BLASTX nr result
ID: Glycyrrhiza30_contig00000491
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza30_contig00000491
(10,533 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycy... 2659 0.0
AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrh... 2618 0.0
YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL973... 2487 0.0
YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.... 2484 0.0
YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC1003... 2482 0.0
AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus of... 2419 0.0
YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 2418 0.0
YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astr... 2411 0.0
AJE71733.1 RNA polymerase beta'' subunit (plastid) [Astragalus c... 2407 0.0
AJE72230.1 RNA polymerase beta'' subunit (plastid) [Oxytropis la... 2406 0.0
YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medi... 2402 0.0
YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medic... 2399 0.0
AJE72727.1 RNA polymerase beta'' subunit (plastid) [Astragalus c... 2394 0.0
YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula] 2392 0.0
AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago... 2387 0.0
AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 2385 0.0
AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago tru... 2385 0.0
AIJ28040.1 RNA polymerase beta' subunit (chloroplast) [Trifolium... 2380 0.0
AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofer... 2365 0.0
AJE72514.1 RNA polymerase beta'' subunit (plastid) [Medicago lup... 2363 0.0
>YP_009027274.1 RNA polymerase beta' subunit (chloroplast) [Glycyrrhiza glabra]
AGU00070.1 RNA polymerase beta' subunit (chloroplast)
[Glycyrrhiza glabra]
Length = 1388
Score = 2659 bits (6892), Expect = 0.0
Identities = 1340/1388 (96%), Positives = 1340/1388 (96%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY
Sbjct: 481 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 540
Query: 3451 SIFNQIKDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP 3630
SIFNQIKDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP
Sbjct: 541 SIFNQIKDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP 600
Query: 3631 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV 3810
INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV
Sbjct: 601 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV 660
Query: 3811 DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXXFS 3990
DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVR FS
Sbjct: 661 DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRLEKKKKKIELKIFS 720
Query: 3991 GDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRPVI 4170
GDIHFPGEMDKISRHSAILIPPGTV NWIYVQWIATTKKKYFVLVRPVI
Sbjct: 721 GDIHFPGEMDKISRHSAILIPPGTVKKKNRKQSKKMKNWIYVQWIATTKKKYFVLVRPVI 780
Query: 4171 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW 4350
LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW
Sbjct: 781 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW 840
Query: 4351 DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR 4530
DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR
Sbjct: 841 DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR 900
Query: 4531 ININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKYHN 4710
ININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKYHN
Sbjct: 901 ININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKYHN 960
Query: 4711 EIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXXXX 4890
EIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISIT
Sbjct: 961 EIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITKNLKNLQLDKLK 1020
Query: 4891 ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICENI 5070
ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICENI
Sbjct: 1021 ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICENI 1080
Query: 5071 CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVTFI 5250
CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVTFI
Sbjct: 1081 CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVTFI 1140
Query: 5251 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 5430
YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT
Sbjct: 1141 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 1200
Query: 5431 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR 5610
IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR
Sbjct: 1201 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR 1260
Query: 5611 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 5790
AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK
Sbjct: 1261 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1320
Query: 5791 ENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFFISK 5970
ENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFFISK
Sbjct: 1321 ENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFFISK 1380
Query: 5971 NLCDTSEI 5994
NLCDTSEI
Sbjct: 1381 NLCDTSEI 1388
>AMC32360.1 RNA polymerase beta'' subunit (chloroplast) [Glycyrrhiza lepidota]
Length = 1388
Score = 2618 bits (6787), Expect = 0.0
Identities = 1321/1388 (95%), Positives = 1328/1388 (95%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPERLL
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERLL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRL TFQ QAIFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLITFQIQAIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRS IHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSSIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCRY AIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRIT+Y
Sbjct: 481 SCRYGAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITDY 540
Query: 3451 SIFNQIKDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP 3630
SIFNQI DHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP
Sbjct: 541 SIFNQIMDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP 600
Query: 3631 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV 3810
INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV
Sbjct: 601 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV 660
Query: 3811 DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXXFS 3990
DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVR FS
Sbjct: 661 DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRLEKKKKKIELKIFS 720
Query: 3991 GDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRPVI 4170
GDIHFPGEMDKISRHSAILIPPGTV NWIYVQWIATTKKKYFVLVRPVI
Sbjct: 721 GDIHFPGEMDKISRHSAILIPPGTVKKKNRKQSKKMKNWIYVQWIATTKKKYFVLVRPVI 780
Query: 4171 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW 4350
LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW
Sbjct: 781 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW 840
Query: 4351 DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR 4530
DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR
Sbjct: 841 DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR 900
Query: 4531 ININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKYHN 4710
ININPFYSIHSKAKIQQSLSQNHGTIR+LLNRNKEC+SLIILSSSNCFQTR FNNVKYHN
Sbjct: 901 ININPFYSIHSKAKIQQSLSQNHGTIRILLNRNKECRSLIILSSSNCFQTRPFNNVKYHN 960
Query: 4711 EIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXXXX 4890
EIKKGINKFKKDP+IPIQNSLGPLGIALPISNFYSFYRLITHNQISIT
Sbjct: 961 EIKKGINKFKKDPLIPIQNSLGPLGIALPISNFYSFYRLITHNQISITKNLKNLQLDKLK 1020
Query: 4891 ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICENI 5070
ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHN CEKTFTIISLGQFICENI
Sbjct: 1021 ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNYCEKTFTIISLGQFICENI 1080
Query: 5071 CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVTFI 5250
CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL+EGDILVTFI
Sbjct: 1081 CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYEGDILVTFI 1140
Query: 5251 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 5430
YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT
Sbjct: 1141 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 1200
Query: 5431 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR 5610
IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLR
Sbjct: 1201 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLR 1260
Query: 5611 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 5790
AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK
Sbjct: 1261 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1320
Query: 5791 ENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFFISK 5970
ENVVLGGMIPVGTGFKRIMH SRSRQ NKITLEK+ NFFEVEIRNILFHHRKLFDFF SK
Sbjct: 1321 ENVVLGGMIPVGTGFKRIMHHSRSRQDNKITLEKKKNFFEVEIRNILFHHRKLFDFFNSK 1380
Query: 5971 NLCDTSEI 5994
NLCDTSEI
Sbjct: 1381 NLCDTSEI 1388
>YP_009334191.1 RpoC2 (chloroplast) [Caragana microphylla] APL97397.1 RpoC2
(chloroplast) [Caragana microphylla]
Length = 1372
Score = 2487 bits (6447), Expect = 0.0
Identities = 1261/1375 (91%), Positives = 1286/1375 (93%), Gaps = 2/1375 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLI RLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLIRRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
+QTLIGRVLADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 VQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR DAI FLLR+DQDQI+IHSLSTGKRNISN LVSNDQVKHKL SFNTFGTKE IT+Y
Sbjct: 481 SCRSDAIHFLLRKDQDQIHIHSLSTGKRNISNPLVSNDQVKHKLFSFNTFGTKERGITDY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SIFN+I DHCH MYPAIFHDT LLAKRRRNRF+IPFP Q IQERKNELM PSGVSIE
