BLASTX nr result
ID: Glycyrrhiza34_contig00014929
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza34_contig00014929
(1236 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycy... 598 0.0
AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrh... 593 0.0
YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.... 564 0.0
YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC1003... 563 0.0
YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL973... 541 0.0
YP_002149735.1 RNA polymerase beta' subunit [Cicer arietinum] AC... 509 e-174
AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofer... 510 e-174
AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus of... 505 e-173
YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medic... 499 e-171
AHY32883.1 RNA polymerase beta' subunit (chloroplast) [Ceratonia... 493 e-170
AIJ28040.1 RNA polymerase beta' subunit (chloroplast) [Trifolium... 495 e-170
YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 494 e-170
YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 494 e-170
AJE71804.1 RNA polymerase beta'' subunit (plastid) [Amorpha cane... 493 e-169
YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula] 493 e-169
AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 493 e-169
XP_003606032.1 DNA-directed RNA polymerase subunit beta [Medicag... 493 e-169
AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago... 493 e-169
YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medi... 493 e-169
AJE72656.1 RNA polymerase beta'' subunit (plastid) [Amorpha frut... 491 e-169
>YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycyrrhiza glabra]
AGU00070.1 RNA polymerase beta' subunit (chloroplast)
[Glycyrrhiza glabra]
Length = 1388
Score = 598 bits (1543), Expect(2) = 0.0
Identities = 305/327 (93%), Positives = 305/327 (93%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 714 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNRKQSKKMKNWIYVQWIATTKKKYF 773
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 774 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 833
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI
Sbjct: 834 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 893
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF
Sbjct: 894 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 953
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISIT
Sbjct: 954 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITKNLKN 1013
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQVIKYYLMDENEKIYKP
Sbjct: 1014 LQLDKLKETFQVIKYYLMDENEKIYKP 1040
Score = 144 bits (363), Expect(2) = 0.0
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR
Sbjct: 641 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 700
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 701 VGGLVRLEKKKK 712
>AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrhiza lepidota]
Length = 1388
Score = 593 bits (1528), Expect(2) = 0.0
Identities = 301/327 (92%), Positives = 304/327 (92%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 714 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNRKQSKKMKNWIYVQWIATTKKKYF 773
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 774 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 833
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI
Sbjct: 834 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 893
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
SDNESDRININPFYSIHSKAKIQQSLSQNHGTIR+LLNRNKEC+SLIILSSSNCFQTR F
Sbjct: 894 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRILLNRNKECRSLIILSSSNCFQTRPF 953
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
NNVKYHNEIKKGINKFKKDP+IPIQNSLGPLGIALPISNFYSFYRLITHNQISIT
Sbjct: 954 NNVKYHNEIKKGINKFKKDPLIPIQNSLGPLGIALPISNFYSFYRLITHNQISITKNLKN 1013
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQVIKYYLMDENEKIYKP
Sbjct: 1014 LQLDKLKETFQVIKYYLMDENEKIYKP 1040
