BLASTX nr result
ID: Glycyrrhiza35_contig00015427
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza35_contig00015427
(1138 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycy... 699 0.0
AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrh... 693 0.0
YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.... 659 0.0
YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC1003... 657 0.0
YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL973... 639 0.0
YP_002149735.1 RNA polymerase beta' subunit [Cicer arietinum] AC... 610 0.0
AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus of... 598 0.0
AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofer... 597 0.0
YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medic... 594 0.0
XP_003606032.1 DNA-directed RNA polymerase subunit beta [Medicag... 589 0.0
AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 589 0.0
AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 589 0.0
YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula] 589 0.0
AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago... 589 0.0
AIJ28040.1 RNA polymerase beta' subunit (chloroplast) [Trifolium... 588 0.0
YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medi... 588 0.0
AHY32883.1 RNA polymerase beta' subunit (chloroplast) [Ceratonia... 588 0.0
AJE72656.1 RNA polymerase beta'' subunit (plastid) [Amorpha frut... 588 0.0
AJE71804.1 RNA polymerase beta'' subunit (plastid) [Amorpha cane... 588 0.0
YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 587 0.0
>YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycyrrhiza glabra]
AGU00070.1 RNA polymerase beta' subunit (chloroplast)
[Glycyrrhiza glabra]
Length = 1388
Score = 699 bits (1804), Expect = 0.0
Identities = 355/379 (93%), Positives = 355/379 (93%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI
Sbjct: 634 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 693
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLVR FSGDIHFPGEMDKISRHSAILIPPGTV
Sbjct: 694 TLNIRSRVGGLVRLEKKKKKIELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNRKQS 753
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI
Sbjct: 754 KKMKNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 813
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL
Sbjct: 814 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 873
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN
Sbjct: 874 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 933
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 1080
KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF
Sbjct: 934 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 993
Query: 1081 YSFYRLITHNQISITKNLK 1137
YSFYRLITHNQISITKNLK
Sbjct: 994 YSFYRLITHNQISITKNLK 1012
>AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrhiza lepidota]
Length = 1388
Score = 693 bits (1789), Expect = 0.0
Identities = 351/379 (92%), Positives = 354/379 (93%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI
Sbjct: 634 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 693
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLVR FSGDIHFPGEMDKISRHSAILIPPGTV
Sbjct: 694 TLNIRSRVGGLVRLEKKKKKIELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNRKQS 753
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI
Sbjct: 754 KKMKNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 813
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL
Sbjct: 814 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 873
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIR+LLNRN
Sbjct: 874 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRILLNRN 933
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 1080
KEC+SLIILSSSNCFQTR FNNVKYHNEIKKGINKFKKDP+IPIQNSLGPLGIALPISNF
Sbjct: 934 KECRSLIILSSSNCFQTRPFNNVKYHNEIKKGINKFKKDPLIPIQNSLGPLGIALPISNF 993