Sbjct: 541 SIFNKIICTDHCHLMYPAIFHDTFSLLAKRRRNRFLIPFPFQPIQERKNELMPPSGVSIE 600
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIF RNSIFAYFDDPQYRRQSSGITKYRTIGI+SIFQKEDLIEYRGIKELKPK QI
Sbjct: 601 IPINGIFQRNSIFAYFDDPQYRRQSSGITKYRTIGINSIFQKEDLIEYRGIKELKPKSQI 660
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSRVGGLVR
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSRVGGLVRLEKKKKKMELKI 720
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGEMDKISRHSAILIPPGTV NW YVQWIATTKKKYFVLVRP
Sbjct: 721 FSGNIHFPGEMDKISRHSAILIPPGTV-KKKWKESKKMNNWTYVQWIATTKKKYFVLVRP 779
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+FVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 780 VILYEIPDSIHFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 839
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR D SG G ISDNES
Sbjct: 840 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDSSGLGCISDNES 899
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF SIHSKAKIQQS SQN GTIRMLLNRNKEC+SLIILSSSNCFQ R FNNVKY
Sbjct: 900 DRININPFLSIHSKAKIQQSRSQNQGTIRMLLNRNKECRSLIILSSSNCFQMRPFNNVKY 959
Query: 4705 HNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXX 4884
HN I+KGINKFKKD IIPI+NSLGPLGIAL I+NFYSFYR ITHNQISIT
Sbjct: 960 HNGIRKGINKFKKDSIIPIKNSLGPLGIALQIANFYSFYRSITHNQISIT---KNLQLDK 1016
Query: 4885 XXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICE 5064
ETFQVIKYYLMDENEKI KPDLY+NIVLNPFHLNWYFL+HN CEKTFTIISLGQFICE
Sbjct: 1017 FKETFQVIKYYLMDENEKILKPDLYSNIVLNPFHLNWYFLHHNYCEKTFTIISLGQFICE 1076
Query: 5065 NICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVT 5244
NICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL+EGDI VT
Sbjct: 1077 NICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYEGDIFVT 1136
Query: 5245 FIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 5424
FIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE
Sbjct: 1137 FIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 1196
Query: 5425 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 5604
LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL
Sbjct: 1197 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 1256
Query: 5605 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 5784
LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1257 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1316
Query: 5785 LKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKL 5949
LKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEK+ N FEVEIRN+LFHH+K+
Sbjct: 1317 LKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKKKNLFEVEIRNLLFHHKKI 1371
>YP_009233395.1 RpoC2 (chloroplast) [Wisteria sinensis] AMB27275.1 RpoC2
(chloroplast) [Wisteria sinensis]
Length = 1367
Score = 2484 bits (6437), Expect = 0.0
Identities = 1266/1385 (91%), Positives = 1286/1385 (92%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEM PNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMTPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRL T QTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLITLQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLV PTRTRHGYPAFLCNIDLYVTIESDD+IHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVQPTRTRHGYPAFLCNIDLYVTIESDDVIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR DAI FLL +DQDQ NIH S GKRNISNLLVSNDQVK KL SFNTFGTKE RIT+Y
Sbjct: 481 SCRSDAISFLLCKDQDQSNIH--SPGKRNISNLLVSNDQVKQKLWSFNTFGTKERRITDY 538
Query: 3451 SIFNQIKDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP 3630
SIFNQI SDLLAKRRRNRFIIPFP QSIQERKNE M PSGVSIEIP
Sbjct: 539 SIFNQI-------------ICSDLLAKRRRNRFIIPFPFQSIQERKNERMPPSGVSIEIP 585
Query: 3631 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV 3810
INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPK Q KV
Sbjct: 586 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKYQNKV 645
Query: 3811 DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXXFS 3990
DRFFFIPEEVHILPESSSIMVRNNSI+GI TPITLNIRSRVGGLVR FS
Sbjct: 646 DRFFFIPEEVHILPESSSIMVRNNSIVGIGTPITLNIRSRVGGLVRLEKKKKKIELKIFS 705
Query: 3991 GDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRPVI 4170
GDIHFPGEMDKISRHSAILIPPGTV NWIYVQWIATTKKKYFVLVRPVI
Sbjct: 706 GDIHFPGEMDKISRHSAILIPPGTVKKKNWKESKKTKNWIYVQWIATTKKKYFVLVRPVI 765
Query: 4171 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW 4350
LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSI+GISDTRIQLVRTCLVLNW
Sbjct: 766 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIQGISDTRIQLVRTCLVLNW 825
Query: 4351 DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR 4530
+QDKKSSSI EALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSGSGLISDNESD+
Sbjct: 826 NQDKKSSSIAEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGSGLISDNESDQ 885
Query: 4531 ININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKYHN 4710
ININPFYSIHS AKIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R FNNVKYHN
Sbjct: 886 ININPFYSIHSTAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPFNNVKYHN 945
Query: 4711 EIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXXXX 4890
IKKGINKFKKDPII I+NSLGPLGIAL I+NFYSFYRLITHNQISIT
Sbjct: 946 GIKKGINKFKKDPIISIKNSLGPLGIALQIANFYSFYRLITHNQISIT---KNLQLDKLK 1002
Query: 4891 ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICENI 5070
ETFQVIKYY MDENEKIYKPDLY+NI+LNPFHLNWYFLNHN EKTFTIISLGQFICENI
Sbjct: 1003 ETFQVIKYYFMDENEKIYKPDLYSNIILNPFHLNWYFLNHNYYEKTFTIISLGQFICENI 1062
Query: 5071 CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVTFI 5250
CIAQTKNGPHLK KSGQV+TVQ+DSVIIRSANPYLATPGATIHGHYGEIL+EGDILVTFI
Sbjct: 1063 CIAQTKNGPHLKQKSGQVITVQIDSVIIRSANPYLATPGATIHGHYGEILYEGDILVTFI 1122
Query: 5251 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 5430
YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT
Sbjct: 1123 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 1182
Query: 5431 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR 5610
IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR
Sbjct: 1183 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR 1242
Query: 5611 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 5790
AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK
Sbjct: 1243 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1302
Query: 5791 ENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFFISK 5970
ENVVLGGMIPVGTGF++IMH SRSRQHNKITLEK+ N FEVEIRNILFHHRKLFDFFISK
Sbjct: 1303 ENVVLGGMIPVGTGFQKIMHHSRSRQHNKITLEKKKNLFEVEIRNILFHHRKLFDFFISK 1362
Query: 5971 NLCDT 5985
NLCDT
Sbjct: 1363 NLCDT 1367
>YP_009161290.1 RpoC2 (chloroplast) [Wisteria floribunda] AJC10039.1 RpoC2
(chloroplast) [Wisteria floribunda]
Length = 1367
Score = 2482 bits (6434), Expect = 0.0
Identities = 1265/1385 (91%), Positives = 1286/1385 (92%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEM PNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMTPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRL T QTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLITLQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLV PTRTRHGYPAFLCNIDLYVTIESDD+IHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVQPTRTRHGYPAFLCNIDLYVTIESDDVIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR DAI FLL +DQDQ NIH S GKRNISNLLVSNDQVK KL SFNTFGTKE RIT+Y
Sbjct: 481 SCRSDAISFLLCKDQDQSNIH--SPGKRNISNLLVSNDQVKQKLWSFNTFGTKERRITDY 538
Query: 3451 SIFNQIKDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIEIP 3630
SIFNQI SDLLAKRRRNRFIIPFP QSIQERKNE M PSGVSIEIP
Sbjct: 539 SIFNQI-------------ICSDLLAKRRRNRFIIPFPFQSIQERKNERMPPSGVSIEIP 585
Query: 3631 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQIKV 3810
INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPK Q KV
Sbjct: 586 INGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKYQNKV 645
Query: 3811 DRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXXFS 3990
DRFFFIPEEVHILPESSSIMVRNNSI+GI TPITLNIRSRVGGLVR FS
Sbjct: 646 DRFFFIPEEVHILPESSSIMVRNNSIVGIGTPITLNIRSRVGGLVRLEKKKKKIELKIFS 705
Query: 3991 GDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRPVI 4170
GDIHFPGEMDKISRHSAILIPPGTV NWIYVQWIATTKKKYFVLVRPVI
Sbjct: 706 GDIHFPGEMDKISRHSAILIPPGTVKKKIWKESKKTKNWIYVQWIATTKKKYFVLVRPVI 765
Query: 4171 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVLNW 4350
LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSI+GISDTRIQLVRTCLVLNW
Sbjct: 766 LYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIQGISDTRIQLVRTCLVLNW 825
Query: 4351 DQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNESDR 4530
+QDKKSSSI EALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSGSGLISDNE+D+
Sbjct: 826 NQDKKSSSIAEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGSGLISDNETDQ 885
Query: 4531 ININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKYHN 4710
ININPFYSIHS AKIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R FNNVKYHN
Sbjct: 886 ININPFYSIHSTAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPFNNVKYHN 945
Query: 4711 EIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXXXX 4890
IKKGINKFKKDPII I+NSLGPLGIAL I+NFYSFYRLITHNQISIT
Sbjct: 946 GIKKGINKFKKDPIISIKNSLGPLGIALQIANFYSFYRLITHNQISIT---KNLQLDKLK 1002
Query: 4891 ETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICENI 5070
ETFQVIKYY MDENEKIYKPDLY+NI+LNPFHLNWYFLNHN EKTFTIISLGQFICENI
Sbjct: 1003 ETFQVIKYYFMDENEKIYKPDLYSNIILNPFHLNWYFLNHNYYEKTFTIISLGQFICENI 1062
Query: 5071 CIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVTFI 5250
CIAQTKNGPHLK KSGQV+TVQ+DSVIIRSANPYLATPGATIHGHYGEIL+EGDILVTFI