Score = 144 bits (363), Expect(2) = 0.0
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR
Sbjct: 641 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 700
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 701 VGGLVRLEKKKK 712
>YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.1 RpoC2
(chloroplast) [Wisteria sinensis]
Length = 1367
Score = 564 bits (1453), Expect(2) = 0.0
Identities = 290/327 (88%), Positives = 296/327 (90%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 699 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKNWKESKKTKNWIYVQWIATTKKKYF 758
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSI+GISDTRIQLVR
Sbjct: 759 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIQGISDTRIQLVR 818
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNW+QDKKSSSI EALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSGSGLI
Sbjct: 819 TCLVLNWNQDKKSSSIAEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGSGLI 878
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
SDNESD+ININPFYSIHS AKIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 879 SDNESDQININPFYSIHSTAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 938
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
NNVKYHN IKKGINKFKKDPII I+NSLGPLGIAL I+NFYSFYRLITHNQISIT
Sbjct: 939 NNVKYHNGIKKGINKFKKDPIISIKNSLGPLGIALQIANFYSFYRLITHNQISIT---KN 995
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQVIKYY MDENEKIYKP
Sbjct: 996 LQLDKLKETFQVIKYYFMDENEKIYKP 1022
Score = 134 bits (337), Expect(2) = 0.0
Identities = 68/72 (94%), Positives = 69/72 (95%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPK Q KVDRFFFIPEEVHILPESSSIMVRNNSI+GI TPITLNIRSR
Sbjct: 626 EDLIEYRGIKELKPKYQNKVDRFFFIPEEVHILPESSSIMVRNNSIVGIGTPITLNIRSR 685
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 686 VGGLVRLEKKKK 697
>YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC10039.1 RpoC2
(chloroplast) [Wisteria floribunda]
Length = 1367
Score = 563 bits (1450), Expect(2) = 0.0
Identities = 289/327 (88%), Positives = 296/327 (90%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSGDIHFPGEMDKISRHSAILIPPGTV KNWIYVQWIATTKKKYF
Sbjct: 699 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVKKKIWKESKKTKNWIYVQWIATTKKKYF 758
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSI+GISDTRIQLVR
Sbjct: 759 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIQGISDTRIQLVR 818
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNW+QDKKSSSI EALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSGSGLI
Sbjct: 819 TCLVLNWNQDKKSSSIAEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGSGLI 878
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
SDNE+D+ININPFYSIHS AKIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 879 SDNETDQININPFYSIHSTAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 938
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
NNVKYHN IKKGINKFKKDPII I+NSLGPLGIAL I+NFYSFYRLITHNQISIT
Sbjct: 939 NNVKYHNGIKKGINKFKKDPIISIKNSLGPLGIALQIANFYSFYRLITHNQISIT---KN 995
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQVIKYY MDENEKIYKP
Sbjct: 996 LQLDKLKETFQVIKYYFMDENEKIYKP 1022
Score = 134 bits (337), Expect(2) = 0.0
Identities = 68/72 (94%), Positives = 69/72 (95%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPK Q KVDRFFFIPEEVHILPESSSIMVRNNSI+GI TPITLNIRSR
Sbjct: 626 EDLIEYRGIKELKPKYQNKVDRFFFIPEEVHILPESSSIMVRNNSIVGIGTPITLNIRSR 685
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 686 VGGLVRLEKKKK 697
>YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL97397.1 RpoC2
(chloroplast) [Caragana microphylla]
Length = 1372
Score = 541 bits (1395), Expect(2) = 0.0
Identities = 282/327 (86%), Positives = 289/327 (88%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
+ELKIFSG+IHFPGEMDKISRHSAILIPPGTV NW YVQWIATTKKKYF
Sbjct: 716 MELKIFSGNIHFPGEMDKISRHSAILIPPGTVKKKWKESKKMN-NWTYVQWIATTKKKYF 774
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 834
