BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza35_contig00016275
         (809 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GAU10400.1 hypothetical protein TSUD_423410, partial [Trifolium ...   160   2e-44
ABO80459.1 RNA-directed DNA polymerase (Reverse transcriptase); ...   131   4e-39
GAU50297.1 hypothetical protein TSUD_288310 [Trifolium subterran...   150   2e-38
GAU12283.1 hypothetical protein TSUD_141910 [Trifolium subterran...   145   4e-36
GAU47648.1 hypothetical protein TSUD_27720 [Trifolium subterraneum]   142   1e-35
ABE80156.1 Ribonuclease H [Medicago truncatula]                       112   2e-35
GAU35042.1 hypothetical protein TSUD_30080 [Trifolium subterraneum]   143   4e-35
GAU50246.1 hypothetical protein TSUD_188980 [Trifolium subterran...   116   1e-34
GAU33259.1 hypothetical protein TSUD_333820 [Trifolium subterran...   134   2e-34
GAU41508.1 hypothetical protein TSUD_302460 [Trifolium subterran...   110   5e-34
GAU17063.1 hypothetical protein TSUD_105620 [Trifolium subterran...   136   1e-33
ABD28627.2 RNA-directed DNA polymerase (Reverse transcriptase); ...   120   1e-33
GAU34195.1 hypothetical protein TSUD_162960 [Trifolium subterran...   124   1e-31
GAU48831.1 hypothetical protein TSUD_190610 [Trifolium subterran...   126   1e-31
GAU16646.1 hypothetical protein TSUD_325960 [Trifolium subterran...   123   2e-31
GAU20193.1 hypothetical protein TSUD_352570 [Trifolium subterran...   122   4e-31
GAU23316.1 hypothetical protein TSUD_237700 [Trifolium subterran...   103   5e-31
GAU10666.1 hypothetical protein TSUD_425710, partial [Trifolium ...   121   8e-31
GAU23820.1 hypothetical protein TSUD_27290 [Trifolium subterraneum]   121   1e-30
GAU49781.1 hypothetical protein TSUD_188300 [Trifolium subterran...   123   1e-30

>GAU10400.1 hypothetical protein TSUD_423410, partial [Trifolium subterraneum]
          Length = 284

 Score =  160 bits (405), Expect = 2e-44
 Identities = 88/224 (39%), Positives = 124/224 (55%)
 Frame = -3

Query: 681 RCGNSWDFRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHK 502
           R  NS  F+   FF   D     ++   G  A  FLAG+W  W A+N  C+G   +   K
Sbjct: 29  RIWNSLGFQNSSFFSCSDLELWLRNNSIGLNAPTFLAGLWWNWRARNIFCVGNASIHSFK 88

Query: 501 LIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLL 322
           ++ EV  LV  I      + HT    RW+ WH  +    VLNVD S +G+ G  GFG L 
Sbjct: 89  VVAEVSKLVALIVFCFPARVHTDTPRRWISWHPCKTDCVVLNVDGSCLGDPGRAGFGGLF 148

Query: 321 RTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSV 142
           R  +GEW+ G  G +G    + AE   +Y+GL  A E G  R+ CYSDS+  L+L +   
Sbjct: 149 RKGDGEWIRGFSGYLGVTNIMLAELMAVYHGLKIAREAGYNRLFCYSDSKTVLDLLSKER 208

Query: 141 SANHVYVALISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
           ++ H Y A+I+ I++LL  +W+V L+H+LREGN  AD LAK+G+
Sbjct: 209 NSFHCYAAIIANIQDLLVLEWDVSLKHSLREGNFCADFLAKLGS 252


>ABO80459.1 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score =  131 bits (330), Expect(2) = 4e-39
 Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 1/219 (0%)
 Frame = -3

Query: 660  FRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKLIREVKI 481
            F   +FF   D     +  + GSKA+LF AG+W  W ++N++C+  E +   +L   +  
Sbjct: 621  FSEPYFFAVTDIEIWCKSGLIGSKAILFAAGLWWIWRSRNARCMSEESMLLQRLAANITY 680