Sbjct: 1063 CIAQTKNGPHLKQKSGQVITVQIDSVIIRSANPYLATPGATIHGHYGEILYEGDILVTFI 1122
Query: 5251 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 5430
YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT
Sbjct: 1123 YEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELT 1182
Query: 5431 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR 5610
IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR
Sbjct: 1183 IAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLR 1242
Query: 5611 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 5790
AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK
Sbjct: 1243 AERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1302
Query: 5791 ENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFFISK 5970
ENVVLGGMIPVGTGF++IMH SRSRQHNKITLEK+ N FEVEIRNILFHHRKLFDFFISK
Sbjct: 1303 ENVVLGGMIPVGTGFQKIMHHSRSRQHNKITLEKKKNLFEVEIRNILFHHRKLFDFFISK 1362
Query: 5971 NLCDT 5985
NLCDT
Sbjct: 1363 NLCDT 1367
>AJE71591.1 RNA polymerase beta'' subunit (plastid) [Melilotus officinalis]
AJE71662.1 RNA polymerase beta'' subunit (plastid)
[Melilotus albus]
Length = 1376
Score = 2419 bits (6268), Expect = 0.0
Identities = 1233/1381 (89%), Positives = 1270/1381 (91%), Gaps = 4/1381 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQS ILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+PER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLV PTRTRHGYPAF+CNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVQPTRTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR D I FLLR+DQDQI+I SLS GK NISNLLVSNDQVKHKLLSF TFGTKE I+NY
Sbjct: 481 SCRSDTIHFLLRKDQDQIHIESLSNGKINISNLLVSNDQVKHKLLSFKTFGTKEKGISNY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SI NQ+ DH H MYPAIFHDT LLAKRRRNRF+IPFP SIQERKNELM PSGVSIE
Sbjct: 541 SILNQMICMDHSHLMYPAIFHDTFYLLAKRRRNRFLIPFPFHSIQERKNELMPPSGVSIE 600
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRTIGI SIFQKED IEYRGIKELKPK QI
Sbjct: 601 IPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTIGIQSIFQKEDFIEYRGIKELKPKYQI 660
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGLVR
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRLEKKKKKIELKI 720
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGEMDKISRHS+ILIPPGTV NWIYVQWIATTKKKYFVLVRP
Sbjct: 721 FSGNIHFPGEMDKISRHSSILIPPGTVKKKKWKESKKINNWIYVQWIATTKKKYFVLVRP 780
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+F KLFP+DLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 781 VILYEIPDSIHFGKLFPKDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVL 840
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQ KKSSSIEEA ASFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI+DNES
Sbjct: 841 NWDQAKKSSSIEEAPASFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLIADNES 900
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
D ININPF+SIHSKAKIQQSLSQNHGTIRMLLNRNKE +S IILSSSNCFQ R FNNVK+
Sbjct: 901 DPININPFFSIHSKAKIQQSLSQNHGTIRMLLNRNKEYRSWIILSSSNCFQMRPFNNVKF 960
Query: 4705 HNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
HN I KK+PIIPI NSLGPLGIAL ++NFYS YRLITHNQI+I
Sbjct: 961 HNGI-------KKNPIIPINNNNSLGPLGIALQVANFYSLYRLITHNQIAI---IKNLQL 1010
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
E FQVIKYYLMDENEKI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISLGQFI
Sbjct: 1011 DKLKEIFQVIKYYLMDENEKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISLGQFI 1070
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
CENICIAQ KNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL++GDIL
Sbjct: 1071 CENICIAQMKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYQGDIL 1130
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTFIYEKSRSGDITQGLPKVEQILE+RS+DSISMNLEKRIDAWNECITRILGIPWGFLIG
Sbjct: 1131 VTFIYEKSRSGDITQGLPKVEQILEIRSVDSISMNLEKRIDAWNECITRILGIPWGFLIG 1190
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1191 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1250
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1251 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1310
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDF 5958
KGLKENVVLGGMIPVGTGFKRI+HR RSRQHNKITLEK+ FEVEIRN+LFHHRKLFDF
Sbjct: 1311 KGLKENVVLGGMIPVGTGFKRIIHRLRSRQHNKITLEKK-KLFEVEIRNLLFHHRKLFDF 1369
Query: 5959 F 5961
F
Sbjct: 1370 F 1370
>YP_009242955.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus]
AMQ99218.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus mongholicus]
Length = 1376
Score = 2418 bits (6267), Expect = 0.0
Identities = 1241/1385 (89%), Positives = 1273/1385 (91%), Gaps = 4/1385 (0%)
Frame = +1
Query: 1819 MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS 1998
MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS
Sbjct: 1 MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS 60
Query: 1999 LGIDDLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2178
LGIDDLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2179 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2358
PNFRMTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMI+LPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIELPIQSNLREGLSLT 180
Query: 2359 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMP 2538
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMP 240
Query: 2539 ERLLIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSW 2718
ER+LIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINR TF+TQ IFIRTPFTCRNTSW
Sbjct: 241 ERILIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFITFKTQPIFIRTPFTCRNTSW 300
Query: 2719 ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPS 2898
ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPS
Sbjct: 301 ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPS 360
Query: 2899 NGKIKFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKS 3078
NGKIKFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKS
Sbjct: 361 NGKIKFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKS 420
Query: 3079 EQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWI 3258
EQVIAEIRAGT TFNLKE+VRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTFNLKEKVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWI 480
Query: 3259 LSGKSCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESR 3438
LSGKSCR DAI FLLR+DQDQI+ +SLST K NISNL VSND+VK+KL +FNT GTKE R
Sbjct: 481 LSGKSCRSDAIHFLLRKDQDQIHSNSLSTTKTNISNLSVSNDEVKNKLFNFNTLGTKERR 540
Query: 3439 ITNYSIFNQIK----DHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSP 3606
IT+YSIFNQI+ DHCH MYPA+FHDT LAKRRRNRF+IPF QSIQERKNELM P
Sbjct: 541 ITDYSIFNQIQILCMDHCHLMYPALFHDTFSFLAKRRRNRFLIPF--QSIQERKNELMRP 598
Query: 3607 SGVSIEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKEL 3786
SGVSIEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGI SIFQKEDLIEYRGIKEL
Sbjct: 599 SGVSIEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIQSIFQKEDLIEYRGIKEL 658
Query: 3787 KPKCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXX 3966
KPK QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSRV GLVR
Sbjct: 659 KPKYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSRVRGLVRLEKKKK 718
Query: 3967 XXXXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKY 4146
FSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKY
Sbjct: 719 KIELKIFSGNIHFPGEMDKISRPSAILIPPRTV-KKKRKESKKLNNWTYVQWITTTKKKY 777
Query: 4147 FVLVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLV 4326
FVLVRPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLV
Sbjct: 778 FVLVRPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLV 837
Query: 4327 RTCLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGL 4506
RTCLVLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GL
Sbjct: 838 RTCLVLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGL 897
Query: 4507 ISDNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRS 4686
ISD SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R
Sbjct: 898 ISD--SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRP 955
Query: 4687 FNNVKYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXX 4866
FNNVK N I KKDPII I+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 956 FNNVKDPNGI-------KKDPIIAIKNSLGPLGIALQIANFYSFSRLITHNQISIT---K 1005
Query: 4867 XXXXXXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISL 5046
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKTFTIISL
Sbjct: 1006 NLQLDKLKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTFTIISL 1065
Query: 5047 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 5226
GQFICENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+E
Sbjct: 1066 GQFICENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYE 1125
Query: 5227 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 5406
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1126 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1185
Query: 5407 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 5586
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1186 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1245
Query: 5587 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 5766
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1246 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1305
Query: 5767 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRK 5946
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEK+ N FEVEIRN+LFHHRK
Sbjct: 1306 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRK 1365
Query: 5947 LFDFF 5961
LFDFF
Sbjct: 1366 LFDFF 1370
>YP_009175761.1 RNA polymerase beta'' subunit (chloroplast) [Astragalus mongholicus