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR D SG G I
Sbjct: 835 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDSSGLGCI 894
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
SDNESDRININPF SIHSKAKIQQS SQN GTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 895 SDNESDRININPFLSIHSKAKIQQSRSQNQGTIRMLLNRNKECRSLIILSSSNCFQMRPF 954
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
NNVKYHN I+KGINKFKKD IIPI+NSLGPLGIAL I+NFYSFYR ITHNQISIT
Sbjct: 955 NNVKYHNGIRKGINKFKKDSIIPIKNSLGPLGIALQIANFYSFYRSITHNQISIT---KN 1011
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQVIKYYLMDENEKI KP
Sbjct: 1012 LQLDKFKETFQVIKYYLMDENEKILKP 1038
Score = 136 bits (343), Expect(2) = 0.0
Identities = 68/72 (94%), Positives = 70/72 (97%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSR
Sbjct: 643 EDLIEYRGIKELKPKSQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSR 702
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 703 VGGLVRLEKKKK 714
>YP_002149735.1 RNA polymerase beta' subunit [Cicer arietinum] ACH41072.1 RNA
polymerase beta' subunit (chloroplast) [Cicer arietinum]
Length = 1376
Score = 509 bits (1312), Expect(2) = e-174
Identities = 263/329 (79%), Positives = 279/329 (84%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSG+IHFPGEMDKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 715 IELKIFSGNIHFPGEMDKISRHSSILIPPGTVKKKKRKEAKKINNWIYVQWIATTKKKYF 774
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLEL+VLNYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELRVLNYILYGNGKSIRGISDTRIQLVR 834
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYF+RIDLVKSH SYIRKR DPSG GLI
Sbjct: 835 TCLVLNWDQGKKSSSIEEAPASFVEVSTNGLIEYFIRIDLVKSHMSYIRKRNDPSGLGLI 894
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
D ESDR+NINPF+SIHSK KIQQSL QNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 895 PDKESDRVNINPFFSIHSKTKIQQSLIQNHGTIRMLLNRNKECRSWIILSSSNCFQMRPF 954
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KKDPIIPI +NSLGPLGIAL ++N+YSFYRLITHNQ+SIT
Sbjct: 955 NNVKYHNGI-------KKDPIIPINNKNSLGPLGIALQVANYYSFYRLITHNQVSIT--- 1004
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E V+KYYLMDEN+KI+KP
Sbjct: 1005 NNLQLDKLIEICHVMKYYLMDENDKIFKP 1033
Score = 133 bits (334), Expect(2) = e-174
Identities = 66/72 (91%), Positives = 69/72 (95%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPK Q KVDRFFFIPEEVHILPESSSIM+RNNS++GI TPITLNIRSR
Sbjct: 642 EDLIEYRGIKELKPKYQNKVDRFFFIPEEVHILPESSSIMIRNNSLVGIGTPITLNIRSR 701
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 702 VGGLVRLEKKKK 713
>AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofera tinctoria]
Length = 1376
Score = 510 bits (1313), Expect(2) = e-174
Identities = 268/328 (81%), Positives = 280/328 (85%), Gaps = 1/328 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGT-VXXXXXXXXXXXKNWIYVQWIATTKKKY 806
IELKIFSG+I+FPGEMDKISRHSAILIPPGT V KNWIYVQWI TTKKKY
Sbjct: 717 IELKIFSGNIYFPGEMDKISRHSAILIPPGTTVKKKNSKESKKKKNWIYVQWITTTKKKY 776
Query: 805 FVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLV 626
FVLVRPVILYEI D IN VKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLV
Sbjct: 777 FVLVRPVILYEIADGINLVKLFPQDLFQERDNLELKVINYILYGNGKSIRGISDTRIQLV 836
Query: 625 RTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGL 446
RTCLVLNWDQDKKSSSIEEA ASFVEVSTNGLI FLRIDLVKSH SY RKR D SGSGL
Sbjct: 837 RTCLVLNWDQDKKSSSIEEARASFVEVSTNGLIGDFLRIDLVKSHISYFRKRNDLSGSGL 896
Query: 445 ISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRS 266
ISDNES NINPFYSI+SKAKIQQSLSQNHGTIRMLLNRNKEC+SLIILSS NCFQ
Sbjct: 897 ISDNESHPTNINPFYSIYSKAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSYNCFQMGL 956
Query: 265 FNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXX 86
FN+ KYHN IK+GINK K+DPIIPI+NSLGPLGIAL +SNF SFY LITHNQISI
Sbjct: 957 FNDGKYHNGIKEGINKLKRDPIIPIKNSLGPLGIALQVSNFDSFYHLITHNQISIN---Q 1013
Query: 85 XXXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQV+KYYLMDENE+IYKP
