQLTQPFVGNT-ISKDSS----DSVLWHHRLGHLSNSTHRIIASQFPIVSYQH 115

Query: 359  KSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSR 538
              + CDICH A+Q+RLP  +SN ++ +  +L+H D+WGP S+PS+ G+++FLT+VDD SR
Sbjct: 116  HDVPCDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLTLVDDFSR 175

Query: 539  YTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSC 718
            +TW V++K K E +  +  F + +E QF  K+K +R+DNG+EF + D+   +GIIHQ SC
Sbjct: 176  FTWIVMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMHDLFLSKGIIHQGSC 235

Query: 719  VETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPY 898
            VET +QN  VERKHQH+L+ ARAL  QASLPK  W++AI HAVHLINR+PS +L++ +PY
Sbjct: 236  VETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIPSPLLDNKTPY 295

Query: 899  QLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSRE 1078
            Q LH   P L +LR FGCL Y ST  + R KF  RA+K V LGYK  VKG + YD+ S E
Sbjct: 296  QALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGYLLYDLHSHE 355

Query: 1079 IIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLN 1258
              +SRNV F+E  FP+   S                                      ++
Sbjct: 356  FFMSRNVFFHEFTFPFHTPSQTS---------------------LTQPSPTPITIQTPIS 394

Query: 1259 GQPSSFPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYIC-- 1432
                   + P +P +S   P +  H P             RHSTR  +PPS+L DY C  
Sbjct: 395  SPYDLDNHVPPSPTSSTSIPPEQPHQP-----LSPAPAPSRHSTRMRQPPSYLKDYHCSL 449

Query: 1433 -------NHISSINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVE 1591
                   N  S I+ P + I + ++Y   S  ++ + +S+    EP ++ +ASK+ CW+ 
Sbjct: 450  LAPTGRINSFSGISTP-HSISSTLTYDFCSPSYKQFCLSVSTNFEPHTYTQASKYDCWIM 508

Query: 1592 AMQQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEG 1771
            AM+ EL AL+ NQTW IVD P+   PIGCKWVYK+K  +DGS+ERYKARLVAKGY+QTEG
Sbjct: 509  AMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEG 568

Query: 1772 IDYFDTFSPVAKMT 1813
            +DY DT+SPVAK+T
Sbjct: 569  LDYLDTYSPVAKLT 582


>GAU40997.1 hypothetical protein TSUD_92220 [Trifolium subterraneum]
          Length = 1157

 Score =  473 bits (1217), Expect = e-151
 Identities = 263/588 (44%), Positives = 343/588 (58%), Gaps = 1/588 (0%)
 Frame = +2

Query: 53   NINLISIPKLTRGSHFSVRFVNENCIIQDPLQRKIGSGKLKHGLYHLDYGGGKVVPVVSH 232
            N NLIS+ K+T+  H + RF +  CIIQ+ LQR IGS K  HGLY+L+       P    
Sbjct: 356  NFNLISVSKVTQDLHCTFRFTDHICIIQNSLQRTIGSAKFVHGLYYLEGTSPNSRPSPG- 414

Query: 233  VNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKSLVCDICHLARQRRLPF 412
               TV +S  IP+SA+WHFRFGHAS +                                 
Sbjct: 415  ---TVCNSINIPSSAVWHFRFGHASYS--------------------------------- 438

Query: 413  VVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTWTVLLKGKFEVKGKVI 592
              S++RA +CF+L+H+D+WGP S P++HG+++FLTIVDD SRYTW VLLKGK E   ++ 
Sbjct: 439  --SSSRATHCFELLHMDLWGPYSTPTLHGHKYFLTIVDDFSRYTWIVLLKGKHEAASQIQ 496

Query: 593  EFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLEQNARVERKHQHLL 772
            +F  +VE QF  K+K ++SDNG EF+L      +GI+HQ SCV T +QN RVERKHQ +L
Sbjct: 497  KFILLVETQFECKIKTLKSDNGPEFSLQSFYASKGILHQTSCVHTPQQNGRVERKHQCIL 556