Query: 480  LVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEW 301
             V+ IN         +  +R+V W+ S     +LNVD S +G+    GFG L+R   G +
Sbjct: 681  FVDDINSCFFQPLPVMVSDRYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRNSVGFY 740

Query: 300  LVGCYGSI-GSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVY 124
            L G  G +  S + L AE T IY G++TA + G   +  YSDS L++ L TT+ S  H++
Sbjct: 741  LSGFLGFLPSSSDILLAELTAIYDGINTAIDMGITDMAVYSDSLLSINLITTTSSKFHIH 800

Query: 123  VALISAIKELLGRDWEVELQHTLREGNNNADALAKMGAL 7
             ALI  I++ L       L HTLREGN +AD LAK+GA+
Sbjct: 801  AALIQDIRDKLSLR-NFSLNHTLREGNQSADYLAKLGAM 838



 Score = 58.9 bits (141), Expect(2) = 4e-39
 Identities = 25/54 (46%), Positives = 33/54 (61%)
 Frame = -2

Query: 802 LPTMQVLHRRGITQSPNCARCQGIVEETVLHCVTDCNLPGQMWQQLGFQDPVFF 641
           LPT  +LH R I  S  CARC G+ +E+V HC+ DC     +W  +GF +P FF
Sbjct: 575 LPTAALLHHRQIIASATCARC-GVSDESVFHCIRDCPFSKIIWHHIGFSEPYFF 627


>GAU50297.1 hypothetical protein TSUD_288310 [Trifolium subterraneum]
          Length = 545

 Score =  150 bits (379), Expect = 2e-38
 Identities = 86/231 (37%), Positives = 123/231 (53%)
 Frame = -3

Query: 702 RTVTYLDRCGNSWDFRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGG 523
           R   ++ R   +  F  Q FFQ  +     ++++ G  + LF+A +W  WCA+N  C+  
Sbjct: 285 RNCEFIKRFWKAIGFLGQTFFQGDNLNDWLRNSIDGPSSFLFMAAVWWIWCARNQLCMDN 344

Query: 522 EDVRCHKLIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGP 343
           E +    L    + L + + +   ++ +       V W+       +LNVD SS+GN G 
Sbjct: 345 EAISYFTLRTNTENLAQLLRM-CFIKQNISSTATMVRWNAHGGIGMILNVDGSSIGNPGI 403

Query: 342 VGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLAL 163
            GFG L+R  +G W+ G  G+IG    LQAE   IY+GL  AWE   + + CYSDS+ AL
Sbjct: 404 SGFGGLIRNSDGAWVHGFAGNIGHLNILQAELLAIYHGLVLAWELDIKDLCCYSDSKTAL 463

Query: 162 ELSTTSVSANHVYVALISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
           +L    V+  H Y A+I  IK+ L R+W V L H LREGNN AD L K GA
Sbjct: 464 KLIYDHVNEWHQYAAIIYNIKDFLSRNWRVRLVHMLREGNNCADILDKFGA 514


>GAU12283.1 hypothetical protein TSUD_141910 [Trifolium subterraneum]
          Length = 1049

 Score =  145 bits (367), Expect(2) = 4e-36
 Identities = 82/215 (38%), Positives = 121/215 (56%), Gaps = 3/215 (1%)
 Frame = -3

Query: 645  FFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKL---IREVKILV 475
            FFQ  D     ++ +  S   LF+A IW  W A+N+ CL  E +  + L   I +  +L+
Sbjct: 808  FFQGDDPYVWIRNGLHCSSMFLFMATIWWIWRARNALCLNSESILFYSLKLRIMDYALLI 867

Query: 474  EAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLV 295
            E  +      HH     + V W+       +LNVD SS+GN G  GFG L+   +G W++
Sbjct: 868  ENCHSN----HHDTSTSKLVKWNALGGTGMILNVDGSSLGNPGISGFGGLIHNADGAWVL 923