Sbjct: 1014 NWKLDKLKETFQVLKYYLMDENERIYKP 1041
Score = 132 bits (331), Expect(2) = e-174
Identities = 64/70 (91%), Positives = 68/70 (97%)
Frame = -2
Query: 1229 LIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVG 1050
LIEYRG+KE KPK QIKVDRFFFIPEEVHILPESSSIMVRNNSI+G+DTPITLNIRSRVG
Sbjct: 646 LIEYRGVKEFKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSIVGVDTPITLNIRSRVG 705
Query: 1049 GLVRLEKKKK 1020
GLVR+EKKKK
Sbjct: 706 GLVRVEKKKK 715
>AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus officinalis]
AJE71662.1 RNA polymerase beta'' subunit (plastid)
[Melilotus albus]
Length = 1376
Score = 505 bits (1300), Expect(2) = e-173
Identities = 266/329 (80%), Positives = 281/329 (85%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSG+IHFPGEMDKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 716 IELKIFSGNIHFPGEMDKISRHSSILIPPGTVKKKKWKESKKINNWIYVQWIATTKKKYF 775
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+F KLFP+DLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 776 VLVRPVILYEIPDSIHFGKLFPKDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 835
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 836 TCLVLNWDQAKKSSSIEEAPASFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 895
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESD ININPF+SIHSKAKIQQSLSQNHGTIRMLLNRNKE +S IILSSSNCFQ R F
Sbjct: 896 ADNESDPININPFFSIHSKAKIQQSLSQNHGTIRMLLNRNKEYRSWIILSSSNCFQMRPF 955
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVK+HN I KK+PIIPI NSLGPLGIAL ++NFYS YRLITHNQI+I
Sbjct: 956 NNVKFHNGI-------KKNPIIPINNNNSLGPLGIALQVANFYSLYRLITHNQIAI---I 1005
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
KE FQVIKYYLMDENEKI+KP
Sbjct: 1006 KNLQLDKLKEIFQVIKYYLMDENEKIFKP 1034
Score = 133 bits (334), Expect(2) = e-173
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 643 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 702
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 703 VGGLVRLEKKKK 714
>YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medicago hybrida]
YP_009141687.1 RNA polymerase beta' subunit (chloroplast)
[Medicago papillosa] AIL56137.1 RNA polymerase beta'
subunit (chloroplast) [Medicago hybrida] AIL56212.1 RNA
polymerase beta' subunit (chloroplast) [Medicago
papillosa] AMC32363.1 RNA polymerase beta'' subunit
(chloroplast) [Medicago sativa] ANS57907.1 RNA polymerase
beta' subunit (chloroplast) [Medicago sativa]
Length = 1370
Score = 499 bits (1285), Expect(2) = e-171
Identities = 262/329 (79%), Positives = 278/329 (84%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWI TTKKKYF
Sbjct: 714 IELKIFSGNIHFPGERDKISRHSSILIPPGTVKKKWKESKKIH-NWIYVQWITTTKKKYF 772
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 892
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESDRININPF+SIHSKAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHSKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 952
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KK+P IPI NSLGPLGIA + NFYS YRLITHNQISI
Sbjct: 953 NNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYRLITHNQISI---M 1002
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E FQVIKYYLMDEN+KI+KP
Sbjct: 1003 KNFQLDKITEIFQVIKYYLMDENDKIFKP 1031
Score = 133 bits (334), Expect(2) = e-171
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 641 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 700
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 701 VGGLVRLEKKKK 712
>AHY32883.1 RNA polymerase beta' subunit (chloroplast) [Ceratonia siliqua]
Length = 1377
Score = 493 bits (1269), Expect(2) = e-170
Identities = 258/327 (78%), Positives = 273/327 (83%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSGDI+FPGEMDKISRHS ILIP GTV KNWIYVQWI TKKKYF
Sbjct: 720 IELKIFSGDIYFPGEMDKISRHSGILIPLGTVKKKNSTESKKFKNWIYVQWITPTKKKYF 779
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVI+YEI D IN VKLFPQDL QERDNLELKV+NYILYGNGK I+GISDT IQLVR
