BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza35_contig00015478
         (1745 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_003516775.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   624   0.0  
XP_006573909.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   619   0.0  
XP_004511295.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   611   0.0  
BAU00859.1 hypothetical protein VIGAN_10249400 [Vigna angularis ...   610   0.0  
XP_017406706.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   609   0.0  
KYP45099.1 hypothetical protein KK1_033381 [Cajanus cajan]            607   0.0  
XP_014520097.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   604   0.0  
XP_013453291.1 RNA pseudouridine synthase [Medicago truncatula] ...   593   0.0  
XP_007157229.1 hypothetical protein PHAVU_002G053600g [Phaseolus...   589   0.0  
XP_015958450.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   574   0.0  
XP_016197034.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   568   0.0  
XP_019441369.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   555   0.0  
GAU29527.1 hypothetical protein TSUD_115490 [Trifolium subterran...   541   0.0  
GAV62308.1 PseudoU_synth_2 domain-containing protein [Cephalotus...   535   0.0  
XP_010096290.1 RNA pseudourine synthase 4 [Morus notabilis] EXB6...   528   0.0  
XP_014633041.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   525   0.0  
XP_014633042.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   525   0.0  
XP_013453292.1 RNA pseudouridine synthase [Medicago truncatula] ...   524   0.0  
XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   527   e-180
XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus t...   522   e-179

>XP_003516775.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Glycine max] KHN30421.1 RNA pseudourine synthase 4,
            mitochondrial [Glycine soja] KRH77957.1 hypothetical
            protein GLYMA_01G244300 [Glycine max]
          Length = 427

 Score =  624 bits (1610), Expect = 0.0
 Identities = 316/409 (77%), Positives = 350/409 (85%), Gaps = 1/409 (0%)
 Frame = +3

Query: 195  SVTRQ-SDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLR 371
            +VTR   DKWLTLPPV+A+ S+S+  NQL SST  TALKWV+RCCPHLP+ALVHKLFRLR
Sbjct: 22   AVTRPWEDKWLTLPPVSASSSASVELNQL-SSTPTTALKWVVRCCPHLPRALVHKLFRLR 80

Query: 372  RVRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIRSL 551
            +VR+ PA + +Q QT KRVAAKDTLN+GDRI LP SV+   TP     +T ++INFIR+L
Sbjct: 81   QVRIHPA-TVIQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIRTL 138

Query: 552  VIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILV 731
            VIYKDPAILVLNKPPG+PVQGG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGILV
Sbjct: 139  VIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILV 198

Query: 732  MGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVV 911
            MGRT TS  VLHSIFRE+TSRASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGKVV
Sbjct: 199  MGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVV 258

Query: 912  VDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVL 1091
            VDNG+SDRITIVDNSTL+SSQHAITEY+VI SSS GYTWLEL+PLTGRKHQLRVHCAEVL
Sbjct: 259  VDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVL 318

Query: 1092 GTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHL 1271
            GTPIVGDYKYGWQAHRKWGHFDL N              LPFGLNLNKGSISE HPRLHL
Sbjct: 319  GTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRLHL 377

Query: 1272 HCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            HCKQ+VLPNI QALQNVQSAS+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 378  HCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 426


>XP_006573909.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Glycine max] KRH77956.1 hypothetical protein
            GLYMA_01G244300 [Glycine max]
          Length = 429

 Score =  619 bits (1597), Expect = 0.0
 Identities = 316/411 (76%), Positives = 350/411 (85%), Gaps = 3/411 (0%)
 Frame = +3

Query: 195  SVTRQ-SDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLR 371
            +VTR   DKWLTLPPV+A+ S+S+  NQL SST  TALKWV+RCCPHLP+ALVHKLFRLR
Sbjct: 22   AVTRPWEDKWLTLPPVSASSSASVELNQL-SSTPTTALKWVVRCCPHLPRALVHKLFRLR 80

Query: 372  RVRMLPAASAVQDQTLKRV--AAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIR 545
            +VR+ PA + +Q QT KRV  AAKDTLN+GDRI LP SV+   TP     +T ++INFIR
Sbjct: 81   QVRIHPA-TVIQQQTFKRVRVAAKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIR 138

Query: 546  SLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGI 725
            +LVIYKDPAILVLNKPPG+PVQGG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGI
Sbjct: 139  TLVIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGI 198

Query: 726  LVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGK 905
            LVMGRT TS  VLHSIFRE+TSRASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGK
Sbjct: 199  LVMGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGK 258

Query: 906  VVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCAE 1085
            VVVDNG+SDRITIVDNSTL+SSQHAITEY+VI SSS GYTWLEL+PLTGRKHQLRVHCAE
Sbjct: 259  VVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAE 318

Query: 1086 VLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRL 1265
            VLGTPIVGDYKYGWQAHRKWGHFDL N              LPFGLNLNKGSISE HPRL
Sbjct: 319  VLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRL 377

Query: 1266 HLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            HLHCKQ+VLPNI QALQNVQSAS+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 378  HLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 428


>XP_004511295.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Cicer
            arietinum]
          Length = 458

 Score =  611 bits (1576), Expect = 0.0
 Identities = 310/418 (74%), Positives = 351/418 (83%), Gaps = 6/418 (1%)
 Frame = +3

Query: 186  CHFSVTRQSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFR 365
            CH S      KWLTLP V+ATV SS  +N++ SS+S TALKWV +CCP +PK LVHKLFR
Sbjct: 47   CHMSA--DDAKWLTLPAVSATVKSS--SNEVSSSSSTTALKWVTQCCPQIPKTLVHKLFR 102

Query: 366  LRRVRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREM----PTPKLECRVTAKEI 533
            LR+VRMLP +  + D+ LKRV AKDTLNSGDRIFLP+SV++      TPK    +T K+I
Sbjct: 103  LRQVRMLPNSPLIADK-LKRVGAKDTLNSGDRIFLPNSVKQQHQHQQTPKQPLTLTPKQI 161