Query: 294  GCYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVAL 115
            G +G++G    L AE   IY GL  AW+   + + CYSDS++A++L + SV   H Y A+
Sbjct: 924  GFFGNLGVNNILHAELRAIYKGLLLAWDLNIKDLWCYSDSEMAIKLISESVDQWHHYAAI 983

Query: 114  ISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
            ++ I+++L RDW+V + HT REGN  AD LAK GA
Sbjct: 984  LNNIQDILRRDWQVLILHTFREGNAYADYLAKHGA 1018



 Score = 34.7 bits (78), Expect(2) = 4e-36
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 724 ETVLHCVTDCNLPGQMWQQLGFQDPVFF 641
           ET LHC+ DC+    +W+ +GF +  FF
Sbjct: 782 ETTLHCLRDCDFAQSIWKSIGFSNLNFF 809


>GAU47648.1 hypothetical protein TSUD_27720 [Trifolium subterraneum]
          Length = 521

 Score =  142 bits (359), Expect = 1e-35
 Identities = 79/224 (35%), Positives = 115/224 (51%)
 Frame = -3

Query: 681 RCGNSWDFRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHK 502
           RC  S       FF+  +F     + +     +LF A IW  WC +N+ C+  E +    
Sbjct: 274 RCNKS------IFFEDDEFYVWLWNGLDSPSKLLFTAAIWWIWCTRNNLCMNNESISQVS 327

Query: 501 LIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLL 322
           L   ++     +         T+   + V W+   +P  +LNVD SS+GN G  GFG L+
Sbjct: 328 LRMRIEDYAHLLR-ACLFNQITMSNTKLVKWNALGSPDMILNVDGSSIGNPGVSGFGGLI 386

Query: 321 RTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSV 142
              +G W  G  G+IG    L AE   +Y+GL  AW+   + + CYSDS+ A++L T  V
Sbjct: 387 HNSKGAWAHGFVGNIGFSNILHAELMALYHGLLLAWQLNIKELWCYSDSETAIKLITEPV 446

Query: 141 SANHVYVALISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
              H Y A++  IK++L R+W V + HT REGN  AD LAK+GA
Sbjct: 447 DEWHHYAAILLNIKDILAREWRVNIAHTFREGNACADYLAKLGA 490


>ABE80156.1 Ribonuclease H [Medicago truncatula]
          Length = 438

 Score =  112 bits (280), Expect(2) = 2e-35
 Identities = 69/199 (34%), Positives = 96/199 (48%), Gaps = 1/199 (0%)
 Frame = -3

Query: 603 MAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKLIREVKILVEAINLGSTVQHHTVRQE 424
           M+ S   +F  G+W AW  +N  CL  E +   +L   +      I      + +    +
Sbjct: 209 MSSSLPDIFFGGLWWAWRHRNLMCLNNETMSLFRLCNNIVSAATYIKSAFDSEENVNHSD 268

Query: 423 RWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEP 247
           R+V W+      H+LNVD S +G     G+G +LR   G ++ G  G I  S + LQAE 
Sbjct: 269 RFVKWNNRNHHDHILNVDGSCLGTPSRTGYGGILRNSAGLFISGFSGFIPNSTDILQAEL 328

Query: 246 TTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVEL 67
           T I+  L    +     ++CYSDS LA+ L        H Y  LI  IK+LL     + L
Sbjct: 329 TAIHQSLHMVIDSNMNDVMCYSDSLLAVNLIMNDTPRYHTYAVLIQNIKDLLSVR-NITL 387

Query: 66  QHTLREGNNNADALAKMGA 10
            HTLREGN  AD  AK+GA
Sbjct: 388 HHTLREGNQCADFFAKLGA 406



 Score = 65.5 bits (158), Expect(2) = 2e-35
 Identities = 29/56 (51%), Positives = 37/56 (66%)
 Frame = -2

Query: 808 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVTDCNLPGQMWQQLGFQDPVFF 641
           N +PT+ +LHRR I  SP CARC G  +ET LHCV DC+    +WQ++GF    FF
Sbjct: 142 NVVPTLSLLHRRNIAPSPTCARC-GEEDETFLHCVRDCHFSRSIWQKIGFTGNDFF 196