Sbjct: 780 VLVRPVIIYEIADGINLVKLFPQDLLQERDNLELKVVNYILYGNGKPIQGISDTSIQLVR 839
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWD+DKKSSSIEE ASFVEVSTNGLI FLRIDLVKSH SYIRKR DPSGS LI
Sbjct: 840 TCLVLNWDRDKKSSSIEETRASFVEVSTNGLIRDFLRIDLVKSHISYIRKRNDPSGSRLI 899
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESDR NINPFYSI+SKAKIQQSLSQNHGTIRMLLNRNKEC+SL ILSS NCFQ F
Sbjct: 900 ADNESDRTNINPFYSIYSKAKIQQSLSQNHGTIRMLLNRNKECRSLRILSSVNCFQMGPF 959
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
N+VKYHN IK+ I K+DPIIPI+NSLGPLGIAL ++ FYSFYRLITHNQISIT
Sbjct: 960 NDVKYHNVIKESI---KRDPIIPIRNSLGPLGIALQVAKFYSFYRLITHNQISIT---KY 1013
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQV KYYLMDEN +IYKP
Sbjct: 1014 LQLDNLKETFQVFKYYLMDENGRIYKP 1040
Score = 134 bits (337), Expect(2) = e-170
Identities = 65/72 (90%), Positives = 70/72 (97%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRG+KE KPK Q+KVDRFFFIPEEVHILPESSSIMVRNNSIIG+DTPIT+NIRSR
Sbjct: 647 EDLIEYRGVKEFKPKYQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVDTPITVNIRSR 706
Query: 1055 VGGLVRLEKKKK 1020
VGGLVR+EKKKK
Sbjct: 707 VGGLVRVEKKKK 718
>AIJ28040.1 RNA polymerase beta' subunit (chloroplast) [Trifolium lupinaster]
Length = 1367
Score = 495 bits (1275), Expect(2) = e-170
Identities = 264/329 (80%), Positives = 278/329 (84%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSG+IHFPGE+DKISRHSAILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 716 IELKIFSGNIHFPGEVDKISRHSAILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 774
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSIHFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 834
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKSSSIEEA ASFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 835 TCLVLNWDQVKKSSSIEEAPASFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 894
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNE D ININPF+SIHSKAKIQQS+SQNHGTIRMLLNRNKE +S IILSSSNCFQ RSF
Sbjct: 895 ADNELDGININPFFSIHSKAKIQQSISQNHGTIRMLLNRNKESRSWIILSSSNCFQMRSF 954
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KKDP IPI +NSLGPLGIAL ++NF S YR T+NQISI
Sbjct: 955 NNVKYHNGI-------KKDPRIPINNKNSLGPLGIALQVANFDSLYRFKTYNQISI---I 1004
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E FQVIKYYLMDENEKI+KP
Sbjct: 1005 KNLQLDKLTEIFQVIKYYLMDENEKIFKP 1033
Score = 132 bits (331), Expect(2) = e-170
Identities = 65/72 (90%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 643 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 702
Query: 1055 VGGLVRLEKKKK 1020
VGGL+RLEKKKK
Sbjct: 703 VGGLLRLEKKKK 714
>YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus]
AMQ99218.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus mongholicus]
Length = 1376
Score = 494 bits (1271), Expect(2) = e-170
Identities = 267/327 (81%), Positives = 276/327 (84%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYF
Sbjct: 720 IELKIFSGNIHFPGEMDKISRPSAILIPPRTVKKKRKESKKLN-NWTYVQWITTTKKKYF 778
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 779 VLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVR 838
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GLI
Sbjct: 839 TCLVLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGLI 898
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
SD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 899 SD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 956
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
NNVK N I KKDPII I+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 957 NNVKDPNGI-------KKDPIIAIKNSLGPLGIALQIANFYSFSRLITHNQISIT---KN 1006
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQVIKYYLMDENE I+KP
Sbjct: 1007 LQLDKLKETFQVIKYYLMDENETIFKP 1033
Score = 133 bits (334), Expect(2) = e-170
Identities = 67/72 (93%), Positives = 69/72 (95%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSR
Sbjct: 647 EDLIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSR 706
Query: 1055 VGGLVRLEKKKK 1020
V GLVRLEKKKK
Sbjct: 707 VRGLVRLEKKKK 718
>YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus
var. nakaianus] ALH42736.1 RNA polymerase beta'' subunit
(chloroplast) [Astragalus mongholicus var. nakaianus]
ANK78900.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus membranaceus var. membranaceus]
Length = 1372
Score = 494 bits (1271), Expect(2) = e-170
Identities = 267/327 (81%), Positives = 276/327 (84%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYF
Sbjct: 716 IELKIFSGNIHFPGEMDKISRPSAILIPPRTVKKKRKESKKLN-NWTYVQWITTTKKKYF 774
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 775 VLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVR 834
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GLI
Sbjct: 835 TCLVLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGLI 894
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
SD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R F
Sbjct: 895 SD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPF 952
Query: 262 NNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXX 83
NNVK N I KKDPII I+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 953 NNVKDPNGI-------KKDPIIAIKNSLGPLGIALQIANFYSFSRLITHNQISIT---KN 1002
Query: 82 XXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQVIKYYLMDENE I+KP
Sbjct: 1003 LQLDKLKETFQVIKYYLMDENETIFKP 1029
Score = 133 bits (334), Expect(2) = e-170
Identities = 67/72 (93%), Positives = 69/72 (95%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSR
Sbjct: 643 EDLIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSR 702
Query: 1055 VGGLVRLEKKKK 1020
V GLVRLEKKKK
Sbjct: 703 VRGLVRLEKKKK 714
>AJE71804.1 RNA polymerase beta'' subunit (plastid) [Amorpha canescens]
Length = 1398
Score = 493 bits (1268), Expect(2) = e-169
Identities = 258/328 (78%), Positives = 275/328 (83%), Gaps = 1/328 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSGDI+FPGEMDKISRHS ILIP TV NWIYVQWI TTKKKYF
Sbjct: 716 IELKIFSGDIYFPGEMDKISRHSGILIPSRTVKKNSKESKKIK-NWIYVQWITTTKKKYF 774
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEI D IN VK FPQDLFQERDNLELKVLNYILYGNGKSIRGISDT IQLVR
Sbjct: 775 VLVRPVILYEITDGINLVKFFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTSIQLVR 834
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQDKK+SSIEEA ASFVEVSTNGLI FL+IDL KSH YIRKR DPSGS LI
Sbjct: 835 TCLVLNWDQDKKNSSIEEARASFVEVSTNGLIGDFLKIDLAKSHILYIRKRNDPSGSRLI 894
Query: 442 SDNESDRININPFYSIHS-KAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRS 266
S+N+SDRININPF+SI+S K KIQQSLSQNHGTIRMLLNR KEC+SLIILSSSNCFQ
Sbjct: 895 SNNKSDRININPFFSIYSNKTKIQQSLSQNHGTIRMLLNRKKECRSLIILSSSNCFQMGP 954
Query: 265 FNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXX 86
FNNVKYHN +K+GIN K+DPIIPI+NSLGPLGIAL ++NFYSF RLIT+NQI IT
Sbjct: 955 FNNVKYHNGVKEGINIIKRDPIIPIKNSLGPLGIALQVANFYSFNRLITYNQILIT---K 1011
Query: 85 XXXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQ+ KYYLMDENE+IYKP
Sbjct: 1012 NLQLVKLKETFQIFKYYLMDENERIYKP 1039
Score = 134 bits (336), Expect(2) = e-169
Identities = 64/72 (88%), Positives = 70/72 (97%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRG+KE KPK QIK+DRFFFIPEE+HILPESSSIMVRNNSIIG+DTPITLNIRSR
Sbjct: 643 EDLIEYRGVKEFKPKYQIKIDRFFFIPEEMHILPESSSIMVRNNSIIGVDTPITLNIRSR 702
Query: 1055 VGGLVRLEKKKK 1020
VGGLV++EKKKK
Sbjct: 703 VGGLVQIEKKKK 714
>YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula]
Length = 1374
Score = 493 bits (1270), Expect(2) = e-169
Identities = 258/329 (78%), Positives = 276/329 (83%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 718 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 776
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 777 VLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 836
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 837 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 896
