BLASTX nr result
ID: Glycyrrhiza33_contig00003105
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza33_contig00003105
(4990 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycy... 746 0.0
AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrh... 732 0.0
YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.... 717 0.0
YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC1003... 717 0.0
YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 699 0.0
YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 699 0.0
AJE72230.1 RNA polymerase beta'' subunit (plastid) [Oxytropis la... 698 0.0
YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL973... 696 0.0
AJE72727.1 RNA polymerase beta'' subunit (plastid) [Astragalus c... 693 0.0
AJE71733.1 RNA polymerase beta'' subunit (plastid) [Astragalus c... 691 0.0
AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus of... 688 0.0
AJE71946.1 RNA polymerase beta'' subunit (plastid) [Baptisia bra... 677 0.0
YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medic... 676 0.0
YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medi... 676 0.0
YP_009141275.1 RNA polymerase beta' subunit (chloroplast) [Lathy... 674 0.0
P12227.1 RecName: Full=DNA-directed RNA polymerase subunit beta'... 666 0.0
AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago... 670 0.0
AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 670 0.0
AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 670 0.0
YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula] 670 0.0
>YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycyrrhiza glabra]
AGU00070.1 RNA polymerase beta' subunit (chloroplast)
[Glycyrrhiza glabra]
Length = 1388
Score = 746 bits (1927), Expect = 0.0
Identities = 374/376 (99%), Positives = 376/376 (100%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTF+IISL
Sbjct: 1013 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISL 1072
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE
Sbjct: 1073 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 1132
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1133 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 1192
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1193 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1252
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1253 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1312
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEK+NNFFEVEIRNILFHHRK
Sbjct: 1313 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRK 1372
Query: 1082 LFDFFISKNLCDTSEI 1129
LFDFFISKNLCDTSEI
Sbjct: 1373 LFDFFISKNLCDTSEI 1388
>AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrhiza lepidota]
Length = 1388
Score = 732 bits (1889), Expect = 0.0
Identities = 368/376 (97%), Positives = 370/376 (98%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHN CEKTF+IISL
Sbjct: 1013 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNYCEKTFTIISL 1072
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL+E
Sbjct: 1073 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYE 1132
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1133 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 1192
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1193 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1252
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1253 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1312
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMH SRSRQ NKITLEKK NFFEVEIRNILFHHRK
Sbjct: 1313 IDWLKGLKENVVLGGMIPVGTGFKRIMHHSRSRQDNKITLEKKKNFFEVEIRNILFHHRK 1372
Query: 1082 LFDFFISKNLCDTSEI 1129
LFDFF SKNLCDTSEI
Sbjct: 1373 LFDFFNSKNLCDTSEI 1388
>YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.1 RpoC2
(chloroplast) [Wisteria sinensis]
Length = 1367
Score = 717 bits (1852), Expect = 0.0
Identities = 358/373 (95%), Positives = 366/373 (98%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYY MDENEKIYKPDLY+NI+LNPFHLNWYFLNHN EKTF+IISL
Sbjct: 995 NLQLDKLKETFQVIKYYFMDENEKIYKPDLYSNIILNPFHLNWYFLNHNYYEKTFTIISL 1054
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLK KSGQV+TVQ+DSVIIRSANPYLATPGATIHGHYGEIL+E
Sbjct: 1055 GQFICENICIAQTKNGPHLKQKSGQVITVQIDSVIIRSANPYLATPGATIHGHYGEILYE 1114
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1115 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 1174
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1175 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1234
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1235 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1294
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGF++IMH SRSRQHNKITLEKK N FEVEIRNILFHHRK
Sbjct: 1295 IDWLKGLKENVVLGGMIPVGTGFQKIMHHSRSRQHNKITLEKKKNLFEVEIRNILFHHRK 1354
Query: 1082 LFDFFISKNLCDT 1120
LFDFFISKNLCDT
Sbjct: 1355 LFDFFISKNLCDT 1367
>YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC10039.1 RpoC2
(chloroplast) [Wisteria floribunda]
Length = 1367
Score = 717 bits (1852), Expect = 0.0
Identities = 358/373 (95%), Positives = 366/373 (98%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYY MDENEKIYKPDLY+NI+LNPFHLNWYFLNHN EKTF+IISL
Sbjct: 995 NLQLDKLKETFQVIKYYFMDENEKIYKPDLYSNIILNPFHLNWYFLNHNYYEKTFTIISL 1054