Query: 1081 YSFYRLITHNQISITKNLK 1137
YSFYRLITHNQISITKNLK
Sbjct: 994 YSFYRLITHNQISITKNLK 1012
>YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.1 RpoC2
(chloroplast) [Wisteria sinensis]
Length = 1367
Score = 659 bits (1699), Expect = 0.0
Identities = 336/379 (88%), Positives = 344/379 (90%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHSIFQKEDLIEYRGIKELKPK Q KVDRFFFIPEEVHILPESSSIMVRNNSI+GI TPI
Sbjct: 619 IHSIFQKEDLIEYRGIKELKPKYQNKVDRFFFIPEEVHILPESSSIMVRNNSIVGIGTPI 678
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLVR FSGDIHFPGEMDKISRHSAILIPPGTV
Sbjct: 679 TLNIRSRVGGLVRLEKKKKKIELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNWKES 738
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI
Sbjct: 739 KKTKNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 798
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSI+GISDTRIQLVRTCLVLNW+QDKKSSSI EALASFVEVSTNGLIEYFLRIDL
Sbjct: 799 LYGNGKSIQGISDTRIQLVRTCLVLNWNQDKKSSSIAEALASFVEVSTNGLIEYFLRIDL 858
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSHTSYIRKR DPSGSGLISDNESD+ININPFYSIHS AKIQQSLSQNHGTIRMLLNRN
Sbjct: 859 VKSHTSYIRKRNDPSGSGLISDNESDQININPFYSIHSTAKIQQSLSQNHGTIRMLLNRN 918
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 1080
KEC+SLIILSSSNCFQ R FNNVKYHN IKKGINKFKKDPII I+NSLGPLGIAL I+NF
Sbjct: 919 KECRSLIILSSSNCFQMRPFNNVKYHNGIKKGINKFKKDPIISIKNSLGPLGIALQIANF 978
Query: 1081 YSFYRLITHNQISITKNLK 1137
YSFYRLITHNQISITKNL+
Sbjct: 979 YSFYRLITHNQISITKNLQ 997
>YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC10039.1 RpoC2
(chloroplast) [Wisteria floribunda]
Length = 1367
Score = 657 bits (1696), Expect = 0.0
Identities = 335/379 (88%), Positives = 344/379 (90%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHSIFQKEDLIEYRGIKELKPK Q KVDRFFFIPEEVHILPESSSIMVRNNSI+GI TPI
Sbjct: 619 IHSIFQKEDLIEYRGIKELKPKYQNKVDRFFFIPEEVHILPESSSIMVRNNSIVGIGTPI 678
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLVR FSGDIHFPGEMDKISRHSAILIPPGTV
Sbjct: 679 TLNIRSRVGGLVRLEKKKKKIELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKIWKES 738
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI
Sbjct: 739 KKTKNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 798
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSI+GISDTRIQLVRTCLVLNW+QDKKSSSI EALASFVEVSTNGLIEYFLRIDL
Sbjct: 799 LYGNGKSIQGISDTRIQLVRTCLVLNWNQDKKSSSIAEALASFVEVSTNGLIEYFLRIDL 858
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSHTSYIRKR DPSGSGLISDNE+D+ININPFYSIHS AKIQQSLSQNHGTIRMLLNRN
Sbjct: 859 VKSHTSYIRKRNDPSGSGLISDNETDQININPFYSIHSTAKIQQSLSQNHGTIRMLLNRN 918
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 1080
KEC+SLIILSSSNCFQ R FNNVKYHN IKKGINKFKKDPII I+NSLGPLGIAL I+NF
Sbjct: 919 KECRSLIILSSSNCFQMRPFNNVKYHNGIKKGINKFKKDPIISIKNSLGPLGIALQIANF 978
Query: 1081 YSFYRLITHNQISITKNLK 1137
YSFYRLITHNQISITKNL+
Sbjct: 979 YSFYRLITHNQISITKNLQ 997
>YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL97397.1 RpoC2
(chloroplast) [Caragana microphylla]
Length = 1372
Score = 639 bits (1647), Expect = 0.0
Identities = 329/379 (86%), Positives = 339/379 (89%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
I+SIFQKEDLIEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 636 INSIFQKEDLIEYRGIKELKPKSQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 695
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLVR FSG+IHFPGEMDKISRHSAILIPPGTV
Sbjct: 696 TLNIRSRVGGLVRLEKKKKKMELKIFSGNIHFPGEMDKISRHSAILIPPGTVKKKWKESK 755
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NW YVQWIATTKKKYFVLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKVLNYI
Sbjct: 756 KMN-NWTYVQWIATTKKKYFVLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELKVLNYI 814
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL
Sbjct: 815 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 874
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSHTSYIRKR D SG G ISDNESDRININPF SIHSKAKIQQS SQN GTIRMLLNRN