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 897 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 956
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KK+P IPI NSLGPLGIA + NFYS Y LITHNQISI
Sbjct: 957 NNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISI---M 1006
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E FQVIKYYLMDEN+KI+KP
Sbjct: 1007 KNFQLDKITEIFQVIKYYLMDENDKIFKP 1035
Score = 133 bits (334), Expect(2) = e-169
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 645 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 704
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 705 VGGLVRLEKKKK 716
>AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
AFR60049.1 RNA polymerase beta'' subunit (plastid)
[Medicago truncatula]
Length = 1370
Score = 493 bits (1270), Expect(2) = e-169
Identities = 258/329 (78%), Positives = 276/329 (83%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 714 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 772
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 892
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 952
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KK+P IPI NSLGPLGIA + NFYS Y LITHNQISI
Sbjct: 953 NNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISI---M 1002
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E FQVIKYYLMDEN+KI+KP
Sbjct: 1003 KNFQLDKITEIFQVIKYYLMDENDKIFKP 1031
Score = 133 bits (334), Expect(2) = e-169
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 641 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 700
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 701 VGGLVRLEKKKK 712
>XP_003606032.1 DNA-directed RNA polymerase subunit beta [Medicago truncatula]
AES88229.1 DNA-directed RNA polymerase subunit beta
[Medicago truncatula]
Length = 1368
Score = 493 bits (1270), Expect(2) = e-169
Identities = 258/329 (78%), Positives = 276/329 (83%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 718 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 776
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 777 VLVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 836
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 837 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 896
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 897 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 956
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KK+P IPI NSLGPLGIA + NFYS Y LITHNQISI
Sbjct: 957 NNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISI---M 1006
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E FQVIKYYLMDEN+KI+KP
Sbjct: 1007 KNFQLDKITEIFQVIKYYLMDENDKIFKP 1035
Score = 133 bits (334), Expect(2) = e-169
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 645 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 704
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 705 VGGLVRLEKKKK 716
>AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago truncatula f.
tricycla]
Length = 1370
Score = 493 bits (1269), Expect(2) = e-169
Identities = 259/329 (78%), Positives = 276/329 (83%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELK+FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYF
Sbjct: 714 IELKLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKIN-NWIYVQWIATTKKKYF 772
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+F KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 773 VLVRPVILYEIPDSIDFRKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 832
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI
Sbjct: 833 TCLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLI 892
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 893 ADNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 952
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KK+P IPI NSLGPLGIA + NFYS YRLITHNQISI
Sbjct: 953 NNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYRLITHNQISI---M 1002