Query: 773  SVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGC 952
            +VARAL+ Q+ LP   W Y + HAV+++NR+PS  ++   PY LLH  LP L++LRVFGC
Sbjct: 557  NVARALLFQSKLPPKFWGYDVTHAVYIMNRIPSSAIHDQLPYHLLHKSLPDLSSLRVFGC 616

Query: 953  LCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIVSRNVVFYENIFPY-K 1129
            LCY S+      K  SRA KC+FLGY+  VKG V  ++ + +  +S+ VVF E +FPY  
Sbjct: 617  LCYISSTDVNMSKLQSRATKCIFLGYRTGVKGFVVLNLHNYQTSISKIVVFEETVFPYTT 676

Query: 1130 CNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQPSSFPNPPNTPATSQ 1309
             N +  S  YL   +                         SL+  PSS  N  + P  S 
Sbjct: 677  SNPNIQSWEYLDSTEPHSQQHTNMSSPTIDPILPMSLPQPSLDSPPSSDFN--SIPPLSS 734

Query: 1310 DTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYICNHISSINPPRYPIHAYVSY 1489
              P                    R STR    P HL DY CN+++S  P  YPI  Y S+
Sbjct: 735  PPP-------------------KRQSTRLKTRPIHLLDYRCNNVTSKTP--YPISNYTSH 773

Query: 1490 ASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTALEKNQTWIIVDKPANVIP 1669
            ++LS     YT+SL    EPSS+ EA K   W++AMQ EL AL +N TW IV  P+ V P
Sbjct: 774  SNLSSHQLTYTLSLLNDSEPSSYNEACKSDNWIKAMQNELHALSQNHTWTIVGLPSGVTP 833

Query: 1670 IGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSPVAKMT 1813
            IG KWVYK+KR +DG++ERYKARLVAKGY Q EGID+F+TFS VAKMT
Sbjct: 834  IGSKWVYKIKRHSDGTIERYKARLVAKGYNQREGIDFFETFSLVAKMT 881


>KYP70315.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 703

 Score =  458 bits (1178), Expect = e-150
 Identities = 238/586 (40%), Positives = 344/586 (58%), Gaps = 7/586 (1%)
 Frame = +2

Query: 2    RITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQD-PLQRKIGSGKLKH 178
            + T    L D L++P+F  NLISI KL       + F + + +IQD   + KIG+  +  
Sbjct: 142  KFTDTFYLSDVLFIPDFKFNLISISKLVSSLDVQLIFCSTSYVIQDLKTKEKIGTVDVNV 201

Query: 179  GLYHLDYGGGKVVPVVSHVNATV-DSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHV 355
            GLY +      +  + + + +TV +   +I +  +WHFR GH    K+  + + +P ++ 
Sbjct: 202  GLYTMT-----IAAIQTSICSTVCNPECSIQSIDLWHFRMGHLPYEKLHSMKQYYPCLYS 256

Query: 356  NKSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHS 535
            NK   C+ CH A+Q++LPF +S++     FDL+H+D+WGPCS  S+HG+R+FLTIVDDH+
Sbjct: 257  NKHFTCNTCHYAKQKKLPFPLSHSHTSKSFDLLHIDIWGPCSKISLHGHRYFLTIVDDHT 316

Query: 536  RYTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLS 715
            R+TW  L+  K EV+  V  F   VENQF  +VK IR+DNG EF+++     +GIIHQ +
Sbjct: 317  RFTWVFLMTTKAEVRNCVTNFIAYVENQFETQVKVIRTDNGVEFSMNKYFESKGIIHQTT 376

Query: 716  CVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSP 895
            C+ET EQN  VERKHQHLL+V RAL+ Q++LP   W +A++HA ++IN + +  L   SP
Sbjct: 377  CIETPEQNGIVERKHQHLLNVTRALLFQSALPPSFWCFALMHATYIINCLTTPFLQHISP 436