>GAU35042.1 hypothetical protein TSUD_30080 [Trifolium subterraneum]
          Length = 724

 Score =  143 bits (360), Expect = 4e-35
 Identities = 85/221 (38%), Positives = 125/221 (56%), Gaps = 1/221 (0%)
 Frame = -3

Query: 669  SWDFRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKLIRE 490
            S  F  + FFQ  D  S  ++ ++ S   LF+A IW  W  +N+ CL  E +    L  +
Sbjct: 475  SLGFTDRNFFQEVDSSSWLRNGLSCSSMFLFMAAIWWIWRTRNALCLDNELIPQFSL--K 532

Query: 489  VKILVEAINLGSTVQHHTVRQ-ERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTH 313
            ++I+  A+ L +   +H V    + V W+     + +LNVD S++GN G  GFG L+R  
Sbjct: 533  MRIVDYALLLKNCHFNHQVTTLPKIVRWNALGGTSMILNVDGSTIGNPGISGFGGLIRNA 592

Query: 312  EGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSAN 133
            +G W+ G +G++G    L AE   I  GL  AWE   + ++CYSDS  A++L T  V   
Sbjct: 593  DGAWIHGFFGNLGVTNILHAELMAILKGLLLAWELNIKDLLCYSDSATAIKLITEPVDVW 652

Query: 132  HVYVALISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
            H Y A+++ IK++L RDW+V + HT REGN  AD LAK GA
Sbjct: 653  HHYAAILNNIKDILNRDWQVSIFHTFREGNACADYLAKHGA 693


>GAU50246.1 hypothetical protein TSUD_188980 [Trifolium subterraneum]
          Length = 458

 Score =  116 bits (290), Expect(2) = 1e-34
 Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 1/218 (0%)
 Frame = -3

Query: 660 FRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKLIREVKI 481
           F T  FF   D     +    GS+A  F   +W AW  QN  CL  E    ++L   ++ 
Sbjct: 210 FITPDFFSSSDAHEWLKFGSTGSQAFAFSTSVWWAWRHQNLMCLQNETWSINRLSFNIQS 269

Query: 480 LVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEW 301
           +   I    + +  T  +E  V W+ +  P  +LNVD S +G+    GFG ++R   G +
Sbjct: 270 MSATITSCFSSRSTTTSEEIHVKWNNNNFPGVILNVDGSCLGSPVRAGFGGVIRNESGFY 329

Query: 300 LVGCYGSI-GSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVY 124
           L G  G I GS + L AE   IY  L+ A       +VCYSDS   + L        HVY
Sbjct: 330 LSGFSGFIQGSSDILLAELFVIYKSLTLAKNMAIDELVCYSDSLHCINLIKGPSIKYHVY 389

Query: 123 VALISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
             LI  IKEL+ +   + L HTLREGNN AD LAK+GA
Sbjct: 390 AVLIQDIKELMSQS-NITLCHTLREGNNCADFLAKLGA 426



 Score = 59.3 bits (142), Expect(2) = 1e-34
 Identities = 28/56 (50%), Positives = 35/56 (62%)
 Frame = -2

Query: 808 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVTDCNLPGQMWQQLGFQDPVFF 641
           N +PT+ +LH R +  S NC RC    EET LHCV DC+L   +W +LGF  P FF
Sbjct: 162 NSVPTLSLLHHRRMNPSSNCPRCC-THEETFLHCVRDCDLSRPIWHRLGFITPDFF 216


>GAU33259.1 hypothetical protein TSUD_333820 [Trifolium subterraneum]
          Length = 284

 Score =  134 bits (338), Expect = 2e-34
 Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 2/226 (0%)
 Frame = -3

Query: 681 RCGNSWDFRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHK 502
           R  NS  F+   FF   D     ++   G  A  FLAG+W  W A+N  C+G   +   K
Sbjct: 35  RIWNSLGFQNSSFFSCSDLELWLRNNSIGLNAPTFLAGLWWNWRARNICCVGNASIHSFK 94