Query: 534  NFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRD 713
             F+RSLVIYKDPA +VLNKPPG+PVQGG+N+K SLD +AA+ LNY+ S+PPRLVHRLDRD
Sbjct: 162  KFMRSLVIYKDPATVVLNKPPGMPVQGGINIKWSLDALAASSLNYDYSQPPRLVHRLDRD 221

Query: 714  CSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTA 893
            CSGILVMGRTQTS  VLHSIFR++TSRASD   TEK+ILQRRYWALVIG PRRS GL+T+
Sbjct: 222  CSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDTEKRILQRRYWALVIGRPRRSGGLITS 281

Query: 894  PLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRV 1073
            PLGKVVVDNGKSDRITIV+NSTL+SSQHA+TEY+V+GSSS GYTWLELSPLTGRKHQLRV
Sbjct: 282  PLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRVLGSSSDGYTWLELSPLTGRKHQLRV 341

Query: 1074 HCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEK 1253
            HCAEVLGTPIVGDYKYGWQAH+KWGHFDL N              LPFGLNLNKGSIS+K
Sbjct: 342  HCAEVLGTPIVGDYKYGWQAHKKWGHFDLCN-LEDSTEELLKEETLPFGLNLNKGSISDK 400

Query: 1254 HPRLHLHCKQIVLPNIFQALQNVQ--SASNYDLSVVEALNLEADLPPYMRRSWDVTNS 1421
            HPRLHLHCKQI+LPNI QALQ+VQ  SASN DLSVVEAL LEA+LPPYM+RSWDVTNS
Sbjct: 401  HPRLHLHCKQIILPNISQALQDVQSLSASNCDLSVVEALKLEAELPPYMQRSWDVTNS 458


>BAU00859.1 hypothetical protein VIGAN_10249400 [Vigna angularis var. angularis]
          Length = 440

 Score =  610 bits (1574), Expect = 0.0
 Identities = 312/414 (75%), Positives = 345/414 (83%), Gaps = 9/414 (2%)
 Frame = +3

Query: 204  RQSDKWLTLPPVTATVSSSL------AANQLCSSTSPTALKWVLRCCPHLPKALVHKLFR 365
            ++ +KWLTLPPV A+ +  +        NQL SSTS TALKW++RCCP+LP +L+HKLFR
Sbjct: 28   QREEKWLTLPPVAASATVEVNGKRKGKGNQL-SSTSTTALKWIVRCCPNLPISLLHKLFR 86

Query: 366  LRRVRML-PAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTP--KLECRVTAKEIN 536
            LR+VR+L P    +Q QTLKRVAAK TLN+GDRI LP SV++ PTP  K    +T ++IN
Sbjct: 87   LRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPLTPQQIN 146

Query: 537  FIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDC 716
            FIR+LVIYKDPAILVLNKPPG+PVQGG+N+K SLDVVAAACLNYE SEPPRLVHRLDRDC
Sbjct: 147  FIRTLVIYKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDC 206

Query: 717  SGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAP 896
            SGILVMGRTQTS  VLHSIFRE+TSRA D+ G EK+ILQRRYWALV+GCPRRS+GLVTA 
Sbjct: 207  SGILVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSKGLVTAS 266

Query: 897  LGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVH 1076
            LGKVVVDNGKS+RIT+VDNS  LSSQHAITEY+VI SSS GYTWLELSPLTGRKHQLRVH
Sbjct: 267  LGKVVVDNGKSERITVVDNSASLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVH 326

Query: 1077 CAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKH 1256
            CAEVLGTPIVGDYKYGWQAHRKWG FDLSN              LPFGLNLN GSISE H
Sbjct: 327  CAEVLGTPIVGDYKYGWQAHRKWGGFDLSN-VEDSCEELLKEETLPFGLNLNNGSISENH 385

Query: 1257 PRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            PRLHLHCKQIVLPNI QALQNVQS SN DLS VE L L ADLPPYM+RSWDVTN
Sbjct: 386  PRLHLHCKQIVLPNISQALQNVQSFSNCDLSQVEGLELVADLPPYMQRSWDVTN 439


>XP_017406706.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Vigna
            angularis] KOM26639.1 hypothetical protein
            LR48_Vigan303s006100 [Vigna angularis]
          Length = 440

 Score =  609 bits (1570), Expect = 0.0
 Identities = 312/414 (75%), Positives = 344/414 (83%), Gaps = 9/414 (2%)
 Frame = +3

Query: 204  RQSDKWLTLPPVTATVSSSL------AANQLCSSTSPTALKWVLRCCPHLPKALVHKLFR 365
            ++ +KWLTLPPV A+ +  +        NQL SSTS TALKW++RCCP+LP +L+HKLFR
Sbjct: 28   QREEKWLTLPPVAASATVEVNGKRKGKGNQL-SSTSTTALKWIVRCCPNLPISLLHKLFR 86

Query: 366  LRRVRML-PAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTP--KLECRVTAKEIN 536
            LR+VR+L P    +Q QTLKRVAAK TLN+GDRI LP SV++ PTP  K    +T ++IN
Sbjct: 87   LRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPLTPQQIN 146

Query: 537  FIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDC 716
            FIR+LVIYKDPAILVLNKPPG PVQGG+N+K SLDVVAAACLNYE SEPPRLVHRLDRDC
Sbjct: 147  FIRTLVIYKDPAILVLNKPPGSPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDC 206

Query: 717  SGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAP 896
            SGILVMGRTQTS  VLHSIFRE+TSRA D+ G EK+ILQRRYWALV+GCPRRS+GLVTA 
Sbjct: 207  SGILVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSKGLVTAS 266