Query: 896  YQLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSR 1075
            ++ L+G    +  LRVFGCLCY ST  + R K D RA  CVFLG+K H KG +T+++ +R
Sbjct: 437  FEKLYGKPCDITTLRVFGCLCYVSTIKAHRKKLDPRAHPCVFLGFKPHTKGYLTFNLHTR 496

Query: 1076 EIIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSL 1255
             I VSRNV+FYE+ FPY  ++++ +                                L  
Sbjct: 497  NIEVSRNVIFYEDHFPYVDHTAQPT------------SFTPSLPLPFTNDHIISDFNLHN 544

Query: 1256 NGQPSSFPNPP-NTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYIC 1432
                +S P+P  ++P ++  TP                    R STR H PPS+L D+  
Sbjct: 545  LAPSTSQPSPSISSPESAHSTPAP------------------RRSTRSHHPPSYLRDFHV 586

Query: 1433 NHISSINPP----RYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQ 1600
               S+ +P     RYP+ +++SYA LS   R + +S+    EP+SF EASKH CW++AM+
Sbjct: 587  TLTSTGSPSSPGIRYPLESFISYAHLSSSFRHFILSISTTTEPNSFAEASKHDCWIKAMK 646

Query: 1601 QELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKAR 1738
             E+TALE N TW I   P N   IGCKW+YK+K  ADGS+ERYKAR
Sbjct: 647  DEITALEANHTWTITSLPPNKTAIGCKWIYKIKHNADGSVERYKAR 692


>KYP43110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1353

 Score =  474 bits (1221), Expect = e-149
 Identities = 255/604 (42%), Positives = 359/604 (59%), Gaps = 7/604 (1%)
 Frame = +2

Query: 23   LEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQ-DPLQRKIGSGKLKHGLYHLDY 199
            L D L++P F+ NLIS+ KL +    ++ F + +C IQ +   R IG+ +L+ GLY +  
Sbjct: 343  LTDVLFIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQANHSMRMIGAAELRAGLYAM-- 400

Query: 200  GGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNK-SLVCD 376
                V    S+V     S +    S +WH R GH S  K+  L  ++P I  NK SL C+
Sbjct: 401  ----VSSPESNVVHHCTSHFFTYQSDLWHLRLGHLSHDKLSALKGSYPEIQCNKISLPCE 456

Query: 377  ICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTWTVL 556
            ICHLA+ +RLPF  S  ++EN FDL+H+D+WGP S+ SI G+++FLTIVDD SR+TW   
Sbjct: 457  ICHLAKHKRLPFPDSLTKSENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFF 516

Query: 557  LKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLEQ 736
            +K KFE K  +  F + V+ QF + +K IR+DNG+EF L D   + GI+HQ SCV T +Q
Sbjct: 517  MKNKFETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEFLLKDWYAKLGIVHQTSCVNTPQQ 576

Query: 737  NARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHGV 916
            N  VERKHQH+LS+ARALM Q+++ K  W+YAI HAVHLINR+P+  L  +SPY +L+  
Sbjct: 577  NGVVERKHQHILSMARALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSE 636

Query: 917  LPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIVSRN 1096
             P  ++L+VFGCL + ST    R K + R+RKC+FLGY    KG + YD+++RE  +SR+
Sbjct: 637  KPDFSHLKVFGCLAFASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRD 696

Query: 1097 VVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQPSSF 1276
            V FYENIFP + + S      ++  D                        L       + 
Sbjct: 697  VQFYENIFPLQKDFS------IQSTDGPVVPIAQMPLTSCDPIPSHTHDNLDETEHEHNS 750

Query: 1277 PNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYICNHIS---- 1444
               P T +++ D P    ++P+            R S R    P +L DY C   +    
Sbjct: 751  STLPMTNSSNSDQPNIEINIPEIR----------RTSQRVKNRPGYLQDYHCTLAASKVD 800