Query: 501 LIREVKILVEAIN--LGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGR 328
           ++ EV  LV  I     + V+  T R          +    VLNVD S +G+ G  GFG 
Sbjct: 95  VVAEVSKLVALIVSCFPAWVRTDTPRV--------CKTDCVVLNVDGSCLGDPGRAGFGG 146

Query: 327 LLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTT 148
           L R  +GEW+ G  G +G      AE   +Y+GL  A E G  R+ CYSDS+  L+L + 
Sbjct: 147 LFRKGDGEWIRGSSGYLGVTNITLAELMAVYHGLKIAREAGYNRLFCYSDSKTVLDLLSK 206

Query: 147 SVSANHVYVALISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
             ++ H Y A+I+ I++LL  +W+V L+H++REGN  AD LAK+G+
Sbjct: 207 ERNSFHCYAAIIANIQDLLVLEWDVSLKHSVREGNFCADFLAKLGS 252


>GAU41508.1 hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score =  110 bits (276), Expect(2) = 5e-34
 Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 1/218 (0%)
 Frame = -3

Query: 660  FRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKLIREVKI 481
            F    FF   D     +    GS+A  F A +W AW  +N  CL  E    ++L   +  
Sbjct: 827  FNDPTFFSFTDAREWLKVGSTGSQAYTFSASVWWAWRHRNLMCLNNESWSLNRLSFNIHS 886

Query: 480  LVEAINLGSTVQHHTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEW 301
            +V+      +         R + W+       +LNVD S +G+    G+G ++R   G +
Sbjct: 887  MVDIFTSSFSSNSDGTSVSRLIKWNNDNFSCVILNVDGSCLGSPVRAGYGGIIRNDSGFY 946

Query: 300  LVGCYGSI-GSPESLQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVY 124
            L G  G I  S + L AE   IY GL+ A +     +VCYSDS L + L    +   HVY
Sbjct: 947  LSGFSGFIRESSDILLAELYAIYQGLTLAKDLVIDELVCYSDSLLCINLIKGPIVKYHVY 1006

Query: 123  VALISAIKELLGRDWEVELQHTLREGNNNADALAKMGA 10
              LI  IKEL+ +   V L HT REGN  AD LAK+GA
Sbjct: 1007 AVLIQDIKELISQS-NVTLCHTFREGNQCADFLAKLGA 1043



 Score = 62.4 bits (150), Expect(2) = 5e-34
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = -2

Query: 808 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVTDCNLPGQMWQQLGFQDPVFF 641
           N +PT+ +L+ R ++ S  CARC G+ EET LHCV DC+    +W  +GF DP FF
Sbjct: 779 NSVPTLSLLNHRKMSNSFICARC-GLQEETFLHCVRDCDFSRNIWHHIGFNDPTFF 833


>GAU17063.1 hypothetical protein TSUD_105620 [Trifolium subterraneum]
          Length = 440

 Score =  136 bits (342), Expect = 1e-33
 Identities = 84/244 (34%), Positives = 120/244 (49%)
 Frame = -3

Query: 741 VKELWKKLFFTV*RTVTYLDRCGNSWDFRTQFFFQH*DFISRHQDAMAGSKAVLFLAGIW 562
           VK LWK + FT                   Q FF   +  +  +         +FLA +W
Sbjct: 185 VKHLWKTIGFT------------------DQTFFHGDNLYAWLRKGCDSPSMFMFLAALW 226

Query: 561 RAWCAQNSKCLGGEDVRCHKLIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAPAHV 382
             W A+N  CL  E V    + R ++     +    + Q  T+   R V W+       +
Sbjct: 227 WIWRARNKLCLANELVSPFTISRCIEDYALLVKKCYSQQKSTLAN-RLVRWNAHDGTDMI 285

Query: 381 LNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWEYG* 202
           LNVD SS+GN    GFG L+R   G W+ G  G+IG    L AE   +Y+GL  AW+   
Sbjct: 286 LNVDGSSIGNPEIYGFGGLIRNSHGAWIRGFAGNIGFSNILHAELLAVYHGLVLAWDMDI 345