Query: 897  LGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVH 1076
            LGKVVVDNGKS+RIT+VDNS  LSSQHAITEY+VI SSS GYTWLELSPLTGRKHQLRVH
Sbjct: 267  LGKVVVDNGKSERITVVDNSASLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVH 326

Query: 1077 CAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKH 1256
            CAEVLGTPIVGDYKYGWQAHRKWG FDLSN              LPFGLNLN GSISE H
Sbjct: 327  CAEVLGTPIVGDYKYGWQAHRKWGGFDLSN-VEDSCEELLKEETLPFGLNLNNGSISENH 385

Query: 1257 PRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            PRLHLHCKQIVLPNI QALQNVQS SN DLS VE L L ADLPPYM+RSWDVTN
Sbjct: 386  PRLHLHCKQIVLPNISQALQNVQSFSNCDLSQVEGLELVADLPPYMQRSWDVTN 439


>KYP45099.1 hypothetical protein KK1_033381 [Cajanus cajan]
          Length = 403

 Score =  607 bits (1564), Expect = 0.0
 Identities = 299/383 (78%), Positives = 332/383 (86%)
 Frame = +3

Query: 270  NQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLRRVRMLPAASAVQDQTLKRVAAKDTLN 449
            NQ+ SST  TALKWV+RCCP+LP+ALVHKLFRLR+VR+L  +S     T KRVAAKDTLN
Sbjct: 22   NQI-SSTPTTALKWVVRCCPNLPRALVHKLFRLRQVRILSPSSHSHHPTFKRVAAKDTLN 80

Query: 450  SGDRIFLPHSVREMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVK 629
            +GDRI LP SV++ PT K    +T+++INFIR+LVIYKDPAILVLNKPPG+PVQGG+N+K
Sbjct: 81   TGDRILLPQSVKQTPTHKHHSHLTSQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIK 140

Query: 630  RSLDVVAAACLNYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASDET 809
            RSLDVVAA+ LNYE SEPPRLVHRLDRDCSGILVMGRTQ SA +LHSIFRE+TSRA ++ 
Sbjct: 141  RSLDVVAASSLNYEYSEPPRLVHRLDRDCSGILVMGRTQASATLLHSIFREKTSRALNDI 200

Query: 810  GTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITE 989
            G EK+ILQR+YWALV+GCPRR +GLVTA LGKVVVDNG+SDRITIVDNST++SSQHAITE
Sbjct: 201  GKEKRILQRKYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTIMSSQHAITE 260

Query: 990  YQVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNP 1169
            Y+VI SSS GYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSN 
Sbjct: 261  YRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNV 320

Query: 1170 XXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLS 1349
                         LPFGLNL KGSISE HPRLHLHCKQIVLPNI QALQNVQSASN DLS
Sbjct: 321  DDSREEELLKEETLPFGLNLKKGSISENHPRLHLHCKQIVLPNISQALQNVQSASNCDLS 380

Query: 1350 VVEALNLEADLPPYMRRSWDVTN 1418
            +VE L L ADLPPYM+RSWDVTN
Sbjct: 381  LVEGLELAADLPPYMQRSWDVTN 403


>XP_014520097.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Vigna radiata
            var. radiata]
          Length = 440

 Score =  604 bits (1558), Expect = 0.0
 Identities = 312/420 (74%), Positives = 343/420 (81%), Gaps = 10/420 (2%)
 Frame = +3

Query: 189  HFSVTRQ-SDKWLTLPPVTATVSSSL------AANQLCSSTSPTALKWVLRCCPHLPKAL 347
            H S  RQ  +KWLTLPPV AT +  +        NQL SSTS TALKW++RCCP+LP +L
Sbjct: 22   HLSAGRQLEEKWLTLPPVAATATVEVNGKRKGKGNQL-SSTSTTALKWIVRCCPNLPISL 80

Query: 348  VHKLFRLRRVRML-PAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTP--KLECRV 518
            +HKLFRLR+VR+L P    +Q QTLKRVAAK TLN+GDRI LP SV++ PTP  K    +
Sbjct: 81   LHKLFRLRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPL 140

Query: 519  TAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVH 698
            T ++INFIR  VI+KDPAILVLNKPPG+PVQGG+N+K SLD VAAACLNYE SEPPRLVH
Sbjct: 141  TPQQINFIRKFVIFKDPAILVLNKPPGMPVQGGINIKHSLDAVAAACLNYEYSEPPRLVH 200

Query: 699  RLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSR 878
            RLDRDCSG+LVMGRTQTS  VLHSIFRE+TSRA D+ G EK+ILQRRYWALV+GCPRRS+
Sbjct: 201  RLDRDCSGLLVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSK 260

Query: 879  GLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRK 1058
            GLVTA LGKVVVDNGKSDRIT+VDNS  LSSQHAITEY+VI SSS GYTWLELSPLTGRK
Sbjct: 261  GLVTASLGKVVVDNGKSDRITVVDNSASLSSQHAITEYRVIASSSQGYTWLELSPLTGRK 320

Query: 1059 HQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKG 1238
            HQLRVHCAEVLGTPIVGDYKYGWQAHR+WG FDLSN              LPFGLNLN G
Sbjct: 321  HQLRVHCAEVLGTPIVGDYKYGWQAHRQWGGFDLSN-VEDSCEELFKEETLPFGLNLNNG 379

Query: 1239 SISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            SISE HPRLHLHCKQIVLPNI QALQNVQS SN DLS VE L L ADLP YM+RSWDVTN
Sbjct: 380  SISENHPRLHLHCKQIVLPNISQALQNVQSFSNCDLSQVERLELVADLPLYMQRSWDVTN 439


>XP_013453291.1 RNA pseudouridine synthase [Medicago truncatula] KEH27321.1 RNA
            pseudouridine synthase [Medicago truncatula]
          Length = 430

 Score =  593 bits (1530), Expect = 0.0
 Identities = 306/419 (73%), Positives = 341/419 (81%), Gaps = 10/419 (2%)
 Frame = +3