Query: 1445 -SINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTALE 1621
             S +  RYPI  Y+ Y S S   +++  ++ ++ EP S+ +A  H CW EA++ EL AL+
Sbjct: 801  QSSSTARYPISDYLPYTSYSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALD 860

Query: 1622 KNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSPV 1801
            K +TWI+ D P N   +GC+WV+KVK  ADGS+ERYKARLVAKG+TQ  G+DY DTFSPV
Sbjct: 861  KQKTWILTDLPPNKRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPV 920

Query: 1802 AKMT 1813
             +MT
Sbjct: 921  VRMT 924


>KYP68426.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1423

 Score =  474 bits (1221), Expect = e-149
 Identities = 255/604 (42%), Positives = 359/604 (59%), Gaps = 7/604 (1%)
 Frame = +2

Query: 23   LEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCIIQ-DPLQRKIGSGKLKHGLYHLDY 199
            L D L++P F+ NLIS+ KL +    ++ F + +C IQ +   R IG+ +L+ GLY +  
Sbjct: 413  LTDVLFIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQANHSMRMIGAAELRAGLYAM-- 470

Query: 200  GGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNK-SLVCD 376
                V    S+V     S +    S +WH R GH S  K+  L  ++P I  NK SL C+
Sbjct: 471  ----VSSPESNVVHHCTSHFFTYQSDLWHLRLGHLSHDKLSALKGSYPEIQCNKISLPCE 526

Query: 377  ICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVDDHSRYTWTVL 556
            ICHLA+ +RLPF  S  ++EN FDL+H+D+WGP S+ SI G+++FLTIVDD SR+TW   
Sbjct: 527  ICHLAKHKRLPFPDSLTKSENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFF 586

Query: 557  LKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLEQ 736
            +K KFE K  +  F + V+ QF + +K IR+DNG+EF L D   + GI+HQ SCV T +Q
Sbjct: 587  MKNKFETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEFLLKDWYAKLGIVHQTSCVNTPQQ 646

Query: 737  NARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHGV 916
            N  VERKHQH+LS+ARALM Q+++ K  W+YAI HAVHLINR+P+  L  +SPY +L+  
Sbjct: 647  NGVVERKHQHILSMARALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSE 706

Query: 917  LPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDVRSREIIVSRN 1096
             P  ++L+VFGCL + ST    R K + R+RKC+FLGY    KG + YD+++RE  +SR+
Sbjct: 707  KPDFSHLKVFGCLAFASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRD 766

Query: 1097 VVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXXLSLNGQPSSF 1276
            V FYENIFP + + S      ++  D                        L       + 
Sbjct: 767  VQFYENIFPLQKDFS------IQSTDGPVVPIAQMPLTSCDPIPSHTHDNLDETEHEHNS 820

Query: 1277 PNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDYICNHIS---- 1444
               P T +++ D P    ++P+            R S R    P +L DY C   +    
Sbjct: 821  STLPMTNSSNSDQPNIEINIPEIR----------RTSQRVKNRPGYLQDYHCTLAASKVD 870

Query: 1445 -SINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTALE 1621
             S +  RYPI  Y+ Y S S   +++  ++ ++ EP S+ +A  H CW EA++ EL AL+
Sbjct: 871  QSSSTARYPISDYLPYTSYSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALD 930

Query: 1622 KNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSPV 1801
            K +TWI+ D P N   +GC+WV+KVK  ADGS+ERYKARLVAKG+TQ  G+DY DTFSPV
Sbjct: 931  KQKTWILTDLPPNKRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPV 990

Query: 1802 AKMT 1813
             +MT
Sbjct: 991  VRMT 994


>KYP31387.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  446 bits (1147), Expect = e-142
 Identities = 250/610 (40%), Positives = 349/610 (57%), Gaps = 7/610 (1%)
 Frame = +2