var. nakaianus] ALH42736.1 RNA polymerase beta'' subunit
(chloroplast) [Astragalus mongholicus var. nakaianus]
ANK78900.1 RNA polymerase beta'' subunit (chloroplast)
[Astragalus membranaceus var. membranaceus]
Length = 1372
Score = 2411 bits (6249), Expect = 0.0
Identities = 1237/1381 (89%), Positives = 1269/1381 (91%), Gaps = 4/1381 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMI+LPIQSNLREGLSLTEYII
Sbjct: 121 MTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIELPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINR TF+TQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFITFKTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGT TFNLKE+VRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTSTFNLKEKVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR DAI FLLR+DQDQI+ +SLST K NISNL VSND+VK+KL +FNT GTKE RIT+Y
Sbjct: 481 SCRSDAIHFLLRKDQDQIHSNSLSTTKTNISNLSVSNDEVKNKLFNFNTLGTKERRITDY 540
Query: 3451 SIFNQIK----DHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVS 3618
SIFNQI+ DHCH MYPA+FHDT LAKRRRNRF+IPF QSIQERKNELM PSGVS
Sbjct: 541 SIFNQIQILCMDHCHLMYPALFHDTFSFLAKRRRNRFLIPF--QSIQERKNELMRPSGVS 598
Query: 3619 IEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKC 3798
IEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGI SIFQKEDLIEYRGIKELKPK
Sbjct: 599 IEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIQSIFQKEDLIEYRGIKELKPKY 658
Query: 3799 QIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXX 3978
QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSRV GLVR
Sbjct: 659 QIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSRVRGLVRLEKKKKKIEL 718
Query: 3979 XXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLV 4158
FSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYFVLV
Sbjct: 719 KIFSGNIHFPGEMDKISRPSAILIPPRTV-KKKRKESKKLNNWTYVQWITTTKKKYFVLV 777
Query: 4159 RPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCL 4338
RPVILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVRTCL
Sbjct: 778 RPVILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVRTCL 837
Query: 4339 VLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDN 4518
VLNW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GLISD
Sbjct: 838 VLNWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGLISD- 896
Query: 4519 ESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNV 4698
SDRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ R FNNV
Sbjct: 897 -SDRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMRPFNNV 955
Query: 4699 KYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
K N I KKDPII I+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 956 KDPNGI-------KKDPIIAIKNSLGPLGIALQIANFYSFSRLITHNQISIT---KNLQL 1005
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKTFTIISLGQFI
Sbjct: 1006 DKLKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTFTIISLGQFI 1065
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
CENICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+EGDIL
Sbjct: 1066 CENICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYEGDIL 1125
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIG
Sbjct: 1126 VTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 1185
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1186 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1245
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1246 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1305
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDF 5958
KGLKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEK+ N FEVEIRN+LFHHRKLFDF
Sbjct: 1306 KGLKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRKLFDF 1365
Query: 5959 F 5961
F
Sbjct: 1366 F 1366
>AJE71733.1 RNA polymerase beta'' subunit (plastid) [Astragalus canadensis]
Length = 1372
Score = 2407 bits (6237), Expect = 0.0
Identities = 1232/1379 (89%), Positives = 1267/1379 (91%), Gaps = 2/1379 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMI+LPIQSNLREGLSLTEYII
Sbjct: 121 MTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIELPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINR TF+TQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFITFKTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGT TFNLKE+VRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTSTFNLKEKVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR DAI FLLR+DQDQI+ +SLST K NISNL VSND+VK+KL +FNTFGTKE RITNY
Sbjct: 481 SCRSDAIHFLLRKDQDQIHSNSLSTTKTNISNLSVSNDEVKNKLFNFNTFGTKERRITNY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SIFNQI DH H MYPAIFHDT LAKRRRNRF+IPFP QSIQERKNEL PSGVSIE
Sbjct: 541 SIFNQILCMDHRHLMYPAIFHDTFSFLAKRRRNRFLIPFPFQSIQERKNELTPPSGVSIE 600
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGI SIFQKEDLIEYRGIKELKPK QI
Sbjct: 601 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIQSIFQKEDLIEYRGIKELKPKYQI 660
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSRV GLVR
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSRVRGLVRLEKKKKKMELKI 720
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYFVLVRP
Sbjct: 721 FSGNIHFPGEMDKISRPSAILIPPRTV-KKKRKESKKLNNWTYVQWITTTKKKYFVLVRP 779
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 780 VILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVRTCLVL 839
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NW QDK+SSSIEEALASFVEVSTNGLIEYFLRI LVKSHTSYIRKR DPSG GLISD S
Sbjct: 840 NWAQDKRSSSIEEALASFVEVSTNGLIEYFLRIYLVKSHTSYIRKRNDPSGLGLISD--S 897
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ + FNNVK
Sbjct: 898 DRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMKPFNNVKD 957
Query: 4705 HNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXX 4884
N I KKDPII I+NSLGP+GIAL I+NFYSF RLITHNQISIT
Sbjct: 958 PNVI-------KKDPIIAIKNSLGPVGIALQIANFYSFSRLITHNQISIT---KNLQLDK 1007
Query: 4885 XXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICE 5064
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL++N CEKT TIISLGQFICE
Sbjct: 1008 LKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHNNFCEKTLTIISLGQFICE 1067
Query: 5065 NICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVT 5244
NICIAQTKNGPHLKLKSGQVLTVQ DS+IIRSA PYLATPGATIHGHYGEIL+EGDILVT
Sbjct: 1068 NICIAQTKNGPHLKLKSGQVLTVQKDSLIIRSAKPYLATPGATIHGHYGEILYEGDILVT 1127
Query: 5245 FIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 5424
FIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNEC+TRILGIPWGFLIGAE
Sbjct: 1128 FIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECVTRILGIPWGFLIGAE 1187
Query: 5425 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 5604
LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL
Sbjct: 1188 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 1247
Query: 5605 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 5784
LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1248 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1307
Query: 5785 LKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFF 5961
LKENVVLGGMIPVGTGFKRIMHRSRS Q NKI+LEK+ N FEVEIRN+LFHHRKLFDFF
Sbjct: 1308 LKENVVLGGMIPVGTGFKRIMHRSRSGQQNKISLEKKKNLFEVEIRNLLFHHRKLFDFF 1366
>AJE72230.1 RNA polymerase beta'' subunit (plastid) [Oxytropis lambertii]
Length = 1368
Score = 2406 bits (6236), Expect = 0.0
Identities = 1234/1379 (89%), Positives = 1265/1379 (91%), Gaps = 2/1379 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMI+LPIQSNLREGLSLTEYII
Sbjct: 121 MTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIELPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLV+PTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVNPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGT TFNLKE+VRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLW+LSGK
Sbjct: 421 AEIRAGTSTFNLKEKVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWVLSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR DAI FLLR+DQDQI+IHSLST K NISNL VSNDQVK+KLL+FNTFGTKE +IT+Y
Sbjct: 481 SCRSDAIHFLLRKDQDQIHIHSLSTTKTNISNLSVSNDQVKNKLLNFNTFGTKERKITDY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SIFNQI DHCH MYPAIFHDT LAKRRRNRF+IPF QSIQERKNEL PSGVSIE
Sbjct: 541 SIFNQILCMDHCHLMYPAIFHDTFSFLAKRRRNRFLIPF--QSIQERKNELTPPSGVSIE 598
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFA FDDPQYRRQSSGITKYRTIGI SIFQKEDLIEYRGIKELKPK QI
Sbjct: 599 IPINGIFHRNSIFASFDDPQYRRQSSGITKYRTIGIQSIFQKEDLIEYRGIKELKPKYQI 658
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSRVGGLVR
Sbjct: 659 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSRVGGLVRLEKKKKKMELKI 718
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGEMDKISR SAILIPP TV NW YVQWI TTKKKYFVLVRP
Sbjct: 719 FSGNIHFPGEMDKISRPSAILIPPRTVKKKKWKESKKLNNWTYVQWITTTKKKYFVLVRP 778
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 779 VILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVRTCLVL 838
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NW QDK+SSSI+EALASFVEVST GLIEYFLRIDLVKSHTSYIRKR DPSG GLI S
Sbjct: 839 NWAQDKRSSSIDEALASFVEVSTKGLIEYFLRIDLVKSHTSYIRKRNDPSGLGLI----S 894
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRIN NPF SIHSK KIQQS SQNHGTIRMLLNRNK +SLIILSSSNCFQ R FNNVK
Sbjct: 895 DRINRNPFLSIHSKTKIQQSFSQNHGTIRMLLNRNKG-RSLIILSSSNCFQMRPFNNVKD 953
Query: 4705 HNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXX 4884
N I KKDPIIPI+NSLGPLGIAL I+NFYSF RLITHNQISIT
Sbjct: 954 PNGI-------KKDPIIPIKNSLGPLGIALQIANFYSFSRLITHNQISIT---KNLQLDK 1003
Query: 4885 XXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICE 5064