Query: 195  SVTRQSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLRR 374
            S   +  KWLTLPPV+ TV++S       SSTS  ALKWV+RCCP LPK L+HKLFRL++
Sbjct: 21   SAVAEDGKWLTLPPVSTTVNTS------SSSTSTPALKWVIRCCPELPKTLIHKLFRLKQ 74

Query: 375  VRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREM----PTP---KLECRVTAKEI 533
            VRMLP      D   KRV  KDTLNSGDRIFLP+SV++     PTP   +    +TAK+I
Sbjct: 75   VRMLPRQQ--DDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPLTLTAKQI 132

Query: 534  NFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRD 713
            NFIRSLVIYKDP ILVLNKPPG+PVQGG+N+K SLD VAA  LNY+ S+PPRLVHRLDRD
Sbjct: 133  NFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRD 192

Query: 714  CSGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRRYWALVIGCPRRSRGLVT 890
            CSGILVMGRT+TS A+LHSIFRE+TSRAS +E  TEK ILQRRYWALV+GCPRRS G+V 
Sbjct: 193  CSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPRRSGGVVN 252

Query: 891  APLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLR 1070
            APLGKVVVDNGKSDRITIVDNS LLSSQHA+TEY+VI SSSHG+TWLELSPLTGRKHQLR
Sbjct: 253  APLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLR 312

Query: 1071 VHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISE 1250
            VHCAEVLGTPIVGDYKYG QAH+KWG FD SN              LPFGLNLNKGSIS+
Sbjct: 313  VHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSN-LEDSTEEHLKEEALPFGLNLNKGSISD 371

Query: 1251 KHPRLHLHCKQIVLPNIFQALQNVQSA--SNYDLSVVEALNLEADLPPYMRRSWDVTNS 1421
            KHPRLHLHCKQIVLPNI QALQNVQS   S+YDLS VE+L LEADLPPYM++SW+VTNS
Sbjct: 372  KHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPYMKKSWEVTNS 430


>XP_007157229.1 hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
            ESW29223.1 hypothetical protein PHAVU_002G053600g
            [Phaseolus vulgaris]
          Length = 432

 Score =  589 bits (1518), Expect = 0.0
 Identities = 302/409 (73%), Positives = 335/409 (81%), Gaps = 7/409 (1%)
 Frame = +3

Query: 213  DKWLTLPPVTATVSSSLAANQL-----CSSTSPTALKWVLRCCPHLPKALVHKLFRLRRV 377
            +KWLTLPPV A+ S  +           SST  TALKW++RCCP  P +L+HKLFRLR+V
Sbjct: 27   EKWLTLPPVAASGSVEVKGKTKGKGNEVSSTPTTALKWIVRCCPSAPISLLHKLFRLRQV 86

Query: 378  RMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTP--KLECRVTAKEINFIRSL 551
            R+L   S    +TLKRVAAKDTLNSGDRI LP SV++ PTP  K    +T ++INFIR+L
Sbjct: 87   RVL---SPPHTETLKRVAAKDTLNSGDRILLPQSVQQKPTPTRKPHSSLTPQQINFIRTL 143

Query: 552  VIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILV 731
            VI+KDPAILVLNKPPG+PVQGG+N+K SLDVVAAACLNYE SEPPRLVHRLDRDCSGILV
Sbjct: 144  VIHKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILV 203

Query: 732  MGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVV 911
            MGRTQTS  VLHSIFRE+TSRA D+T  EK+ILQRRYWALV+G PR S+GLVTA LGKVV
Sbjct: 204  MGRTQTSTTVLHSIFREKTSRALDDTEEEKRILQRRYWALVLGRPRCSKGLVTASLGKVV 263

Query: 912  VDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVL 1091
            VDNGKSDRIT+VDNST LSSQHAITEY+VI SSS GYTWLELSPLTGRKHQLRVHCAEVL
Sbjct: 264  VDNGKSDRITVVDNSTSLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVL 323

Query: 1092 GTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHL 1271
            GTPIVGDYKYGWQAHRKWG+FDLSN              LPFGLNLN GSISE  PRLHL
Sbjct: 324  GTPIVGDYKYGWQAHRKWGNFDLSN-VEDSCEEHLKEETLPFGLNLNNGSISENRPRLHL 382

Query: 1272 HCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            HCK+IVLPNI +ALQNVQS SN DLS VE L L ADLPPYM+RSWD+T+
Sbjct: 383  HCKKIVLPNISEALQNVQSFSNCDLSQVEGLQLVADLPPYMQRSWDITS 431


>XP_015958450.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Arachis
            duranensis]
          Length = 421

 Score =  574 bits (1480), Expect = 0.0
 Identities = 293/412 (71%), Positives = 336/412 (81%), Gaps = 1/412 (0%)
 Frame = +3

Query: 189  HFSVTRQSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRL 368
            HFS+T  ++KW TLPP + T +S   +    +S S TALKWVLRCCPHLPK LVHKLFRL
Sbjct: 22   HFSITNNNNKWHTLPPFSPTPTSLSPS----ASASTTALKWVLRCCPHLPKPLVHKLFRL 77

Query: 369  RRVRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTP-KLECRVTAKEINFIR 545
            R+VR   + + +     KRVAAKDTLNSGD IFLP SV+ +PT  K    +T  +I F+R
Sbjct: 78   RQVRRSSSPTII-----KRVAAKDTLNSGDTIFLPLSVKHIPTEVKRHSDLTPHQIQFVR 132

Query: 546  SLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGI 725
            SLV+YKDPA+LVLNKPPG+PVQGG+N+KRSLDV+AAACLN+E  + PRLVHRLDRDCSGI
Sbjct: 133  SLVLYKDPAVLVLNKPPGMPVQGGINIKRSLDVLAAACLNFEYPDSPRLVHRLDRDCSGI 192