Sbjct: 875 VKSHTSYIRKRNDSSGLGCISDNESDRININPFLSIHSKAKIQQSRSQNQGTIRMLLNRN 934
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 1080
KEC+SLIILSSSNCFQ R FNNVKYHN I+KGINKFKKD IIPI+NSLGPLGIAL I+NF
Sbjct: 935 KECRSLIILSSSNCFQMRPFNNVKYHNGIRKGINKFKKDSIIPIKNSLGPLGIALQIANF 994
Query: 1081 YSFYRLITHNQISITKNLK 1137
YSFYR ITHNQISITKNL+
Sbjct: 995 YSFYRSITHNQISITKNLQ 1013
>YP_002149735.1 RNA polymerase beta' subunit [Cicer arietinum] ACH41072.1 RNA
polymerase beta' subunit (chloroplast) [Cicer arietinum]
Length = 1376
Score = 610 bits (1573), Expect = 0.0
Identities = 312/381 (81%), Positives = 330/381 (86%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKEDLIEYRGIKELKPK Q KVDRFFFIPEEVHILPESSSIM+RNNS++GI TPI
Sbjct: 635 IHSLFQKEDLIEYRGIKELKPKYQNKVDRFFFIPEEVHILPESSSIMIRNNSLVGIGTPI 694
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLVR FSG+IHFPGEMDKISRHS+ILIPPGTV
Sbjct: 695 TLNIRSRVGGLVRLEKKKKKIELKIFSGNIHFPGEMDKISRHSSILIPPGTVKKKKRKEA 754
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+FVKLFPQDLFQERDNLEL+VLNYI
Sbjct: 755 KKINNWIYVQWIATTKKKYFVLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELRVLNYI 814
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYF+RIDL
Sbjct: 815 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSSSIEEAPASFVEVSTNGLIEYFIRIDL 874
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSH SYIRKR DPSG GLI D ESDR+NINPF+SIHSK KIQQSL QNHGTIRMLLNRN
Sbjct: 875 VKSHMSYIRKRNDPSGLGLIPDKESDRVNINPFFSIHSKTKIQQSLIQNHGTIRMLLNRN 934
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KKDPIIPI +NSLGPLGIAL ++
Sbjct: 935 KECRSWIILSSSNCFQMRPFNNVKYHNGI-------KKDPIIPINNKNSLGPLGIALQVA 987
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
N+YSFYRLITHNQ+SIT NL+
Sbjct: 988 NYYSFYRLITHNQVSITNNLQ 1008
>AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus officinalis]
AJE71662.1 RNA polymerase beta'' subunit (plastid)
[Melilotus albus]
Length = 1376
Score = 598 bits (1541), Expect = 0.0
Identities = 311/381 (81%), Positives = 328/381 (86%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
I SIFQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 636 IQSIFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 695
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGEMDKISRHS+ILIPPGTV
Sbjct: 696 TFNIRSRVGGLVRLEKKKKKIELKIFSGNIHFPGEMDKISRHSSILIPPGTVKKKKWKES 755
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+F KLFP+DLFQERDNLELKV+NYI
Sbjct: 756 KKINNWIYVQWIATTKKKYFVLVRPVILYEIPDSIHFGKLFPKDLFQERDNLELKVVNYI 815
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYFLRIDL
Sbjct: 816 LYGNGKSIRGISDTRIQLVRTCLVLNWDQAKKSSSIEEAPASFVEVSTNGLIEYFLRIDL 875
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+TSYIRKR DPSG GLI+DNESD ININPF+SIHSKAKIQQSLSQNHGTIRMLLNRN
Sbjct: 876 VKSNTSYIRKRNDPSGLGLIADNESDPININPFFSIHSKAKIQQSLSQNHGTIRMLLNRN 935
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KE +S IILSSSNCFQ R FNNVK+HN I KK+PIIPI NSLGPLGIAL ++
Sbjct: 936 KEYRSWIILSSSNCFQMRPFNNVKFHNGI-------KKNPIIPINNNNSLGPLGIALQVA 988
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NFYS YRLITHNQI+I KNL+
Sbjct: 989 NFYSLYRLITHNQIAIIKNLQ 1009
>AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofera tinctoria]
Length = 1376
Score = 597 bits (1540), Expect = 0.0
Identities = 311/381 (81%), Positives = 326/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKED-LIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTP 177
IHSI +KED LIEYRG+KE KPK QIKVDRFFFIPEEVHILPESSSIMVRNNSI+G+DTP
Sbjct: 636 IHSILKKEDFLIEYRGVKEFKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSIVGVDTP 695
Query: 178 ITLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGT-VXXXXXX 354
ITLNIRSRVGGLVR FSG+I+FPGEMDKISRHSAILIPPGT V
Sbjct: 696 ITLNIRSRVGGLVRVEKKKKRIELKIFSGNIYFPGEMDKISRHSAILIPPGTTVKKKNSK 755
Query: 355 XXXXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLN 534