ETFQVIKYYLMDENEKI+KPDLY+NIVLNPFHLNWYFL+HN CEKT TIISLGQF+CE
Sbjct: 1004 LKETFQVIKYYLMDENEKIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTLTIISLGQFLCE 1063
Query: 5065 NICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVT 5244
NICIAQTKNGPHLKLKSGQVLTVQ DSVIIRSANPYLATPGATIHGHYGEIL+EGDILVT
Sbjct: 1064 NICIAQTKNGPHLKLKSGQVLTVQKDSVIIRSANPYLATPGATIHGHYGEILYEGDILVT 1123
Query: 5245 FIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 5424
FIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE
Sbjct: 1124 FIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 1183
Query: 5425 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 5604
LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL
Sbjct: 1184 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 1243
Query: 5605 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 5784
LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1244 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1303
Query: 5785 LKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFF 5961
LKENVVLGGMIPVGTGFKRI HRSRS Q NKITLEK+ N FEVEIRN+LFHHRKLFDFF
Sbjct: 1304 LKENVVLGGMIPVGTGFKRITHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRKLFDFF 1362
>YP_009327946.1 RNA polymerase beta'' subunit (chloroplast) [Medicago falcata]
AOG66214.1 RNA polymerase beta'' subunit (chloroplast)
[Medicago sativa] APC60490.1 RNA polymerase beta''
subunit (chloroplast) [Medicago falcata]
Length = 1374
Score = 2402 bits (6225), Expect = 0.0
Identities = 1228/1385 (88%), Positives = 1271/1385 (91%), Gaps = 4/1385 (0%)
Frame = +1
Query: 1819 MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS 1998
MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS
Sbjct: 1 MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS 60
Query: 1999 LGIDDLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2178
LGIDDLLTIPSKGWLVQDAEQQS ILEKHN YGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSSILEKHNQYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2179 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2358
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2359 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMP 2538
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIP 240
Query: 2539 ERLLIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSW 2718
ER+LIQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSW
Sbjct: 241 ERILIQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSW 300
Query: 2719 ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPS 2898
ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPS
Sbjct: 301 ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPS 360
Query: 2899 NGKIKFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKS 3078
NGKIKFNEDLVHPTRTRHGYPAF+CNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKS
Sbjct: 361 NGKIKFNEDLVHPTRTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKS 420
Query: 3079 EQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWI 3258
EQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEF+YSNVHILPKTSHLWI
Sbjct: 421 EQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWI 480
Query: 3259 LSGKSCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESR 3438
LSGKSCR D I FLLR+DQDQINI SLSTGKRNISNLLVSND+VK KLLS TFGTKE
Sbjct: 481 LSGKSCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKRKLLSLKTFGTKEKG 540
Query: 3439 ITNYSIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSG 3612
I+NYSIFNQI DH H M PAIFHDT LLAKRRRNRF+IPF QSIQERKNELM PSG
Sbjct: 541 ISNYSIFNQIICTDHSHLMDPAIFHDTFYLLAKRRRNRFLIPF--QSIQERKNELMRPSG 598
Query: 3613 VSIEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKP 3792
VSIEIPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRTIGIHS+FQKED IEYRGIKELKP
Sbjct: 599 VSIEIPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTIGIHSVFQKEDFIEYRGIKELKP 658
Query: 3793 KCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXX 3972
K QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGLVR
Sbjct: 659 KYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRLEKKKKKI 718
Query: 3973 XXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFV 4152
FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWI T+KKKYFV
Sbjct: 719 ELKIFSGNIHFPGERDKISRHSSILIPPGTV-KKKWKESKKINNWIYVQWITTSKKKYFV 777
Query: 4153 LVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRT 4332
LVRPVILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRT
Sbjct: 778 LVRPVILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRT 837
Query: 4333 CLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLIS 4512
CLVLNWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI+
Sbjct: 838 CLVLNWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLIA 897
Query: 4513 DNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFN 4692
DNESDRININPF+SIHSKAK+++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R FN
Sbjct: 898 DNESDRININPFFSIHSKAKMKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPFN 957
Query: 4693 NVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXX 4866
NVKYHN I KK+P IPI NSLGPLGIA + NF S YRLITHNQISI
Sbjct: 958 NVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFDSLYRLITHNQISI---MK 1007
Query: 4867 XXXXXXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISL 5046
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISL
Sbjct: 1008 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYDCEKTFTIISL 1067
Query: 5047 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 5226
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATPGATIHGHYGEIL++
Sbjct: 1068 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPGATIHGHYGEILYQ 1127
Query: 5227 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 5406
GDILVTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1128 GDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1187
Query: 5407 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 5586
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1188 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1247
Query: 5587 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 5766
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1248 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1307
Query: 5767 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRK 5946
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRS Q+NKITL+K+ FEVEIRN+LFHHRK
Sbjct: 1308 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSTQYNKITLKKK-KLFEVEIRNLLFHHRK 1366
Query: 5947 LFDFF 5961
LFD F
Sbjct: 1367 LFDSF 1371
>YP_009141612.1 RNA polymerase beta' subunit (chloroplast) [Medicago hybrida]
YP_009141687.1 RNA polymerase beta' subunit (chloroplast)
[Medicago papillosa] AIL56137.1 RNA polymerase beta'
subunit (chloroplast) [Medicago hybrida] AIL56212.1 RNA
polymerase beta' subunit (chloroplast) [Medicago
papillosa] AMC32363.1 RNA polymerase beta'' subunit
(chloroplast) [Medicago sativa] ANS57907.1 RNA polymerase
beta' subunit (chloroplast) [Medicago sativa]
Length = 1370
Score = 2399 bits (6217), Expect = 0.0
Identities = 1226/1381 (88%), Positives = 1267/1381 (91%), Gaps = 4/1381 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQS ILEKHN YGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSSILEKHNQYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+PER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAF+CNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEF+YSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR D I FLLR+DQDQINI SLSTGKRNISNLLVSND+VK KLLS TFGTKE I+NY
Sbjct: 481 SCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKRKLLSLKTFGTKEKGISNY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SIFNQI DH H M PAIFHDT LLAKRRRNRF+IPF QSIQE KNELM PSGVSIE
Sbjct: 541 SIFNQIICTDHSHLMDPAIFHDTFYLLAKRRRNRFLIPF--QSIQEGKNELMRPSGVSIE 598
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRTIGIHS+FQKED IEYRGIKELKPK QI
Sbjct: 599 IPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTIGIHSVFQKEDFIEYRGIKELKPKYQI 658
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGLVR
Sbjct: 659 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRLEKKKKKIELKI 718
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWI TTKKKYFVLVRP
Sbjct: 719 FSGNIHFPGERDKISRHSSILIPPGTV-KKKWKESKKIHNWIYVQWITTTKKKYFVLVRP 777
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 778 VILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVL 837
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQ KKS+SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI+DNES
Sbjct: 838 NWDQGKKSTSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLIADNES 897
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF+SIHSKAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R FNNVKY
Sbjct: 898 DRININPFFSIHSKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPFNNVKY 957
Query: 4705 HNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
HN I KK+P IPI NSLGPLGIA + NFYS YRLITHNQISI
Sbjct: 958 HNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYRLITHNQISI---MKNFQL 1007
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISLGQFI
Sbjct: 1008 DKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYDCEKTFTIISLGQFI 1067
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
CENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATPGATIHGHYGEIL++GDIL
Sbjct: 1068 CENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPGATIHGHYGEILYQGDIL 1127
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTFIYEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIG
Sbjct: 1128 VTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 1187
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1188 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1247
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1248 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1307
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDF 5958
KGLKENVVLGGMIPVGTGFKRIMHRSRS Q+NKITL+K+ FEVEIRN+LFHHRKLFD
Sbjct: 1308 KGLKENVVLGGMIPVGTGFKRIMHRSRSTQYNKITLKKK-KLFEVEIRNLLFHHRKLFDS 1366
Query: 5959 F 5961
F
Sbjct: 1367 F 1367
>AJE72727.1 RNA polymerase beta'' subunit (plastid) [Astragalus crassicarpus]
Length = 1374
Score = 2394 bits (6205), Expect = 0.0
Identities = 1225/1379 (88%), Positives = 1261/1379 (91%), Gaps = 2/1379 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGF QATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQS ILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMI+LPIQSNLREGLSLTEYII
Sbjct: 121 MTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIELPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINR TF+TQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFITFKTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLV+PTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVYPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGT T NLKE+VRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTSTLNLKEKVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR DAI FLLR+DQDQI +SLST K NISN VSND+VK+KL +FNTFGTKE RIT+Y
Sbjct: 481 SCRSDAIHFLLRKDQDQIQSNSLSTTKTNISNRSVSNDEVKNKLFNFNTFGTKERRITDY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SIFNQI DH H MYPAIFHDT LAKRRRNRF+IPFP QSIQERKNEL PSGVSIE
Sbjct: 541 SIFNQILCMDHRHLMYPAIFHDTFSFLAKRRRNRFLIPFPFQSIQERKNELTPPSGVSIE 600
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGI SIFQKEDLIEYRGI+ELKPK QI
Sbjct: 601 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIQSIFQKEDLIEYRGIQELKPKYQI 660
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPITLNIRSRV GLVR
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITLNIRSRVRGLVRLEKKKKKMELKI 720
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+I+FPGEMDKISR SAILIPP TV NW YVQWI TTKKKYFVLVRP
Sbjct: 721 FSGNIYFPGEMDKISRPSAILIPPRTV-KKKGKESKKLNNWTYVQWITTTKKKYFVLVRP 779
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSINFVKLFPQDLFQE+DNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 780 VILYEIPDSINFVKLFPQDLFQEKDNLELKVINYILYGNGKSIRGISDTRIQLVRTCLVL 839
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NW QDK+SSSIEEA ASFVEVSTNGLIEYFLRIDLVKSHTSYIRKR DPSG GLISD S
Sbjct: 840 NWAQDKRSSSIEEAFASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRNDPSGLGLISD--S 897
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF SI+SK KIQQSLSQNHGTIRMLLNRNKEC+SLIILSSSNCFQ + FNNVK
Sbjct: 898 DRININPFLSINSKTKIQQSLSQNHGTIRMLLNRNKECRSLIILSSSNCFQMKPFNNVKD 957
Query: 4705 HNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXX 4884
N I K KKDPII I+NSLGP+GIAL I+NFYSF RLITHNQIS T
Sbjct: 958 PNGI-----KIKKDPIIAIKNSLGPVGIALQIANFYSFSRLITHNQISRT---KNLQLDK 1009
Query: 4885 XXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICE 5064
ETFQVIKYYLMDENE I+KPDLY+NIVLNPFHLNWYFL+HN CEKT TIISLGQFICE
Sbjct: 1010 LKETFQVIKYYLMDENETIFKPDLYSNIVLNPFHLNWYFLHHNFCEKTLTIISLGQFICE 1069
Query: 5065 NICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVT 5244
NICIAQTKNGPH KLKSGQVLTVQ DSVIIRSA PYLATPGATIHGHYGEIL+EGDILVT
Sbjct: 1070 NICIAQTKNGPHFKLKSGQVLTVQKDSVIIRSAKPYLATPGATIHGHYGEILYEGDILVT 1129
Query: 5245 FIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 5424
FIYEKSRSGDITQGLPKVE+ILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE
Sbjct: 1130 FIYEKSRSGDITQGLPKVEKILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 1189
Query: 5425 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 5604
LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL
Sbjct: 1190 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 1249
Query: 5605 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 5784
LRAERTGRALEEA+CYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1250 LRAERTGRALEEAVCYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1309
Query: 5785 LKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDFF 5961
LKENVVLGGMIPVGTGFKRIMHRSRS Q NKITLEK+ N FEVEIRN+LFHHRKLFDFF
Sbjct: 1310 LKENVVLGGMIPVGTGFKRIMHRSRSGQQNKITLEKKKNLFEVEIRNLLFHHRKLFDFF 1368
>YP_001381726.2 RNA polymerase beta' subunit [Medicago truncatula]
Length = 1374
Score = 2392 bits (6199), Expect = 0.0
Identities = 1221/1385 (88%), Positives = 1266/1385 (91%), Gaps = 4/1385 (0%)
Frame = +1
Query: 1819 MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS 1998
MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS
Sbjct: 1 MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS 60
Query: 1999 LGIDDLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2178
LGIDDLLTIPSKGWLVQDAEQQS ILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2179 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2358
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2359 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMP 2538
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIP 240
Query: 2539 ERLLIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSW 2718
ER+LIQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSW
Sbjct: 241 ERILIQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSW 300
Query: 2719 ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPS 2898
ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEY RAPS
Sbjct: 301 ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYARAPS 360
Query: 2899 NGKIKFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKS 3078
NGKIKFNEDLVHPTRTRHGYPAF+CNIDLYVT+ESDDIIHNVIIPPKSFLLVQNDQYVKS
Sbjct: 361 NGKIKFNEDLVHPTRTRHGYPAFICNIDLYVTVESDDIIHNVIIPPKSFLLVQNDQYVKS 420
Query: 3079 EQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWI 3258
EQVIAEIRAGT TFNLKERVRKHIYSDSEGEMHWSTDVYHASEF+YSNVHILPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWI 480
Query: 3259 LSGKSCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESR 3438
LSGKSCR D I FLLR+DQDQINI SLSTGKRNISNLLVSND+VK KLLS TFGTKE
Sbjct: 481 LSGKSCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKLKLLSLKTFGTKEKG 540
Query: 3439 ITNYSIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSG 3612
I+NYSI NQ+ DH H MYPAIFHDT LLAKRRRNRF+IPF QSIQERKNELM P G
Sbjct: 541 ISNYSILNQMICTDHSHLMYPAIFHDTFYLLAKRRRNRFLIPF--QSIQERKNELMRPFG 598
Query: 3613 VSIEIPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKP 3792
VSIEIPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRT+GIHS+FQKED IEYRGIKELKP
Sbjct: 599 VSIEIPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTVGIHSVFQKEDFIEYRGIKELKP 658
Query: 3793 KCQIKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXX 3972
K QIKVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGLVR
Sbjct: 659 KYQIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRLEKKKKKI 718
Query: 3973 XXXXFSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFV 4152
FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYFV
Sbjct: 719 ELKLFSGNIHFPGERDKISRHSSILIPPGTV-KKKRKESKKINNWIYVQWIATTKKKYFV 777
Query: 4153 LVRPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRT 4332
LVRPVILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRT
Sbjct: 778 LVRPVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRT 837
Query: 4333 CLVLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLIS 4512
CLVLNWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI+
Sbjct: 838 CLVLNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLIA 897
Query: 4513 DNESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFN 4692
DNESDRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R FN
Sbjct: 898 DNESDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPFN 957
Query: 4693 NVKYHNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXX 4866
NVKYHN I KK+P IPI NSLGPLGIA + NFYS Y LITHNQISI
Sbjct: 958 NVKYHNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISI---MK 1007
Query: 4867 XXXXXXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISL 5046
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISL
Sbjct: 1008 NFQLDKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISL 1067
Query: 5047 GQFICENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFE 5226
GQFICENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++
Sbjct: 1068 GQFICENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQ 1127
Query: 5227 GDILVTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWG 5406
GDILVTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWG
Sbjct: 1128 GDILVTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWG 1187
Query: 5407 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 5586
FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP
Sbjct: 1188 FLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 1247
Query: 5587 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 5766
GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1248 GELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1307
Query: 5767 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRK 5946
IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+K+ FEVEIRN+LFHHR
Sbjct: 1308 IDWLKGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRN 1366
Query: 5947 LFDFF 5961
LFD F
Sbjct: 1367 LFDSF 1371
>AGV52603.1 RNA polymerase beta'' subunit (chloroplast) [Medicago truncatula f.