Query: 726  LVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGK 905
            LVMGRTQTSA +LHSIFRE+TS ASD+   E +ILQRRY ALVIGCPRR RGL+TA LGK
Sbjct: 193  LVMGRTQTSATILHSIFREKTSTASDDIDAENRILQRRYIALVIGCPRRPRGLITASLGK 252

Query: 906  VVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCAE 1085
            VVVDNGKSDRIT+VDNSTLLSSQHAITEY VIGSSSHGYTWLEL PLTGRKHQLRVHCAE
Sbjct: 253  VVVDNGKSDRITVVDNSTLLSSQHAITEYHVIGSSSHGYTWLELYPLTGRKHQLRVHCAE 312

Query: 1086 VLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRL 1265
            VLGTPIVGDYKYGWQAHRK+GH +LS+             +LPFGL +NKGSISE+ PRL
Sbjct: 313  VLGTPIVGDYKYGWQAHRKFGHDNLSD--VDSSEELCKEEMLPFGLTMNKGSISERCPRL 370

Query: 1266 HLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTNS 1421
            HLHCKQIVLPNI++ALQ+VQS  +YDL+ V  L L A LPPYM+RSWD+TNS
Sbjct: 371  HLHCKQIVLPNIYRALQDVQS-PHYDLNQVGNLALTAPLPPYMQRSWDITNS 421


>XP_016197034.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Arachis
            ipaensis]
          Length = 423

 Score =  568 bits (1465), Expect = 0.0
 Identities = 295/416 (70%), Positives = 336/416 (80%), Gaps = 5/416 (1%)
 Frame = +3

Query: 189  HFSVTR----QSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHK 356
            HFS+TR     ++KW TLPP + T +S      L +S S TALKWVLRCCPHLPK LVHK
Sbjct: 22   HFSITRLLPDNNNKWHTLPPFSPTPTS------LSASASTTALKWVLRCCPHLPKPLVHK 75

Query: 357  LFRLRRVRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLE-CRVTAKEI 533
            LFRLR+VR   + + +     KRVAAKDTLNSGD IFLP SV+ +PT K     +T ++I
Sbjct: 76   LFRLRQVRRSSSPTII-----KRVAAKDTLNSGDTIFLPLSVKHIPTEKKRHSDLTPQQI 130

Query: 534  NFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRD 713
             F+RSLV+YKDPA+LVLNKPPG+PVQGG N+KRSLDV+AAACLN+E  + PRLVHRLDRD
Sbjct: 131  QFVRSLVLYKDPAVLVLNKPPGMPVQGGTNIKRSLDVLAAACLNFEYPDSPRLVHRLDRD 190

Query: 714  CSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTA 893
            CSGILVMGRTQTSA +LHSIFRE+TS ASD+   E +ILQRRY ALVIGCPRR RGL+TA
Sbjct: 191  CSGILVMGRTQTSATILHSIFREKTSTASDDIDAENRILQRRYIALVIGCPRRPRGLITA 250

Query: 894  PLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRV 1073
             LGKVVVDNGKSDRITIVDNSTLLSSQHAITEY VIGSSSHGYTWLEL PLTGRKHQLRV
Sbjct: 251  SLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYHVIGSSSHGYTWLELYPLTGRKHQLRV 310

Query: 1074 HCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEK 1253
            HCAEVLGTPIVGDYKYGWQAHRK+G  +LS+             +LPFGL +NKGSISE+
Sbjct: 311  HCAEVLGTPIVGDYKYGWQAHRKFGPDNLSD--VDSSEELCKEEMLPFGLTMNKGSISER 368

Query: 1254 HPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTNS 1421
             PRLHLHCKQIVLPNI++ALQ+VQS  +YDL+ V  L L A LPPYM+RSWD+TNS
Sbjct: 369  CPRLHLHCKQIVLPNIYRALQDVQS-PHYDLNQVGNLALTAPLPPYMQRSWDITNS 423


>XP_019441369.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Lupinus
            angustifolius] XP_019444510.1 PREDICTED: RNA
            pseudouridine synthase 4, mitochondrial-like [Lupinus
            angustifolius]
          Length = 412

 Score =  555 bits (1430), Expect = 0.0
 Identities = 279/414 (67%), Positives = 324/414 (78%), Gaps = 10/414 (2%)
 Frame = +3

Query: 210  SDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLRRVRMLP 389
            S KWLTLPP   T+ +    NQ+ S ++ TALKWV RCCP +PK LVHKLFRLR+VR  P
Sbjct: 3    SSKWLTLPPFIPTLVNVKNGNQISSPSTITALKWVTRCCPQIPKTLVHKLFRLRQVRTQP 62

Query: 390  AASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLECR--------VTAKEINFIR 545
                    + KR++ KDTLNSGD IFLP SV++ P P  + +        +T K+INFIR
Sbjct: 63   P----NHTSFKRLSPKDTLNSGDLIFLPQSVKQTPPPTHKHKHLSHSHPPLTDKQINFIR 118

Query: 546  SLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGI 725
            +L+IYKDPA+LVLNKPPGLPVQGG+N+K SLDV+AAA LNY+ SEPPRLVHRLDRDCSGI
Sbjct: 119  TLLIYKDPALLVLNKPPGLPVQGGINIKHSLDVLAAASLNYDYSEPPRLVHRLDRDCSGI 178

Query: 726  LVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGK 905
            LVM RT TSA +LHSIFR++TS AS    T+K ILQRRYWA+VIGCPRR +GLVTA LGK
Sbjct: 179  LVMARTHTSATILHSIFRDKTSTASHNIATDKTILQRRYWAMVIGCPRRPKGLVTASLGK 238