Query: 5    ITADLVLEDALYLPEFNINLISIPKLTRGSHFSVRFVNENCII-QDPLQRKIGSGKLKHG 181
            +  +L+L + L++P+F++ LISIPKL   +   V F   +C+I Q    + IG  K   G
Sbjct: 65   VLGNLILHNTLFVPDFSVQLISIPKLINSNDCLVIFCKNHCVIVQITTFQMIGVAKKYQG 124

Query: 182  LYHLDYGGGKVVPVVSHVNATVDSSYT--IPNSAI---WHFRFGHASLAKIDMLSKNFPA 346
            L+HL       V   S ++      +T  + N+ I   WH + GH S   + +L+  + A
Sbjct: 125  LFHLLGNNNLNVSDSSTLSYQSSLQHTALVNNTNICTLWHMKLGHPSNKILQVLASQYSA 184

Query: 347  IHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLVHLDVWGPCSLPSIHGYRFFLTIVD 526
            I  N    CD C  A+Q++LP+  S  R  + F+L+H+D+WGP ++ SI GY++FLTIVD
Sbjct: 185  ISFNPVHACDACSFAKQKKLPYSTSTTRTTSFFELIHVDIWGPIAITSIEGYKYFLTIVD 244

Query: 527  DHSRYTWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIH 706
            D+SR+TW +LLK K +VK  +  F  + ENQFS K+K +RSDN  EF ++D    +GI H
Sbjct: 245  DYSRFTWILLLKNKSDVKIILPNFIILTENQFSCKLKRLRSDNRKEFFINDFFNAKGIFH 304

Query: 707  QLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNS 886
            + SCVET +QN  VERKHQHLL+V RAL+ QA +P   WS+A+  AV++INR+P+  LN 
Sbjct: 305  ETSCVETPQQNGIVERKHQHLLNVCRALLFQAKVPNNFWSHALKLAVYIINRLPTPFLNH 364

Query: 887  SSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGRGKFDSRARKCVFLGYKMHVKGAVTYDV 1066
             SPY+L+H + PYL+NL+VFGCL Y S+  SGR K   ++ KC+FLGYK   KG V YD+
Sbjct: 365  KSPYELVHLIKPYLSNLKVFGCLSYASSLTSGRTKLAPKSLKCIFLGYKPGTKGYVLYDL 424

Query: 1067 RSREIIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGXXXXXXXXXXXXXXXXXXXXXX 1246
             S+ I  SRNVVF+ENIFPY  + S  S   +    +                       
Sbjct: 425  HSKSIFTSRNVVFHENIFPYHTSQSDTSQLPIDHTHSTTDIIHFDF-------------- 470

Query: 1247 LSLNGQPSSFPNPPNTPATSQDTPIDTNHLPDXXXXXXXXXXNLRHSTRPHKPPSHLNDY 1426
                  P + P  P T     D    +N + D          N   +T+   PP+ ++  
Sbjct: 471  ------PPTLPISPATTVAINDN--SSNAVND------SIVSNDNQNTQIVIPPNRVS-- 514

Query: 1427 ICNHISSINPPRYPIHAYVSYASLSQPHRA-YTMSLDAVPEPSSFCEASKHTCWVEAMQQ 1603
                +   N PRY    Y   A  SQ H   Y M L        F  +S+  CW +AM  
Sbjct: 515  ----LRVKNRPRYLHQYYCGAAFASQSHSTPYPMHL--------FLSSSQSDCWQQAMAS 562

Query: 1604 ELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYF 1783
            EL AL+KN TW +   P +   +GC+WVY++K KADGS+ER+KARLVAKG+TQTEG+DYF
Sbjct: 563  ELIALDKNHTWTLTHLPPDKKLVGCRWVYRIKHKADGSIERFKARLVAKGFTQTEGVDYF 622

Query: 1784 DTFSPVAKMT 1813
            +TFSPV K+T
Sbjct: 623  ETFSPVVKLT 632