tricycla]
Length = 1370
Score = 2387 bits (6187), Expect = 0.0
Identities = 1220/1381 (88%), Positives = 1263/1381 (91%), Gaps = 4/1381 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQS ILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+PER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEY RAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYARAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAF+CNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGT TFN KERVRKHIYSDSEGEMHWSTDVYHASEF+YSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR D I FLLR+DQDQINI SLSTGKRNISNLLVSND+VK KLLS TFGTKE I+NY
Sbjct: 481 SCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKLKLLSLKTFGTKEKGISNY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SI NQ+ DH H MYPAIFHDT LLAKRRRNRF+IPF QSIQERKNELM PSGVSIE
Sbjct: 541 SILNQMICTDHSHLMYPAIFHDTFYLLAKRRRNRFLIPF--QSIQERKNELMRPSGVSIE 598
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRTIGIHS+FQKED IEYRGIKELKPK QI
Sbjct: 599 IPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTIGIHSVFQKEDFIEYRGIKELKPKYQI 658
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGLVR
Sbjct: 659 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRLEKKKKKIELKL 718
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYFVLVRP
Sbjct: 719 FSGNIHFPGERDKISRHSSILIPPGTV-KKKRKESKKINNWIYVQWIATTKKKYFVLVRP 777
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+F KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 778 VILYEIPDSIDFRKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVL 837
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI+DNES
Sbjct: 838 NWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLIADNES 897
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R FNNVKY
Sbjct: 898 DRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPFNNVKY 957
Query: 4705 HNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
HN I KK+P IPI NSLGPLGIA + NFYS YRLITHNQISI
Sbjct: 958 HNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYRLITHNQISI---MKNFQL 1007
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISLGQFI
Sbjct: 1008 DKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISLGQFI 1067
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
CENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++GDIL
Sbjct: 1068 CENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQGDIL 1127
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTFIYEKSRSGDITQGLPKVE+ILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIG
Sbjct: 1128 VTFIYEKSRSGDITQGLPKVERILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 1187
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1188 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1247
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1248 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1307
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDF 5958
KGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+K+ FEVEIRN+LFHHR LFD
Sbjct: 1308 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKE-KLFEVEIRNLLFHHRNLFDS 1366
Query: 5959 F 5961
F
Sbjct: 1367 F 1367
>AFR60125.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
Length = 1370
Score = 2385 bits (6181), Expect = 0.0
Identities = 1217/1381 (88%), Positives = 1262/1381 (91%), Gaps = 4/1381 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQS ILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+PER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEY RAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYARAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAF+CNIDLYVT+ESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFICNIDLYVTVESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGT TFNLKERVRKHIYSDSEGEMHWSTDVYHASEF+YSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTSTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR D I FLLR+DQDQINI SLSTGKRNISNLLVSND+VK KLLS TFGTKE I+NY
Sbjct: 481 SCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKLKLLSLKTFGTKEKGISNY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SI NQ+ DH H MYPAIFHDT LLAKRRRNRF+IPF QSIQERKNELM P GVSIE
Sbjct: 541 SILNQMICTDHSHLMYPAIFHDTFYLLAKRRRNRFLIPF--QSIQERKNELMRPFGVSIE 598
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRT+GIHS+FQKED IEYRGIKELKPK QI
Sbjct: 599 IPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTVGIHSVFQKEDFIEYRGIKELKPKYQI 658
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGLVR
Sbjct: 659 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRFEKKKKKIELKL 718
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYFVLVRP
Sbjct: 719 FSGNIHFPGERDKISRHSSILIPPGTV-KKKRKESKKINNWIYVQWIATTKKKYFVLVRP 777
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 778 VILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVL 837
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI+DNES
Sbjct: 838 NWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLIADNES 897
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R FNNVKY
Sbjct: 898 DRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPFNNVKY 957
Query: 4705 HNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
HN I KK+P IPI NSLGPLGIA + NFYS Y LITHNQISI
Sbjct: 958 HNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISI---MKNFQL 1007
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISLGQFI
Sbjct: 1008 DKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISLGQFI 1067
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
CENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++GDIL
Sbjct: 1068 CENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQGDIL 1127
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIG
Sbjct: 1128 VTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 1187
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1188 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1247
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1248 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1307
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDF 5958
KGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+K+ FEVEIRN+LFHHR LFD
Sbjct: 1308 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRNLFDS 1366
Query: 5959 F 5961
F
Sbjct: 1367 F 1367
>AFR59973.1 RNA polymerase beta'' subunit (plastid) [Medicago truncatula]
AFR60049.1 RNA polymerase beta'' subunit (plastid)
[Medicago truncatula]
Length = 1370
Score = 2385 bits (6181), Expect = 0.0
Identities = 1217/1381 (88%), Positives = 1262/1381 (91%), Gaps = 4/1381 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQS ILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+PER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEY RAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYARAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAF+CNIDLYVT+ESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFICNIDLYVTVESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGT TFNLKERVRKHIYSDSEGEMHWSTDVYHASEF+YSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTSTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR D I FLLR+DQDQINI SLSTGKRNISNLLVSND+VK KLLS TFGTKE I+NY
Sbjct: 481 SCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKLKLLSLKTFGTKEKGISNY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SI NQ+ DH H MYPAIFHDT LLAKRRRNRF+IPF QSIQERKNELM P GVSIE
Sbjct: 541 SILNQMICTDHSHLMYPAIFHDTFYLLAKRRRNRFLIPF--QSIQERKNELMRPFGVSIE 598
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRT+GIHS+FQKED IEYRGIKELKPK QI
Sbjct: 599 IPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTVGIHSVFQKEDFIEYRGIKELKPKYQI 658
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGLVR
Sbjct: 659 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRLEKKKKKIELKL 718
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGE DKISRHS+ILIPPGTV NWIYVQWIATTKKKYFVLVRP
Sbjct: 719 FSGNIHFPGERDKISRHSSILIPPGTV-KKKRKESKKINNWIYVQWIATTKKKYFVLVRP 777
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+F+KLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 778 VILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVL 837
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+T+YIRKR DPSG GLI+DNES
Sbjct: 838 NWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLIADNES 897
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF+SIH KAKI++SLSQNHGTIRMLLNRNKEC+S IILSSSNCFQ R FNNVKY
Sbjct: 898 DRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPFNNVKY 957
Query: 4705 HNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
HN I KK+P IPI NSLGPLGIA + NFYS Y LITHNQISI
Sbjct: 958 HNGI-------KKNPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISI---MKNFQL 1007
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISLGQFI
Sbjct: 1008 DKITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISLGQFI 1067
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
CENICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYLATP ATIHGHYGEIL++GDIL
Sbjct: 1068 CENICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQGDIL 1127
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTFIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIG
Sbjct: 1128 VTFIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 1187
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1188 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1247
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1248 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1307
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFDF 5958
KGLKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+K+ FEVEIRN+LFHHR LFD