Query: 201 RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQHTLREGNNNADALA 22
           + ++CYSDS+ A++L    ++  H + A++  IK++L RDW V + HTLREGN  AD LA
Sbjct: 346 KDLICYSDSKTAIKLIGDPINEWHHFAAILQNIKDILARDWRVTVAHTLREGNACADYLA 405

Query: 21  KMGA 10
           K GA
Sbjct: 406 KFGA 409


>ABD28627.2 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  120 bits (300), Expect(2) = 1e-33
 Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 3/200 (1%)
 Frame = -3

Query: 600  AGSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKLIREVKILVEAINLGSTVQHHTVRQE- 424
            +GS+A+ FLAG+W +W  +N  CL  E     ++   +   + AI   + V+ + ++ + 
Sbjct: 1067 SGSRAITFLAGLWWSWRHRNLMCLSNETWPLTRISFRINDSINAIR-SAFVKSNVIQPDS 1125

Query: 423  -RWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIG-SPESLQAE 250
             R V W+Q     H+LNVD S +G     GFG + R + G +L G  G I  S + L AE
Sbjct: 1126 ARMVKWNQGNHQCHILNVDGSCLGTPIRAGFGGIFRNNVGGYLSGYSGFISESTDILLAE 1185

Query: 249  PTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVE 70
             T ++ GL  A E G   + CYSDS L + L T + S  H Y  LI  IK+LL       
Sbjct: 1186 LTALHQGLIMAAEMGIEELACYSDSLLTINLITRTTSKYHTYAVLIQDIKDLLSAH-NFS 1244

Query: 69   LQHTLREGNNNADALAKMGA 10
            + H  REGN  AD LAK+GA
Sbjct: 1245 VYHCFREGNQCADYLAKLGA 1264



 Score = 52.0 bits (123), Expect(2) = 1e-33
 Identities = 23/56 (41%), Positives = 32/56 (57%)
 Frame = -2

Query: 808  NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVTDCNLPGQMWQQLGFQDPVFF 641
            N  PT+ +LH R +  +  C+RC G  +E+ LHCV DC     +W +LGF    FF
Sbjct: 999  NAAPTLSLLHHRKMAPAATCSRC-GENDESFLHCVRDCKHSAAIWHKLGFVTAAFF 1053


>GAU34195.1 hypothetical protein TSUD_162960 [Trifolium subterraneum]
          Length = 168

 Score =  124 bits (311), Expect = 1e-31
 Identities = 67/136 (49%), Positives = 83/136 (61%)
 Frame = -3

Query: 417 VIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTI 238
           V W+       +LNVD SS+GN G  GFG L+R  +G W+ G  G+IG    L AE   I
Sbjct: 2   VRWNAHGGIGMILNVDGSSIGNPGISGFGGLIRNSDGAWVHGFAGNIGHSNILHAELLAI 61

Query: 237 YYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQHT 58
           Y+GL  AWE   + + CYSDS+ AL+L    V+  H Y A+I  IK+ L R+W V L HT
Sbjct: 62  YHGLVLAWELDIKDLCCYSDSKTALKLIYDHVNEWHHYAAIIYNIKDFLSRNWRVRLVHT 121

Query: 57  LREGNNNADALAKMGA 10
           LREGNN AD LAK GA
Sbjct: 122 LREGNNCADFLAKFGA 137


>GAU48831.1 hypothetical protein TSUD_190610 [Trifolium subterraneum]
          Length = 259

 Score =  126 bits (317), Expect = 1e-31
 Identities = 64/144 (44%), Positives = 88/144 (61%)
 Frame = -3

Query: 441 HTVRQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPES 262
           +++   R V WH        +NVD SS+GN GP GFG LLR   G W+ G  GS G   +
Sbjct: 84  YSISTPRLVSWHPPPENVIKVNVDGSSIGNQGPSGFGGLLRKTFGGWITGFAGSCGFTSN 143