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLK KSGQV+TVQ+DSVIIRSANPYLATPGATIHGHYGEIL+E
Sbjct: 1055 GQFICENICIAQTKNGPHLKQKSGQVITVQIDSVIIRSANPYLATPGATIHGHYGEILYE 1114
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1115 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 1174
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1175 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1234
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1235 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1294
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGF++IMH SRSRQHNKITLEKK N FEVEIRNILFHHRK
Sbjct: 1295 IDWLKGLKENVVLGGMIPVGTGFQKIMHHSRSRQHNKITLEKKKNLFEVEIRNILFHHRK 1354
Query: 1082 LFDFFISKNLCDT 1120
LFDFFISKNLCDT
Sbjct: 1355 LFDFFISKNLCDT 1367
>YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus
var. nakaianus] ALH42736.1 RNA polymerase beta'' subunit
(chloroplast) [Astragalus mongholicus var. nakaianus]
ANK78900.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus membranaceus var. membranaceus]
Length = 1372
Score = 699 bits (1804), Expect = 0.0
Identities = 350/365 (95%), Positives = 357/365 (97%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKTF+IISL
Sbjct: 1002 NLQLDKLKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTFTIISL 1061
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+E
Sbjct: 1062 GQFICENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYE 1121
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1122 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1181
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1182 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1241
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1242 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1301
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEKK N FEVEIRN+LFHHRK
Sbjct: 1302 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRK 1361
Query: 1082 LFDFF 1096
LFDFF
Sbjct: 1362 LFDFF 1366
>YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus]
AMQ99218.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus mongholicus]
Length = 1376
Score = 699 bits (1804), Expect = 0.0
Identities = 350/365 (95%), Positives = 357/365 (97%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKTF+IISL
Sbjct: 1006 NLQLDKLKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTFTIISL 1065
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+E
Sbjct: 1066 GQFICENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYE 1125
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1126 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1185
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1186 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1245
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1246 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1305
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEKK N FEVEIRN+LFHHRK
Sbjct: 1306 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRK 1365
Query: 1082 LFDFF 1096
LFDFF
Sbjct: 1366 LFDFF 1370
>AJE72230.1 RNA polymerase beta'' subunit (plastid) [Oxytropis lambertii]
Length = 1368
Score = 698 bits (1802), Expect = 0.0
Identities = 349/365 (95%), Positives = 357/365 (97%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYYLMDENEKI+KPDLY+NIVLNPFHLNWYFL+HN CEKT +IISL
Sbjct: 998 NLQLDKLKETFQVIKYYLMDENEKIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTLTIISL 1057
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQF+CENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSANPYLATPGATIHGHYGEIL+E
Sbjct: 1058 GQFLCENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSANPYLATPGATIHGHYGEILYE 1117
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1118 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1177
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1178 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1237
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1238 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1297
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRI HRSRS Q NKITLEKK N FEVEIRN+LFHHRK
Sbjct: 1298 IDWLKGLKENVVLGGMIPVGTGFKRITHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRK 1357
Query: 1082 LFDFF 1096
LFDFF
Sbjct: 1358 LFDFF 1362
>YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL97397.1 RpoC2
(chloroplast) [Caragana microphylla]
Length = 1372
Score = 696 bits (1796), Expect = 0.0
Identities = 347/361 (96%), Positives = 355/361 (98%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDK KETFQVIKYYLMDENEKI KPDLY+NIVLNPFHLNWYFL+HN CEKTF+IISL
Sbjct: 1011 NLQLDKFKETFQVIKYYLMDENEKILKPDLYSNIVLNPFHLNWYFLHHNYCEKTFTIISL 1070
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL+E
Sbjct: 1071 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYE 1130
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDI VTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1131 GDIFVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1190
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1191 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1250
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1251 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1310