NWIYVQWI TTKKKYFVLVRPVILYEI D IN VKLFPQDLFQERDNLELKV+N
Sbjct: 756 ESKKKKNWIYVQWITTTKKKYFVLVRPVILYEIADGINLVKLFPQDLFQERDNLELKVIN 815
Query: 535 YILYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRI 714
YILYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEA ASFVEVSTNGLI FLRI
Sbjct: 816 YILYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEARASFVEVSTNGLIGDFLRI 875
Query: 715 DLVKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLN 894
DLVKSH SY RKR D SGSGLISDNES NINPFYSI+SKAKIQQSLSQNHGTIRMLLN
Sbjct: 876 DLVKSHISYFRKRNDLSGSGLISDNESHPTNINPFYSIYSKAKIQQSLSQNHGTIRMLLN 935
Query: 895 RNKECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPIS 1074
RNKEC+SLIILSS NCFQ FN+ KYHN IK+GINK K+DPIIPI+NSLGPLGIAL +S
Sbjct: 936 RNKECRSLIILSSYNCFQMGLFNDGKYHNGIKEGINKLKRDPIIPIKNSLGPLGIALQVS 995
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NF SFY LITHNQISI +N K
Sbjct: 996 NFDSFYHLITHNQISINQNWK 1016
>YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medicago hybrida]
YP_009141687.1 RNA polymerase beta' subunit (chloroplast)
[Medicago papillosa] AIL56137.1 RNA polymerase beta'
subunit (chloroplast) [Medicago hybrida] AIL56212.1 RNA
polymerase beta' subunit (chloroplast) [Medicago
papillosa] AMC32363.1 RNA polymerase beta'' subunit
(chloroplast) [Medicago sativa] ANS57907.1 RNA polymerase
beta' subunit (chloroplast) [Medicago sativa]
Length = 1370
Score = 594 bits (1532), Expect = 0.0
Identities = 308/381 (80%), Positives = 326/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 634 IHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 693
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGE DKISRHS+ILIPPGTV
Sbjct: 694 TFNIRSRVGGLVRLEKKKKKIELKIFSGNIHFPGERDKISRHSSILIPPGTVKKKWKESK 753
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWI TTKKKYFVLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYI
Sbjct: 754 KIH-NWIYVQWITTTKKKYFVLVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYI 812
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDL
Sbjct: 813 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDL 872
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+TSYIRKR DPSG GLI+DNESDRININPF+SIHSKAKI++SLSQNHGTIRMLLNRN
Sbjct: 873 VKSNTSYIRKRNDPSGLGLIADNESDRININPFFSIHSKAKIKKSLSQNHGTIRMLLNRN 932
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KK+P IPI NSLGPLGIA +
Sbjct: 933 KECRSWIILSSSNCFQIRPFNNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVG 985
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NFYS YRLITHNQISI KN +
Sbjct: 986 NFYSLYRLITHNQISIMKNFQ 1006
>XP_003606032.1 DNA-directed RNA polymerase subunit beta [Medicago truncatula]
AES88229.1 DNA-directed RNA polymerase subunit beta
[Medicago truncatula]
Length = 1368
Score = 589 bits (1519), Expect = 0.0
Identities = 305/381 (80%), Positives = 324/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 638 IHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 697
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGE DKISRHS+ILIPPGTV
Sbjct: 698 TFNIRSRVGGLVRLEKKKKKIELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESK 757
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYI
Sbjct: 758 KIN-NWIYVQWIATTKKKYFVLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYI 816
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDL
Sbjct: 817 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDL 876
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+T+YIRKR DPSG GLI+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRN
Sbjct: 877 VKSNTAYIRKRNDPSGLGLIADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRN 936
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KK+P IPI NSLGPLGIA +
Sbjct: 937 KECRSWIILSSSNCFQIRPFNNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVG 989
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NFYS Y LITHNQISI KN +