Query: 261 LQAEPTTIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRD 82
           + AE   I +GL  AW +G R ++C SDSQ AL+L    V + H Y  L++ I+ L+ ++
Sbjct: 144 INAELQVILHGLDIAWNHGFRNVICESDSQTALKLIQEGVPSTHPYAPLVNYIQSLIHKE 203

Query: 81  WEVELQHTLREGNNNADALAKMGA 10
           W++ L HTLREGN +AD LAK+GA
Sbjct: 204 WKLFLVHTLREGNASADWLAKLGA 227


>GAU16646.1 hypothetical protein TSUD_325960 [Trifolium subterraneum]
          Length = 157

 Score =  123 bits (308), Expect = 2e-31
 Identities = 65/125 (52%), Positives = 80/125 (64%)
 Frame = -3

Query: 384 VLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTAWEYG 205
           +LNVD SS+GN G  GFG L+R  +G W+ G  G+IG    L AE   IY+GL  AWE  
Sbjct: 2   ILNVDGSSIGNPGISGFGGLIRNSDGAWIHGFAGNIGHSNILHAELLAIYHGLVLAWELD 61

Query: 204 *RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQHTLREGNNNADAL 25
            + + CYSDS+ AL+L    V+  H Y A+I  IK+ L R+W V L HTLREGNN AD L
Sbjct: 62  IKDLCCYSDSKTALKLIYDHVNEWHHYAAIIYNIKDFLSRNWRVRLVHTLREGNNCADFL 121

Query: 24  AKMGA 10
           AK GA
Sbjct: 122 AKFGA 126


>GAU20193.1 hypothetical protein TSUD_352570 [Trifolium subterraneum]
          Length = 171

 Score =  122 bits (307), Expect = 4e-31
 Identities = 62/138 (44%), Positives = 85/138 (61%)
 Frame = -3

Query: 423 RWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPT 244
           RW+ WH SR   +VLNVD S +G  G  GFG L+R  +G W+VG  G +G  ++  AE  
Sbjct: 2   RWISWHPSRQEGYVLNVDGSCLGASGRTGFGGLIRMGDGSWIVGFSGYLGLKDNTFAELM 61

Query: 243 TIYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQ 64
            IY+GL  A + G   I+CYSDSQ  L+L     S  H Y A+I+ I+++L  +W V L 
Sbjct: 62  AIYHGLRIARDLGFSSILCYSDSQTILDLILKGHSIYHCYAAVITNIQDMLKFNWNVTLS 121

Query: 63  HTLREGNNNADALAKMGA 10
           H+LRE N + D LAK+G+
Sbjct: 122 HSLREENFSVDLLAKLGS 139


>GAU23316.1 hypothetical protein TSUD_237700 [Trifolium subterraneum]
          Length = 418

 Score =  103 bits (258), Expect(2) = 5e-31
 Identities = 74/197 (37%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
 Frame = -3

Query: 597 GSKAVLFLAGIWRAWCAQNSKCLGGEDVRCHKLIREVKILVEAINLGSTVQHHTVRQERW 418
           GSKA +F AG+W +W   N  CL  E                           T   +R 
Sbjct: 218 GSKAFIFSAGVWWSWRNHNLMCLNNE---------------------------TWTVDRV 250

Query: 417 VIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEPTT 241
           V W+ +     +LNVDES +G+    GFG + R   G +L G  G I GS + + AEP  
Sbjct: 251 VKWNNNNFSGVILNVDESCLGSPIRSGFGGIFRNDSGFYLSGFSGFIQGSSDIMLAEPYA 310

Query: 240 IYYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQH 61
           IY+GLS A +      VCYSDS   + L T      HV+  LI  IKE L  +  V L H
Sbjct: 311 IYHGLSLAEDMEINEFVCYSDSLHRINLITGLTLKYHVHAVLIQDIKEFLS-NRNVSLCH 369

Query: 60  TLREGNNNADALAKMGA 10
           TL EGN  AD  AK GA
Sbjct: 370 TLGEGNQCADFFAKHGA 386



 Score = 59.3 bits (142), Expect(2) = 5e-31
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = -2