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKK N FEVEIRN+LFHH+K
Sbjct: 1311 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKKNLFEVEIRNLLFHHKK 1370
Query: 1082 L 1084
+
Sbjct: 1371 I 1371
>AJE72727.1 RNA polymerase beta'' subunit (plastid) [Astragalus crassicarpus]
Length = 1374
Score = 693 bits (1789), Expect = 0.0
Identities = 346/365 (94%), Positives = 355/365 (97%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKT +IISL
Sbjct: 1004 NLQLDKLKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTLTIISL 1063
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPH KLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+E
Sbjct: 1064 GQFICENICIAQTKNGPHFKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYE 1123
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVE+ILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1124 GDILVTFIYEKSRSGDITQGLPKVEKILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1183
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1184 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1243
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEA+CYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1244 GELIGLLRAERTGRALEEAVCYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1303
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEKK N FEVEIRN+LFHHRK
Sbjct: 1304 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRK 1363
Query: 1082 LFDFF 1096
LFDFF
Sbjct: 1364 LFDFF 1368
>AJE71733.1 RNA polymerase beta'' subunit (plastid) [Astragalus canadensis]
Length = 1372
Score = 691 bits (1783), Expect = 0.0
Identities = 345/365 (94%), Positives = 356/365 (97%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL++N CEKT +IISL
Sbjct: 1002 NLQLDKLKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHNNFCEKTLTIISL 1061
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQTKNGPHLKLKSGQVLTVQ DS+IIRSA PYLATPGATIHGHYGEIL+E
Sbjct: 1062 GQFICENICIAQTKNGPHLKLKSGQVLTVQKDSLIIRSAKPYLATPGATIHGHYGEILYE 1121
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNEC+TRILGIPWG
Sbjct: 1122 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECVTRILGIPWG 1181
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1182 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1241
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1242 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1301
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKI+LEKK N FEVEIRN+LFHHRK
Sbjct: 1302 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKISLEKKKNLFEVEIRNLLFHHRK 1361
Query: 1082 LFDFF 1096
LFDFF
Sbjct: 1362 LFDFF 1366
>AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus officinalis]
AJE71662.1 RNA polymerase beta'' subunit (plastid)
[Melilotus albus]
Length = 1376
Score = 688 bits (1775), Expect = 0.0
Identities = 346/365 (94%), Positives = 356/365 (97%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKLKE FQVIKYYLMDENEKI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISL
Sbjct: 1007 NLQLDKLKEIFQVIKYYLMDENEKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISL 1066
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQ KNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL++
Sbjct: 1067 GQFICENICIAQMKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYQ 1126
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RS+DSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1127 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSVDSISMNLEKRIDAWNECITRILGIPWG 1186
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1187 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1246
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1247 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1306
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRI+HR RSRQHNKITLEKK FEVEIRN+LFHHRK
Sbjct: 1307 IDWLKGLKENVVLGGMIPVGTGFKRIIHRLRSRQHNKITLEKK-KLFEVEIRNLLFHHRK 1365
Query: 1082 LFDFF 1096
LFDFF
Sbjct: 1366 LFDFF 1370
>AJE71946.1 RNA polymerase beta'' subunit (plastid) [Baptisia bracteata]
AJE72372.1 RNA polymerase beta'' subunit (plastid)
[Baptisia alba]
Length = 1383
Score = 677 bits (1748), Expect = 0.0
Identities = 340/376 (90%), Positives = 361/376 (96%), Gaps = 1/376 (0%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDK+KETFQV K+YLMDENE+IYKPDL +NIVLNPFHLNW+F +HN CEKTF+IISL
Sbjct: 1012 NLQLDKVKETFQVFKHYLMDENERIYKPDLCSNIVLNPFHLNWHFFHHNYCEKTFTIISL 1071
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQF+CEN+CIAQTKNGPHLK SGQVLTVQ+DSV+IRSANPYLATPGAT+HGHYGEIL+E
Sbjct: 1072 GQFLCENVCIAQTKNGPHLK--SGQVLTVQIDSVVIRSANPYLATPGATVHGHYGEILYE 1129
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQ+LEVRSIDSISMNLEK++D WNE ITRILGIPWG
Sbjct: 1130 GDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKKVDTWNERITRILGIPWG 1189
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTI QSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1190 FLIGAELTIVQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1249
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRA+LLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1250 GELIGLLRAERTGRALEEAICYRAILLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1309
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLE-KKNNFFEVEIRNILFHHR 1078