Sbjct: 990 NFYSLYHLITHNQISIMKNFQ 1010
>AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
Length = 1370
Score = 589 bits (1519), Expect = 0.0
Identities = 305/381 (80%), Positives = 324/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 634 IHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 693
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGE DKISRHS+ILIPPGTV
Sbjct: 694 TFNIRSRVGGLVRFEKKKKKIELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESK 753
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYI
Sbjct: 754 KIN-NWIYVQWIATTKKKYFVLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYI 812
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDL
Sbjct: 813 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDL 872
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+T+YIRKR DPSG GLI+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRN
Sbjct: 873 VKSNTAYIRKRNDPSGLGLIADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRN 932
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KK+P IPI NSLGPLGIA +
Sbjct: 933 KECRSWIILSSSNCFQIRPFNNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVG 985
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NFYS Y LITHNQISI KN +
Sbjct: 986 NFYSLYHLITHNQISIMKNFQ 1006
>AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
AFR60049.1 RNA polymerase beta'' subunit (plastid)
[Medicago truncatula]
Length = 1370
Score = 589 bits (1519), Expect = 0.0
Identities = 305/381 (80%), Positives = 324/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 634 IHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 693
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGE DKISRHS+ILIPPGTV
Sbjct: 694 TFNIRSRVGGLVRLEKKKKKIELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESK 753
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYI
Sbjct: 754 KIN-NWIYVQWIATTKKKYFVLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYI 812
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDL
Sbjct: 813 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDL 872
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+T+YIRKR DPSG GLI+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRN
Sbjct: 873 VKSNTAYIRKRNDPSGLGLIADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRN 932
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KK+P IPI NSLGPLGIA +
Sbjct: 933 KECRSWIILSSSNCFQIRPFNNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVG 985
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NFYS Y LITHNQISI KN +
Sbjct: 986 NFYSLYHLITHNQISIMKNFQ 1006
>YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula]
Length = 1374
Score = 589 bits (1519), Expect = 0.0
Identities = 305/381 (80%), Positives = 324/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 638 IHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 697
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGE DKISRHS+ILIPPGTV
Sbjct: 698 TFNIRSRVGGLVRLEKKKKKIELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESK 757
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYI
Sbjct: 758 KIN-NWIYVQWIATTKKKYFVLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYI 816
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDL
Sbjct: 817 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDL 876
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+T+YIRKR DPSG GLI+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRN
Sbjct: 877 VKSNTAYIRKRNDPSGLGLIADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRN 936
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KK+P IPI NSLGPLGIA +
Sbjct: 937 KECRSWIILSSSNCFQIRPFNNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVG 989
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NFYS Y LITHNQISI KN +
Sbjct: 990 NFYSLYHLITHNQISIMKNFQ 1010
>AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago truncatula f.