Query: 808 NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVTDCNLPGQMWQQLGFQDPVFFPTL 632
           N +PT+ +L  R +  S  CARC G+ EET LHCV DC+    +W  +GF +P FF ++
Sbjct: 149 NSVPTLSLLDHRKMNLSATCARC-GLREETFLHCVRDCDFSISIWHHIGFDNPDFFSSM 206


>GAU10666.1 hypothetical protein TSUD_425710, partial [Trifolium subterraneum]
          Length = 157

 Score =  121 bits (304), Expect = 8e-31
 Identities = 66/136 (48%), Positives = 83/136 (61%)
 Frame = -3

Query: 417 VIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTI 238
           V W+       +LNVD SS+GN G  GFG L+R  +  W+ G  G+IG    L AE   I
Sbjct: 2   VRWNAHGGIRMILNVDGSSIGNPGISGFGGLIRNSDRAWVHGFAGNIGHSNILHAELLAI 61

Query: 237 YYGLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQHT 58
           Y+GL  AWE   + + CYSDS+ AL+L    V+  H Y A+I  IK++L R+W V L HT
Sbjct: 62  YHGLVLAWELDIKDLYCYSDSKTALKLIYDHVNEWHHYAAIIYNIKDILSRNWRVRLVHT 121

Query: 57  LREGNNNADALAKMGA 10
           LREGNN AD LAK GA
Sbjct: 122 LREGNNCADFLAKFGA 137


>GAU23820.1 hypothetical protein TSUD_27290 [Trifolium subterraneum]
          Length = 168

 Score =  121 bits (304), Expect = 1e-30
 Identities = 63/134 (47%), Positives = 83/134 (61%)
 Frame = -3

Query: 411 WHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYY 232
           W+       +LNVD SS+GN G  GFG L+R  +G W+ G  G+IG    L AE   +Y+
Sbjct: 4   WNAHGGIGMILNVDGSSIGNPGISGFGGLIRNSDGTWVHGFAGNIGFSNILHAELLAVYH 63

Query: 231 GLSTAWEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQHTLR 52
           GL   WE   + + CYSDS+ A++L +  V+  H Y A+I  IK+LL R+W V+L HTLR
Sbjct: 64  GLVLVWELNIKDLWCYSDSRTAIKLLSNHVNEWHHYAAIIYNIKDLLTRNWRVKLMHTLR 123

Query: 51  EGNNNADALAKMGA 10
           EGN  AD LAK GA
Sbjct: 124 EGNTCADFLAKFGA 137


>GAU49781.1 hypothetical protein TSUD_188300 [Trifolium subterraneum]
          Length = 221

 Score =  123 bits (308), Expect = 1e-30
 Identities = 74/190 (38%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
 Frame = -3

Query: 567 IWRAWCAQNSKCLGGEDVRCHKLIREVKILVEAIN--LGSTVQHHTVRQE-RWVIWHQSR 397
           +W  WCA+N              + ++  L +A     GST    T     R V W +  
Sbjct: 1   MWVIWCARNEFIFDNHRQSVVTSVIKIDSLQQACAAAFGSTQTIATQSSNPRLVTWARPM 60

Query: 396 APAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIGSPESLQAEPTTIYYGLSTA 217
                LNVD S +G+L   G+G LLR H GE+++G YG+      L AE   + +GL+  
Sbjct: 61  EGTICLNVDGSLLGSLNSAGYGGLLRNHNGEFILGFYGTTSLKSILFAEIMAVLHGLTIC 120

Query: 216 WEYG*RRIVCYSDSQLALELSTTSVSANHVYVALISAIKELLGRDWEVELQHTLREGNNN 37
           WE G R+I C SDS   + L  + VS +H +   I +I++L+ RDWEV L HTLREGN  
Sbjct: 121 WENGYRKINCLSDSLQVVNLIRSGVSPHHRFANEILSIRQLITRDWEVVLSHTLREGNLC 180

Query: 36  ADALAKMGAL 7
           AD LAKMGA+
Sbjct: 181 ADVLAKMGAV 190