IDWLKGLKENVVLGGMIPVGTGFKRIMH RSRQHNKITLE KKNN FE E+R+ILFHHR
Sbjct: 1310 IDWLKGLKENVVLGGMIPVGTGFKRIMH--RSRQHNKITLETKKNNVFEGEMRDILFHHR 1367
Query: 1079 KLFDFFISKNLCDTSE 1126
++FDFFISKNLCDTSE
Sbjct: 1368 EVFDFFISKNLCDTSE 1383
>YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medicago hybrida]
YP_009141687.1 RNA polymerase beta' subunit (chloroplast)
[Medicago papillosa] AIL56137.1 RNA polymerase beta'
subunit (chloroplast) [Medicago hybrida] AIL56212.1 RNA
polymerase beta' subunit (chloroplast) [Medicago
papillosa] AMC32363.1 RNA polymerase beta'' subunit
(chloroplast) [Medicago sativa] ANS57907.1 RNA polymerase
beta' subunit (chloroplast) [Medicago sativa]
Length = 1370
Score = 676 bits (1743), Expect = 0.0
Identities = 339/365 (92%), Positives = 353/365 (96%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
N QLDK+ E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISL
Sbjct: 1004 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYDCEKTFTIISL 1063
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATPGATIHGHYGEIL++
Sbjct: 1064 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPGATIHGHYGEILYQ 1123
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1124 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1183
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1184 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1243
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1244 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1303
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q+NKITL+KK FEVEIRN+LFHHRK
Sbjct: 1304 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSTQYNKITLKKK-KLFEVEIRNLLFHHRK 1362
Query: 1082 LFDFF 1096
LFD F
Sbjct: 1363 LFDSF 1367
>YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medicago falcata]
AOG66214.1 RNA polymerase beta'' subunit (chloroplast)
[Medicago sativa] APC60490.1 RNA polymerase beta''
subunit (chloroplast) [Medicago falcata]
Length = 1374
Score = 676 bits (1743), Expect = 0.0
Identities = 339/365 (92%), Positives = 353/365 (96%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
N QLDK+ E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISL
Sbjct: 1008 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYDCEKTFTIISL 1067
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATPGATIHGHYGEIL++
Sbjct: 1068 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPGATIHGHYGEILYQ 1127
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1128 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1187
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1188 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1247
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1248 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1307
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q+NKITL+KK FEVEIRN+LFHHRK
Sbjct: 1308 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSTQYNKITLKKK-KLFEVEIRNLLFHHRK 1366
Query: 1082 LFDFF 1096
LFD F
Sbjct: 1367 LFDSF 1371
>YP_009141275.1 RNA polymerase beta' subunit (chloroplast) [Lathyrus clymenum]
AIL55800.1 RNA polymerase beta' subunit (chloroplast)
[Lathyrus clymenum]
Length = 1374
Score = 674 bits (1738), Expect = 0.0
Identities = 339/364 (93%), Positives = 350/364 (96%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDK E FQVIKYYLMDENEKI KPDLY+NIVLNPFHLNW+FL+H SCEKTF+IISL
Sbjct: 1006 NLQLDKFTEIFQVIKYYLMDENEKICKPDLYSNIVLNPFHLNWFFLHHFSCEKTFTIISL 1065
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQ ICENICIAQ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATPGATIHGHYGEIL +
Sbjct: 1066 GQLICENICIAQMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPGATIHGHYGEILSQ 1125
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQI E+RSIDSISMNLEKRIDAWNECIT+ILGIPWG
Sbjct: 1126 GDILVTFIYEKSRSGDITQGLPKVEQIFEIRSIDSISMNLEKRIDAWNECITKILGIPWG 1185
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1186 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1245
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLG+TKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1246 GELIGLLRAERTGRALEEAICYRALLLGVTKTSLNTQSFISEASFQETARVLAKAALRGR 1305
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKIT +KK FEVEIRN+ FHHRK
Sbjct: 1306 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITRKKK--LFEVEIRNLWFHHRK 1363
Query: 1082 LFDF 1093
LFDF
Sbjct: 1364 LFDF 1367
>P12227.1 RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
CAA27545.1 unnamed protein product, partial (chloroplast)
[Pisum sativum]
Length = 1163
Score = 666 bits (1718), Expect = 0.0
Identities = 334/364 (91%), Positives = 349/364 (95%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
NLQLDKL E FQVIKYYLMDEN+KI KPDLY+NI+LNPFHLNW+FL+H CEKTF+ ISL
Sbjct: 795 NLQLDKLTEIFQVIKYYLMDENDKICKPDLYSNIILNPFHLNWFFLHHFYCEKTFTRISL 854
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIAQ KN PHLKLKSGQV+ VQMDSVIIRSANPYLATPGATIHGHYGEIL +
Sbjct: 855 GQFICENICIAQMKNRPHLKLKSGQVIIVQMDSVIIRSANPYLATPGATIHGHYGEILSQ 914
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECIT+I+GIPWG
Sbjct: 915 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITKIIGIPWG 974
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSN+FLP