tricycla]
Length = 1370
Score = 589 bits (1518), Expect = 0.0
Identities = 306/381 (80%), Positives = 324/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 634 IHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 693
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGE DKISRHS+ILIPPGTV
Sbjct: 694 TFNIRSRVGGLVRLEKKKKKIELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESK 753
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+F KLFPQDLFQERDNLELKV+NYI
Sbjct: 754 KIN-NWIYVQWIATTKKKYFVLVRPVILYEIPDSIDFRKLFPQDLFQERDNLELKVVNYI 812
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDL
Sbjct: 813 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDL 872
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+T+YIRKR DPSG GLI+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRN
Sbjct: 873 VKSNTAYIRKRNDPSGLGLIADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRN 932
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KK+P IPI NSLGPLGIA +
Sbjct: 933 KECRSWIILSSSNCFQIRPFNNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVG 985
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NFYS YRLITHNQISI KN +
Sbjct: 986 NFYSLYRLITHNQISIMKNFQ 1006
>AIJ28040.1 RNA polymerase beta' subunit (chloroplast) [Trifolium lupinaster]
Length = 1367
Score = 588 bits (1515), Expect = 0.0
Identities = 309/381 (81%), Positives = 326/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHSI QKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 636 IHSILQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 695
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGL+R FSG+IHFPGE+DKISRHSAILIPPGTV
Sbjct: 696 TFNIRSRVGGLLRLEKKKKKIELKIFSGNIHFPGEVDKISRHSAILIPPGTVKKKRKESK 755
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWIATTKKKYFVLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYI
Sbjct: 756 KIN-NWIYVQWIATTKKKYFVLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELKVVNYI 814
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYFLRIDL
Sbjct: 815 LYGNGKSIRGISDTRIQLVRTCLVLNWDQVKKSSSIEEAPASFVEVSTNGLIEYFLRIDL 874
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+TSYIRKR DPSG GLI+DNE D ININPF+SIHSKAKIQQS+SQNHGTIRMLLNRN
Sbjct: 875 VKSNTSYIRKRNDPSGLGLIADNELDGININPFFSIHSKAKIQQSISQNHGTIRMLLNRN 934
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KE +S IILSSSNCFQ RSFNNVKYHN I KKDP IPI +NSLGPLGIAL ++
Sbjct: 935 KESRSWIILSSSNCFQMRSFNNVKYHNGI-------KKDPRIPINNKNSLGPLGIALQVA 987
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NF S YR T+NQISI KNL+
Sbjct: 988 NFDSLYRFKTYNQISIIKNLQ 1008
>YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medicago falcata]
AOG66214.1 RNA polymerase beta'' subunit (chloroplast)
[Medicago sativa] APC60490.1 RNA polymerase beta''
subunit (chloroplast) [Medicago falcata]
Length = 1374
Score = 588 bits (1515), Expect = 0.0
Identities = 305/381 (80%), Positives = 325/381 (85%), Gaps = 2/381 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHS+FQKED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 638 IHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 697
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T NIRSRVGGLVR FSG+IHFPGE DKISRHS+ILIPPGTV
Sbjct: 698 TFNIRSRVGGLVRLEKKKKKIELKIFSGNIHFPGERDKISRHSSILIPPGTVKKKWKESK 757
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWI T+KKKYFVLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYI
Sbjct: 758 KIN-NWIYVQWITTSKKKYFVLVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYI 816