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E FQVIKYYLMDEN+KI+KP
Sbjct: 1003 KNFQLDKITEIFQVIKYYLMDENDKIFKP 1031
Score = 133 bits (334), Expect(2) = e-169
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 641 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 700
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 701 VGGLVRLEKKKK 712
>YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medicago falcata]
AOG66214.1 RNA polymerase beta'' subunit (chloroplast)
[Medicago sativa] APC60490.1 RNA polymerase beta''
subunit (chloroplast) [Medicago falcata]
Length = 1374
Score = 493 bits (1268), Expect(2) = e-169
Identities = 259/329 (78%), Positives = 277/329 (84%), Gaps = 2/329 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
IELKIFSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWI T+KKKYF
Sbjct: 718 IELKIFSGNIHFPGERDKISRHSSILIPPGTVKKKWKESKKIN-NWIYVQWITTSKKKYF 776
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVR
Sbjct: 777 VLVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVR 836
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI
Sbjct: 837 TCLVLNWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLI 896
Query: 442 SDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSF 263
+DNESDRININPF+SIHSKAK+++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R F
Sbjct: 897 ADNESDRININPFFSIHSKAKMKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPF 956
Query: 262 NNVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXX 89
NNVKYHN I KK+P IPI NSLGPLGIA + NF S YRLITHNQISI
Sbjct: 957 NNVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFDSLYRLITHNQISI---M 1006
Query: 88 XXXXXXXXKETFQVIKYYLMDENEKIYKP 2
E FQVIKYYLMDEN+KI+KP
Sbjct: 1007 KNFQLDKITEIFQVIKYYLMDENDKIFKP 1035
Score = 133 bits (334), Expect(2) = e-169
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
ED IEYRGIKELKPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSR
Sbjct: 645 EDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSR 704
Query: 1055 VGGLVRLEKKKK 1020
VGGLVRLEKKKK
Sbjct: 705 VGGLVRLEKKKK 716
>AJE72656.1 RNA polymerase beta'' subunit (plastid) [Amorpha fruticosa]
Length = 1398
Score = 491 bits (1265), Expect(2) = e-169
Identities = 257/328 (78%), Positives = 275/328 (83%), Gaps = 1/328 (0%)
Frame = -3
Query: 982 IELKIFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXKNWIYVQWIATTKKKYF 803
+ELKIFSGDI+FPGEMDKISRHS ILIP TV NWIYVQWI TTKKKYF
Sbjct: 716 MELKIFSGDIYFPGEMDKISRHSGILIPSRTVKKNSKESKKIK-NWIYVQWITTTKKKYF 774
Query: 802 VLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVR 623
VLVRPVILYEI D IN VK FPQDLFQERDNLELKVLNYILYGNGKSIRGISDT IQLVR
Sbjct: 775 VLVRPVILYEITDGINLVKFFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTSIQLVR 834
Query: 622 TCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLI 443
TCLVLNWDQDKK+SSIEEA ASFVEVSTNGLI FL+IDL KSH YIRKR DPSGS LI
Sbjct: 835 TCLVLNWDQDKKNSSIEEARASFVEVSTNGLIGDFLKIDLAKSHILYIRKRNDPSGSRLI 894
Query: 442 SDNESDRININPFYSIHS-KAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRS 266
S+N+SDRININPF+SI+S K KIQQSLSQNHGTIRMLLNR KEC+SLIILSSSNCFQ
Sbjct: 895 SNNKSDRININPFFSIYSNKTKIQQSLSQNHGTIRMLLNRKKECRSLIILSSSNCFQMGP 954
Query: 265 FNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXX 86
FNNVKYHN +K+GIN K+DPIIPI+NSLGPLGIAL ++NFYSF RLIT+NQI IT
Sbjct: 955 FNNVKYHNGVKEGINIIKRDPIIPIKNSLGPLGIALQVANFYSFNRLITYNQILIT---K 1011
Query: 85 XXXXXXXKETFQVIKYYLMDENEKIYKP 2
KETFQ+ KYYLMDENE+IYKP
Sbjct: 1012 NLQLVKLKETFQIFKYYLMDENERIYKP 1039
Score = 134 bits (336), Expect(2) = e-169
Identities = 64/72 (88%), Positives = 70/72 (97%)
Frame = -2
Query: 1235 EDLIEYRGIKELKPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSR 1056
EDLIEYRG+KE KPK QIK+DRFFFIPEE+HILPESSSIMVRNNSIIG+DTPITLNIRSR
Sbjct: 643 EDLIEYRGVKEFKPKYQIKIDRFFFIPEEMHILPESSSIMVRNNSIIGVDTPITLNIRSR 702
Query: 1055 VGGLVRLEKKKK 1020
VGGLV++EKKKK
Sbjct: 703 VGGLVQIEKKKK 714