Sbjct: 975 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNIFLP 1034
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLG+TKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1035 GELIGLLRAERTGRALEEAICYRALLLGVTKTSLNTQSFISEASFQETARVLAKAALRGR 1094
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKIT +KK FEVEIRN+LFHHRK
Sbjct: 1095 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITRKKK--LFEVEIRNLLFHHRK 1152
Query: 1082 LFDF 1093
L DF
Sbjct: 1153 LLDF 1156
>AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago truncatula f.
tricycla]
Length = 1370
Score = 670 bits (1729), Expect = 0.0
Identities = 337/365 (92%), Positives = 351/365 (96%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
N QLDK+ E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISL
Sbjct: 1004 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISL 1063
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++
Sbjct: 1064 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQ 1123
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRSGDITQGLPKVE+ILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1124 GDILVTFIYEKSRSGDITQGLPKVERILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1183
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1184 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1243
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1244 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1303
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL KK FEVEIRN+LFHHR
Sbjct: 1304 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITL-KKEKLFEVEIRNLLFHHRN 1362
Query: 1082 LFDFF 1096
LFD F
Sbjct: 1363 LFDSF 1367
>AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
Length = 1370
Score = 670 bits (1728), Expect = 0.0
Identities = 337/365 (92%), Positives = 351/365 (96%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
N QLDK+ E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISL
Sbjct: 1004 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISL 1063
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++
Sbjct: 1064 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQ 1123
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1124 GDILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1183
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1184 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1243
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1244 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1303
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1304 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRN 1362
Query: 1082 LFDFF 1096
LFD F
Sbjct: 1363 LFDSF 1367
>AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
AFR60049.1 RNA polymerase beta'' subunit (plastid)
[Medicago truncatula]
Length = 1370
Score = 670 bits (1728), Expect = 0.0
Identities = 337/365 (92%), Positives = 351/365 (96%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
N QLDK+ E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISL
Sbjct: 1004 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISL 1063
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++
Sbjct: 1064 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQ 1123
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1124 GDILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1183
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1184 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1243
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1244 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1303
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1304 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRN 1362
Query: 1082 LFDFF 1096
LFD F
Sbjct: 1363 LFDSF 1367
>YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula]
Length = 1374
Score = 670 bits (1728), Expect = 0.0
Identities = 337/365 (92%), Positives = 351/365 (96%)
Frame = +2
Query: 2 NLQLDKLKETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFSIISL 181
N QLDK+ E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTF+IISL
Sbjct: 1008 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISL 1067
Query: 182 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 361
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++
Sbjct: 1068 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQ 1127
Query: 362 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 541
GDILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1128 GDILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1187
Query: 542 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 721
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1188 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1247
Query: 722 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 901
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1248 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1307
Query: 902 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKNNFFEVEIRNILFHHRK 1081
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+KK FEVEIRN+LFHHR
Sbjct: 1308 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRN 1366
Query: 1082 LFDFF 1096
LFD F
Sbjct: 1367 LFDSF 1371