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDL
Sbjct: 817 LYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDL 876
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKS+TSYIRKR DPSG GLI+DNESDRININPF+SIHSKAK+++SLSQNHGTIRMLLNRN
Sbjct: 877 VKSNTSYIRKRNDPSGLGLIADNESDRININPFFSIHSKAKMKKSLSQNHGTIRMLLNRN 936
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPIS 1074
KEC+S IILSSSNCFQ R FNNVKYHN I KK+P IPI NSLGPLGIA +
Sbjct: 937 KECRSWIILSSSNCFQIRPFNNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVG 989
Query: 1075 NFYSFYRLITHNQISITKNLK 1137
NF S YRLITHNQISI KN +
Sbjct: 990 NFDSLYRLITHNQISIMKNFQ 1010
>AHY32883.1 RNA polymerase beta' subunit (chloroplast) [Ceratonia siliqua]
Length = 1377
Score = 588 bits (1515), Expect = 0.0
Identities = 301/379 (79%), Positives = 322/379 (84%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
+HSIF+KEDLIEYRG+KE KPK Q+KVDRFFFIPEEVHILPESSSIMVRNNSIIG+DTPI
Sbjct: 640 VHSIFKKEDLIEYRGVKEFKPKYQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVDTPI 699
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
T+NIRSRVGGLVR FSGDI+FPGEMDKISRHS ILIP GTV
Sbjct: 700 TVNIRSRVGGLVRVEKKKKRIELKIFSGDIYFPGEMDKISRHSGILIPLGTVKKKNSTES 759
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWI TKKKYFVLVRPVI+YEI D IN VKLFPQDL QERDNLELKV+NYI
Sbjct: 760 KKFKNWIYVQWITPTKKKYFVLVRPVIIYEIADGINLVKLFPQDLLQERDNLELKVVNYI 819
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGK I+GISDT IQLVRTCLVLNWD+DKKSSSIEE ASFVEVSTNGLI FLRIDL
Sbjct: 820 LYGNGKPIQGISDTSIQLVRTCLVLNWDRDKKSSSIEETRASFVEVSTNGLIRDFLRIDL 879
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSH SYIRKR DPSGS LI+DNESDR NINPFYSI+SKAKIQQSLSQNHGTIRMLLNRN
Sbjct: 880 VKSHISYIRKRNDPSGSRLIADNESDRTNINPFYSIYSKAKIQQSLSQNHGTIRMLLNRN 939
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 1080
KEC+SL ILSS NCFQ FN+VKYHN IK+ I K+DPIIPI+NSLGPLGIAL ++ F
Sbjct: 940 KECRSLRILSSVNCFQMGPFNDVKYHNVIKESI---KRDPIIPIRNSLGPLGIALQVAKF 996
Query: 1081 YSFYRLITHNQISITKNLK 1137
YSFYRLITHNQISITK L+
Sbjct: 997 YSFYRLITHNQISITKYLQ 1015
>AJE72656.1 RNA polymerase beta'' subunit (plastid) [Amorpha fruticosa]
Length = 1398
Score = 588 bits (1515), Expect = 0.0
Identities = 303/380 (79%), Positives = 325/380 (85%), Gaps = 1/380 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHSIF+KEDLIEYRG+KE KPK QIK+DRFFFIPEE+HILPESSSIMVRNNSIIG+DTPI
Sbjct: 636 IHSIFKKEDLIEYRGVKEFKPKYQIKIDRFFFIPEEMHILPESSSIMVRNNSIIGVDTPI 695
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLV+ FSGDI+FPGEMDKISRHS ILIP TV
Sbjct: 696 TLNIRSRVGGLVQIEKKKKKMELKIFSGDIYFPGEMDKISRHSGILIPSRTVKKNSKESK 755
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWI TTKKKYFVLVRPVILYEI D IN VK FPQDLFQERDNLELKVLNYI
Sbjct: 756 KIK-NWIYVQWITTTKKKYFVLVRPVILYEITDGINLVKFFPQDLFQERDNLELKVLNYI 814
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDT IQLVRTCLVLNWDQDKK+SSIEEA ASFVEVSTNGLI FL+IDL
Sbjct: 815 LYGNGKSIRGISDTSIQLVRTCLVLNWDQDKKNSSIEEARASFVEVSTNGLIGDFLKIDL 874
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHS-KAKIQQSLSQNHGTIRMLLNR 897
KSH YIRKR DPSGS LIS+N+SDRININPF+SI+S K KIQQSLSQNHGTIRMLLNR
Sbjct: 875 AKSHILYIRKRNDPSGSRLISNNKSDRININPFFSIYSNKTKIQQSLSQNHGTIRMLLNR 934
Query: 898 NKECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISN 1077
KEC+SLIILSSSNCFQ FNNVKYHN +K+GIN K+DPIIPI+NSLGPLGIAL ++N
Sbjct: 935 KKECRSLIILSSSNCFQMGPFNNVKYHNGVKEGINIIKRDPIIPIKNSLGPLGIALQVAN 994
Query: 1078 FYSFYRLITHNQISITKNLK 1137