Query: 906  VVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCAE 1085
            VVVDNGKSDRIT+VD ST +SSQHA+TEY+VIGSSS+GYTWLELSPLTGRKHQLRVHCAE
Sbjct: 239  VVVDNGKSDRITVVDKSTSVSSQHAVTEYKVIGSSSNGYTWLELSPLTGRKHQLRVHCAE 298

Query: 1086 VLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRL 1265
            VLGTPIVGDYKYGWQAH+KWG F+                +LPFGLN+ KGSI EK PRL
Sbjct: 299  VLGTPIVGDYKYGWQAHKKWGLFEDEEDSSEELLKEETETLLPFGLNMKKGSICEKRPRL 358

Query: 1266 HLHCKQIVLPNIFQALQNVQSAS--NYDLSVVEALNLEADLPPYMRRSWDVTNS 1421
            HLHCKQIVLPNI ++LQNV+S S  + DL  VE+L L A LPPYM+RSW+ TNS
Sbjct: 359  HLHCKQIVLPNICESLQNVESGSSRSCDLLGVESLELVAALPPYMQRSWEFTNS 412


>GAU29527.1 hypothetical protein TSUD_115490 [Trifolium subterraneum]
          Length = 354

 Score =  541 bits (1394), Expect = 0.0
 Identities = 274/355 (77%), Positives = 302/355 (85%), Gaps = 8/355 (2%)
 Frame = +3

Query: 381  MLPAASAV----QDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLEC--RVTAKEINFI 542
            MLP+ S      QD   KRV  KD+LNSGDRIFLPHSV+++  PK +    +TAK+INFI
Sbjct: 1    MLPSLSLSPSQQQDHKFKRVTPKDSLNSGDRIFLPHSVKQITPPKHDSPLTLTAKQINFI 60

Query: 543  RSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSG 722
            R+LVIYKDP ILVLNKPPG+PVQGG+N+KRSLD VAA CLNY+ SEPPRLVHRLDRDCSG
Sbjct: 61   RTLVIYKDPHILVLNKPPGMPVQGGINIKRSLDAVAAECLNYDYSEPPRLVHRLDRDCSG 120

Query: 723  ILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLG 902
            ILVMGRT+TS  +LHSIFR++TS ASD+ GT+++ILQRRYWALV+GCPRRS GLVTAPLG
Sbjct: 121  ILVMGRTKTSTTLLHSIFRDKTSTASDDIGTKRRILQRRYWALVLGCPRRSGGLVTAPLG 180

Query: 903  KVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCA 1082
            KVVVDNGKSDRITIVDN T LSSQHAITEY+VIGSSSHGYTWLELSPLTGRKHQLRVHCA
Sbjct: 181  KVVVDNGKSDRITIVDNPTSLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCA 240

Query: 1083 EVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPR 1262
            EVLGTPIVGDYKYG QAH+KWG FDLSN              LPFGLNLNKG IS+KHPR
Sbjct: 241  EVLGTPIVGDYKYGRQAHKKWGQFDLSN-LEDTTEELLKEEALPFGLNLNKGCISDKHPR 299

Query: 1263 LHLHCKQIVLPNIFQALQNVQSASN--YDLSVVEALNLEADLPPYMRRSWDVTNS 1421
            LHLHCKQIVLPNI QALQNVQS S+  YDLS VEAL LEADLPPYM++SWDVTNS
Sbjct: 300  LHLHCKQIVLPNISQALQNVQSLSDSTYDLSEVEALELEADLPPYMKKSWDVTNS 354


>GAV62308.1 PseudoU_synth_2 domain-containing protein [Cephalotus follicularis]
          Length = 467

 Score =  535 bits (1377), Expect = 0.0
 Identities = 265/428 (61%), Positives = 324/428 (75%), Gaps = 19/428 (4%)
 Frame = +3

Query: 195  SVTRQSDKWLTLPPVTATVSSSLAANQLC-----------SSTSPTALKWVLRCCPHLPK 341
            S  R+  KW  +PP T  ++ S   ++L            +++  TA+KWVL+CCP LP+
Sbjct: 41   STQRRGGKWFPVPPFTHAINGSALGSELARGGGGASASKAAASETTAIKWVLKCCPELPR 100

Query: 342  ALVHKLFRLRRVRMLPAASAVQD-------QTLKRVAAKDTLNSGDRIFLPHSVREMPTP 500
            +LV KLFRLR+VR   A     D         LKRVAAKD LN GD+IFLP SV+E+P+ 
Sbjct: 101  SLVQKLFRLRQVRRGSADGGSSDLGAQGQAPQLKRVAAKDLLNLGDQIFLPISVQELPSE 160

Query: 501  KLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSE 680
            K EC    +E+NF+RSL +YKDPAI+V+NKP G+PVQGGV +KRSLD +AA CL+Y+ SE
Sbjct: 161  KQECHCCEEEVNFVRSLELYKDPAIIVVNKPSGMPVQGGVGIKRSLDELAATCLSYDYSE 220

Query: 681  PPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASD-ETGTEKKILQRRYWALVI 857
            PPRLVHRLDRDCSGILVMGRTQ SA VLHSIFRE+T  AS  E   +K+ILQRRYWALVI
Sbjct: 221  PPRLVHRLDRDCSGILVMGRTQLSATVLHSIFREKTVDASKCEINNKKRILQRRYWALVI 280

Query: 858  GCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLEL 1037
            G PRR++GLV APLGKVV+DNGKSDRIT+VD + ++SSQHA+TEY+VI SSSHGYTWLEL
Sbjct: 281  GSPRRTKGLVAAPLGKVVLDNGKSDRITVVDCAQMMSSQHAVTEYRVIQSSSHGYTWLEL 340

Query: 1038 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPF 1217
            SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HRKW  F  S+              LPF
Sbjct: 341  SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQFPFSD-LKNSNEDLCKEKTLPF 399

Query: 1218 GLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMR 1397
            G+++ +GS+SEKHPRLHLHCKQI+LPN+ QALQN+ ++S+YDLS + ++ L A +PPYM+
Sbjct: 400  GIDMERGSVSEKHPRLHLHCKQIILPNVSQALQNLLASSDYDLSELPSIELVAPMPPYMQ 459

Query: 1398 RSWDVTNS 1421
            RSWD+  S
Sbjct: 460  RSWDILKS 467


>XP_010096290.1 RNA pseudourine synthase 4 [Morus notabilis] EXB63685.1 RNA
            pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  528 bits (1361), Expect = 0.0
 Identities = 270/434 (62%), Positives = 319/434 (73%), Gaps = 23/434 (5%)
 Frame = +3

Query: 189  HFSVTRQSD--KWLTLPPVTATVSSSLAAN-------------QLCSSTSPTALKWVLRC 323
            H+S + + +  KW TLPP TATV  ++                Q   S + TALKWV+RC
Sbjct: 37   HYSASSEKNGTKWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRC 96

Query: 324  CPHLPKALVHKLFRLRRVRM-------LPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSV 482
            CP LP++LV KLFRLR+VR          A   +    L+RV+AKD+LN GD+IFLP SV
Sbjct: 97   CPELPRSLVQKLFRLRQVRRESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISV 156

Query: 483  REMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACL 662
            +E+P  K EC    +E+ FIRSL +YKDPAI+V+NKPPGLPVQGG+ +K SLD +A  CL
Sbjct: 157  KELPVEKKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCL 216

Query: 663  NYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRR 839
            +Y+ +EPPRLVHRLDRDCSGILVMGRTQTSA VLHSIFRE+T  AS DET   K +LQRR
Sbjct: 217  SYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRR 276

Query: 840  YWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHG 1019
            YWA VIG PR   GL++APL KVV+DNGKSDRIT+V+ S  LSSQHAIT+Y+VIGSSSHG
Sbjct: 277  YWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHG 336

Query: 1020 YTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXX 1199
            YTWLELSPLTGRKHQLRVHCAEVLGTP+VGDYKYGWQAHR W      +P          
Sbjct: 337  YTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPK 396

Query: 1200 XXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEAD 1379
               LPFGLN++ GSISEKHPRLHLHCKQ+VLPNI   LQNVQ  S+Y+LS +E L L+A 
Sbjct: 397  RKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAP 456

Query: 1380 LPPYMRRSWDVTNS 1421
            LP YM+RSW +TNS
Sbjct: 457  LPSYMQRSWHLTNS 470


>XP_014633041.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X4
            [Glycine max]
          Length = 397

 Score =  525 bits (1352), Expect = 0.0
 Identities = 261/334 (78%), Positives = 287/334 (85%)
 Frame = +3

Query: 417  LKRVAAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPP 596
            +++  AKDTLN+GDRI LP SV+   TP     +T ++INFIR+LVIYKDPAILVLNKPP
Sbjct: 65   IQKGKAKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIRTLVIYKDPAILVLNKPP 123

Query: 597  GLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIF 776
            G+PVQGG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGILVMGRT TS  VLHSIF
Sbjct: 124  GMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIF 183

Query: 777  RERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNS 956
            RE+TSRASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGKVVVDNG+SDRITIVDNS
Sbjct: 184  REKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNS 243

Query: 957  TLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 1136
            TL+SSQHAITEY+VI SSS GYTWLEL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH
Sbjct: 244  TLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 303

Query: 1137 RKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQ 1316
            RKWGHFDL N              LPFGLNLNKGSISE HPRLHLHCKQ+VLPNI QALQ
Sbjct: 304  RKWGHFDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQ 362

Query: 1317 NVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            NVQSAS+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 363  NVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 396


>XP_014633042.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X5
            [Glycine max]
          Length = 395

 Score =  525 bits (1351), Expect = 0.0
 Identities = 261/329 (79%), Positives = 284/329 (86%)
 Frame = +3

Query: 432  AKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQ 611
            AKDTLN+GDRI LP SV+   TP     +T ++INFIR+LVIYKDPAILVLNKPPG+PVQ
Sbjct: 68   AKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQ 126

Query: 612  GGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTS 791
            GG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGILVMGRT TS  VLHSIFRE+TS
Sbjct: 127  GGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTS 186

Query: 792  RASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSS 971
            RASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGKVVVDNG+SDRITIVDNSTL+SS
Sbjct: 187  RASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 246

Query: 972  QHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 1151
            QHAITEY+VI SSS GYTWLEL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH
Sbjct: 247  QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 306

Query: 1152 FDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSA 1331
            FDL N              LPFGLNLNKGSISE HPRLHLHCKQ+VLPNI QALQNVQSA
Sbjct: 307  FDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSA 365

Query: 1332 SNYDLSVVEALNLEADLPPYMRRSWDVTN 1418
            S+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 366  SSCDLSLVEELELVADLPPYMQRSWDVTN 394


>XP_013453292.1 RNA pseudouridine synthase [Medicago truncatula] KEH27320.1 RNA
            pseudouridine synthase [Medicago truncatula]
          Length = 390

 Score =  524 bits (1350), Expect = 0.0
 Identities = 273/366 (74%), Positives = 300/366 (81%), Gaps = 10/366 (2%)
 Frame = +3

Query: 354  KLFRLRRVRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREM----PTP---KLEC 512
            K   L  VRMLP      D   KRV  KDTLNSGDRIFLP+SV++     PTP   +   
Sbjct: 28   KWLTLPPVRMLPRQQ--DDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPL 85

Query: 513  RVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRL 692
             +TAK+INFIRSLVIYKDP ILVLNKPPG+PVQGG+N+K SLD VAA  LNY+ S+PPRL
Sbjct: 86   TLTAKQINFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRL 145

Query: 693  VHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRRYWALVIGCPR 869
            VHRLDRDCSGILVMGRT+TS A+LHSIFRE+TSRAS +E  TEK ILQRRYWALV+GCPR
Sbjct: 146  VHRLDRDCSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPR 205