FYSF RLIT+NQI ITKNL+
Sbjct: 995 FYSFNRLITYNQILITKNLQ 1014
>AJE71804.1 RNA polymerase beta'' subunit (plastid) [Amorpha canescens]
Length = 1398
Score = 588 bits (1515), Expect = 0.0
Identities = 303/380 (79%), Positives = 325/380 (85%), Gaps = 1/380 (0%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
IHSIF+KEDLIEYRG+KE KPK QIK+DRFFFIPEE+HILPESSSIMVRNNSIIG+DTPI
Sbjct: 636 IHSIFKKEDLIEYRGVKEFKPKYQIKIDRFFFIPEEMHILPESSSIMVRNNSIIGVDTPI 695
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRVGGLV+ FSGDI+FPGEMDKISRHS ILIP TV
Sbjct: 696 TLNIRSRVGGLVQIEKKKKKIELKIFSGDIYFPGEMDKISRHSGILIPSRTVKKNSKESK 755
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NWIYVQWI TTKKKYFVLVRPVILYEI D IN VK FPQDLFQERDNLELKVLNYI
Sbjct: 756 KIK-NWIYVQWITTTKKKYFVLVRPVILYEITDGINLVKFFPQDLFQERDNLELKVLNYI 814
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDT IQLVRTCLVLNWDQDKK+SSIEEA ASFVEVSTNGLI FL+IDL
Sbjct: 815 LYGNGKSIRGISDTSIQLVRTCLVLNWDQDKKNSSIEEARASFVEVSTNGLIGDFLKIDL 874
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHS-KAKIQQSLSQNHGTIRMLLNR 897
KSH YIRKR DPSGS LIS+N+SDRININPF+SI+S K KIQQSLSQNHGTIRMLLNR
Sbjct: 875 AKSHILYIRKRNDPSGSRLISNNKSDRININPFFSIYSNKTKIQQSLSQNHGTIRMLLNR 934
Query: 898 NKECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISN 1077
KEC+SLIILSSSNCFQ FNNVKYHN +K+GIN K+DPIIPI+NSLGPLGIAL ++N
Sbjct: 935 KKECRSLIILSSSNCFQMGPFNNVKYHNGVKEGINIIKRDPIIPIKNSLGPLGIALQVAN 994
Query: 1078 FYSFYRLITHNQISITKNLK 1137
FYSF RLIT+NQI ITKNL+
Sbjct: 995 FYSFNRLITYNQILITKNLQ 1014
>YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus
var. nakaianus] ALH42736.1 RNA polymerase beta'' subunit
(chloroplast) [Astragalus mongholicus var. nakaianus]
ANK78900.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus membranaceus var. membranaceus]
Length = 1372
Score = 587 bits (1512), Expect = 0.0
Identities = 313/379 (82%), Positives = 324/379 (85%)
Frame = +1
Query: 1 IHSIFQKEDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPI 180
I SIFQKEDLIEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPI
Sbjct: 636 IQSIFQKEDLIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPI 695
Query: 181 TLNIRSRVGGLVRXXXXXXXXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXX 360
TLNIRSRV GLVR FSG+IHFPGEMDKISR SAILIPP TV
Sbjct: 696 TLNIRSRVRGLVRLEKKKKKIELKIFSGNIHFPGEMDKISRPSAILIPPRTVKKKRKESK 755
Query: 361 XXXXNWIYVQWIATTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYI 540
NW YVQWI TTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYI
Sbjct: 756 KLN-NWTYVQWITTTKKKYFVLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYI 814
Query: 541 LYGNGKSIRGISDTRIQLVRTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDL 720
LYGNGKSIRGISDTRIQLVRTCLVLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI L
Sbjct: 815 LYGNGKSIRGISDTRIQLVRTCLVLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYL 874
Query: 721 VKSHTSYIRKRKDPSGSGLISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRN 900
VKSHTSYIRKR DPSG GLISD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRN
Sbjct: 875 VKSHTSYIRKRNDPSGLGLISD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRN 932
Query: 901 KECQSLIILSSSNCFQTRSFNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNF 1080
KEC+SLIILSSSNCFQ R FNNVK N I KKDPII I+NSLGPLGIAL I+NF
Sbjct: 933 KECRSLIILSSSNCFQMRPFNNVKDPNGI-------KKDPIIAIKNSLGPLGIALQIANF 985
Query: 1081 YSFYRLITHNQISITKNLK 1137
YSF RLITHNQISITKNL+
Sbjct: 986 YSFSRLITHNQISITKNLQ 1004