Query: 870  RSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLT 1049
            RS G+V APLGKVVVDNGKSDRITIVDNS LLSSQHA+TEY+VI SSSHG+TWLELSPLT
Sbjct: 206  RSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLT 265

Query: 1050 GRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNL 1229
            GRKHQLRVHCAEVLGTPIVGDYKYG QAH+KWG FD SN              LPFGLNL
Sbjct: 266  GRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSN-LEDSTEEHLKEEALPFGLNL 324

Query: 1230 NKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSA--SNYDLSVVEALNLEADLPPYMRRS 1403
            NKGSIS+KHPRLHLHCKQIVLPNI QALQNVQS   S+YDLS VE+L LEADLPPYM++S
Sbjct: 325  NKGSISDKHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPYMKKS 384

Query: 1404 WDVTNS 1421
            W+VTNS
Sbjct: 385  WEVTNS 390


>XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Juglans regia]
          Length = 476

 Score =  527 bits (1357), Expect = e-180
 Identities = 266/425 (62%), Positives = 316/425 (74%), Gaps = 24/425 (5%)
 Frame = +3

Query: 210  SDKWLTLPPVTATVS----------------SSLAANQLCSSTSPTALKWVLRCCPHLPK 341
            SDKW TLPP T TV+                S +  +   +ST+ TALKWVLRCCP LP+
Sbjct: 51   SDKWFTLPPFTPTVNGAAFGKEISRNRAPLKSGVTTSATSTSTTTTALKWVLRCCPDLPR 110

Query: 342  ALVHKLFRLRRVRM--------LPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPT 497
            +LV KLFRLR+VR            A   Q++ LKRV+AKD++N GDRIFLP +V+E P 
Sbjct: 111  SLVQKLFRLRQVRRESNDVGSTCVDAQVQQERRLKRVSAKDSMNVGDRIFLPITVQEFPF 170

Query: 498  PKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESS 677
             K +C    +E NF+RSLV+YKDPAI+V+NKPPG+PVQGG+ +K+SLD +AA CL Y  S
Sbjct: 171  EKQDCHCNEEEANFVRSLVLYKDPAIVVVNKPPGMPVQGGIGIKQSLDGLAATCLTYNYS 230

Query: 678  EPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVI 857
            E PRLVHRLDRD SGILVMGRTQTSAAVLHSIFRE+T  A D+   E +IL+RRYWALVI
Sbjct: 231  ETPRLVHRLDRDSSGILVMGRTQTSAAVLHSIFREKTFGAKDDVDNEVRILERRYWALVI 290

Query: 858  GCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLEL 1037
            G PRR +GL++ PLGKVVVDNGKSDRITIVDN+  +S+QHA+T+YQVI SS +GYTWLEL
Sbjct: 291  GSPRRQKGLISVPLGKVVVDNGKSDRITIVDNAQNMSAQHALTKYQVIKSSCYGYTWLEL 350

Query: 1038 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPF 1217
            SPLTGRKHQLRVHCAEVLGTPIVGD KYGWQAH+K  H    +              +PF
Sbjct: 351  SPLTGRKHQLRVHCAEVLGTPIVGDLKYGWQAHKKLKHLPWPSLERESHENVTKGKTIPF 410

Query: 1218 GLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMR 1397
            GL+L  GSISEKHPRLHLHCKQ+VLPN+  ALQNVQ +S+Y LS VE+L L A LP YM+
Sbjct: 411  GLDLQSGSISEKHPRLHLHCKQMVLPNVSMALQNVQFSSDYHLSQVESLELVAPLPSYMQ 470

Query: 1398 RSWDV 1412
            RSWD+
Sbjct: 471  RSWDI 475


>XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            EEE87831.2 hypothetical protein POPTR_0009s09860g
            [Populus trichocarpa]
          Length = 471

 Score =  522 bits (1345), Expect = e-179
 Identities = 260/413 (62%), Positives = 319/413 (77%), Gaps = 14/413 (3%)
 Frame = +3

Query: 216  KWLTLPPVTATVSSSLAANQLC------SSTSPTALKWVLRCCPHLPKALVHKLFRLRRV 377
            KW TLPP T+T++ S+    L       S++  TALKWVLRCCP LP+ LV KLFRLR+V
Sbjct: 57   KWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCPELPRNLVQKLFRLRQV 116

Query: 378  RM-LPAASAV------QDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEIN 536
            R   P   +       Q+  LKRVAAKD+++ GDRIFLP SV+ +P  K +C    +EIN
Sbjct: 117  RRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQDCHCNEEEIN 176

Query: 537  FIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDC 716
            FIR L +YKD AI+V+NKPPG+PVQGG+ +KRSLD ++A+C + + SEPPRLVHRLDRDC
Sbjct: 177  FIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDC 236

Query: 717  SGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRRYWALVIGCPRRSRGLVTA 893
            SGILVMGRTQTSA VLH+IFRE+T  AS D+ G +++ILQR+YWALVIG PRR +GL++A
Sbjct: 237  SGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISA 296

Query: 894  PLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYQVIGSSSHGYTWLELSPLTGRKHQLRV 1073
            PLGKVVVDNGKSDRIT+V+NS  LSSQHA+T+Y+VI  SSHG+TWLELSPLTGRKHQLRV
Sbjct: 297  PLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVI-ESSHGFTWLELSPLTGRKHQLRV 355

Query: 1074 HCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEK 1253
            HCAEVLGTPIVGDYKY WQAHR W     SN             ILPF L+L+ GSISEK
Sbjct: 356  HCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISEK 415

Query: 1254 HPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDV 1412
            HPRLHLHCKQ+VLP++ +ALQ+VQ +S+YD S + +L  +A LPPYM++SWD+
Sbjct: 416  HPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDI 468