Sbjct: 1308 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRNLFDS 1366
Query: 5959 F 5961
F
Sbjct: 1367 F 1367
>AIJ28040.1 RNA polymerase beta' subunit (chloroplast) [Trifolium lupinaster]
Length = 1367
Score = 2380 bits (6169), Expect = 0.0
Identities = 1217/1379 (88%), Positives = 1255/1379 (91%), Gaps = 4/1379 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWL QDAEQQS ILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLAQDAEQQSSILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINR TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGKI
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHGYPAF+CNIDLYVTIES DIIHNVIIPPKSFLLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPTRTRHGYPAFICNIDLYVTIESHDIIHNVIIPPKSFLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKER+RKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERIRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR D I FLLR+DQDQI+I SLS GKRN S L VS+D VKHK SF TFGTKE I++Y
Sbjct: 481 SCRSDTIHFLLRKDQDQIHIDSLSNGKRNTSTLFVSDDHVKHKFFSFKTFGTKEKGISDY 540
Query: 3451 SIFNQ--IKDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
S+FNQ DH H MYPAIFHD +LLAKRRRNRF+IPFP QSIQERKNELM PSGVSIE
Sbjct: 541 SLFNQTICTDHSHLMYPAIFHDIFNLLAKRRRNRFLIPFPFQSIQERKNELMPPSGVSIE 600
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSI QKED IEYRGIKELKPK QI
Sbjct: 601 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSILQKEDFIEYRGIKELKPKYQI 660
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT NIRSRVGGL+R
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLLRLEKKKKKIELKI 720
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGE+DKISRHSAILIPPGTV NWIYVQWIATTKKKYFVLVRP
Sbjct: 721 FSGNIHFPGEVDKISRHSAILIPPGTV-KKKRKESKKINNWIYVQWIATTKKKYFVLVRP 779
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 780 VILYEIPDSIHFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVL 839
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQ KKSSSIEEA ASFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI+DNE
Sbjct: 840 NWDQVKKSSSIEEAPASFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLIADNEL 899
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
D ININPF+SIHSKAKIQQS+SQNHGTIRMLLNRNKE +S IILSSSNCFQ RSFNNVKY
Sbjct: 900 DGININPFFSIHSKAKIQQSISQNHGTIRMLLNRNKESRSWIILSSSNCFQMRSFNNVKY 959
Query: 4705 HNEIKKGINKFKKDPIIPI--QNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
HN I KKDP IPI +NSLGPLGIAL ++NF S YR T+NQISI
Sbjct: 960 HNGI-------KKDPRIPINNKNSLGPLGIALQVANFDSLYRFKTYNQISI---IKNLQL 1009
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
E FQVIKYYLMDENEKI+KPDLY+NIVLNPFHLNWYFL+H EKTFTIISLGQFI
Sbjct: 1010 DKLTEIFQVIKYYLMDENEKIFKPDLYSNIVLNPFHLNWYFLHHYYSEKTFTIISLGQFI 1069
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
ENICIAQ KNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEIL++GDIL
Sbjct: 1070 SENICIAQMKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYQGDIL 1129
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTF+YEKSRSGDITQGLPKVEQILE+RSIDSISMNLEKRID WNECITRILGIPWGFLIG
Sbjct: 1130 VTFLYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDVWNECITRILGIPWGFLIG 1189
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1190 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1249
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1250 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1309
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFD 5955
KGLKENVVLGGMIPVGTGFKRI RSRSRQH KITLEK+ FEVEIRN+LFHHRKL D
Sbjct: 1310 KGLKENVVLGGMIPVGTGFKRITDRSRSRQHKKITLEKK-KLFEVEIRNLLFHHRKLLD 1367
>AHY33059.1 RNA polymerase beta' subunit (chloroplast) [Indigofera tinctoria]
Length = 1376
Score = 2365 bits (6128), Expect = 0.0
Identities = 1205/1381 (87%), Positives = 1254/1381 (90%), Gaps = 5/1381 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
MAERANLVFHN VIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSKGWLVQDAEQQS ILEK++HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKNHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISV T+NGMMPER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVKTRNGMMPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRVLADDIYIGSRCI VRNQDIGIGLINR TFQTQ I IRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIAVRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSP HGDLVELGEAVGIIAGQSIGEPGTQLTLR AE+VRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHPTRTRHG+PAFLC IDLYVTIESDDIIHNV IPPKSFLLVQNDQYV+SEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESDDIIHNVTIPPKSFLLVQNDQYVESEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYT NLKE+VRKHIYSDSEGEMHWSTDVYHASEF YSNVHILPKTSHLWILSG+
Sbjct: 421 AEIRAGTYTLNLKEKVRKHIYSDSEGEMHWSTDVYHASEFTYSNVHILPKTSHLWILSGR 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR A+ F LR+DQDQ+NIHSLSTG+RNISN LVSNDQV+HK SFN G KE RI +Y
Sbjct: 481 SCRSGAVSFSLRKDQDQMNIHSLSTGERNISNPLVSNDQVRHKFFSFNPSGKKERRIPDY 540
Query: 3451 SIFNQI--KDHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
S+FNQI DHCHF++PAIFHDTSDLLAKRRRNRFIIPFP QSIQER ELM PSG+SIE
Sbjct: 541 SVFNQILCMDHCHFIHPAIFHDTSDLLAKRRRNRFIIPFPFQSIQERDKELMFPSGISIE 600
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKED-LIEYRGIKELKPKCQ 3801
IPINGIF RNSI AYFDDPQYR QSSGITKYRTIGIHSI +KED LIEYRG+KE KPK Q
Sbjct: 601 IPINGIFRRNSILAYFDDPQYRTQSSGITKYRTIGIHSILKKEDFLIEYRGVKEFKPKYQ 660
Query: 3802 IKVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXX 3981
IKVDRFFFIPEEVHILPESSSIMVRNNSI+G+DTPITLNIRSRVGGLVR
Sbjct: 661 IKVDRFFFIPEEVHILPESSSIMVRNNSIVGVDTPITLNIRSRVGGLVRVEKKKKRIELK 720
Query: 3982 XFSGDIHFPGEMDKISRHSAILIPPG-TVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLV 4158
FSG+I+FPGEMDKISRHSAILIPPG TV NWIYVQWI TTKKKYFVLV
Sbjct: 721 IFSGNIYFPGEMDKISRHSAILIPPGTTVKKKNSKESKKKKNWIYVQWITTTKKKYFVLV 780
Query: 4159 RPVILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCL 4338
RPVILYEI D IN VKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCL
Sbjct: 781 RPVILYEIADGINLVKLFPQDLFQERDNLELKVINYILYGNGKSIRGISDTRIQLVRTCL 840
Query: 4339 VLNWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDN 4518
VLNWDQDKKSSSIEEA ASFVEVSTNGLI FLRIDLVKSH SY RKR D SGSGLISDN
Sbjct: 841 VLNWDQDKKSSSIEEARASFVEVSTNGLIGDFLRIDLVKSHISYFRKRNDLSGSGLISDN 900
Query: 4519 ESDRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNV 4698
ES NINPFYSI+SKAKIQQSLSQNHGTIRMLLNRNKEC+SLIILSS NCFQ FN+
Sbjct: 901 ESHPTNINPFYSIYSKAKIQQSLSQNHGTIRMLLNRNKECRSLIILSSYNCFQMGLFNDG 960
Query: 4699 KYHNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXX 4878
KYHN IK+GINK K+DPIIPI+NSLGPLGIAL +SNF SFY LITHNQISI
Sbjct: 961 KYHNGIKEGINKLKRDPIIPIKNSLGPLGIALQVSNFDSFYHLITHNQISIN---QNWKL 1017
Query: 4879 XXXXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFI 5058
ETFQV+KYYLMDENE+IYKPDL +NIVLNPFHLNWYFL+HN CEKTFTIISLGQFI
Sbjct: 1018 DKLKETFQVLKYYLMDENERIYKPDLCSNIVLNPFHLNWYFLHHNYCEKTFTIISLGQFI 1077
Query: 5059 CENICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDIL 5238
CEN+CIAQTKNGPH LKSGQ+LTVQMDSV+IRSANPYLATPGAT+HGHYGEIL+EGDIL
Sbjct: 1078 CENVCIAQTKNGPH--LKSGQILTVQMDSVVIRSANPYLATPGATVHGHYGEILYEGDIL 1135
Query: 5239 VTFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIG 5418
VTFIYEKSRSGDITQGLPKVEQ+LEVRSIDSISMNLEKRIDAWN ITRILGIPWGFLIG
Sbjct: 1136 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNGRITRILGIPWGFLIG 1195
Query: 5419 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 5598
AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI
Sbjct: 1196 AELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1255
Query: 5599 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 5778
GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1256 GLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1315
Query: 5779 KGLKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLE-KQNNFFEVEIRNILFHHRKLFD 5955
KGLKENVVLGGMIPVGTGFKRIM+ SR RQHNKITLE K+ N FE ++R+ILFHHR+ F
Sbjct: 1316 KGLKENVVLGGMIPVGTGFKRIMYHSRPRQHNKITLETKKKNLFEGKMRDILFHHREFFF 1375
Query: 5956 F 5958
F
Sbjct: 1376 F 1376
>AJE72514.1 RNA polymerase beta'' subunit (plastid) [Medicago lupulina]
Length = 1368
Score = 2363 bits (6123), Expect = 0.0
Identities = 1206/1377 (87%), Positives = 1256/1377 (91%), Gaps = 2/1377 (0%)
Frame = +1
Query: 1831 MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGID 2010
M+ERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGF QATATSISLGID
Sbjct: 1 MSERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSISLGID 60
Query: 2011 DLLTIPSKGWLVQDAEQQSLILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2190
DLLTIPSK WLVQDAEQQS ILEK NHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKRWLVQDAEQQSSILEKQNHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2191 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2370
MTDPFNPV+IMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVYIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2371 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTQNGMMPERLL 2550
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNT+NGM+PER+L
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERIL 240
Query: 2551 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRLRTFQTQAIFIRTPFTCRNTSWICRL 2730
IQTLIGRV+ADDIYIGSRCIVVRNQDIGIGLINRL TFQTQ IFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRLITFQTQPIFIRTPFTCRNTSWICRL 300
Query: 2731 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEYVRAPSNGKI 2910
CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEYVRAPSNGK+
Sbjct: 301 CYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKL 360
Query: 2911 KFNEDLVHPTRTRHGYPAFLCNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVI 3090
KFNEDLVHP RTRHGYPAF+CNIDLYVTIESDDIIHNVIIPPKS LLVQNDQYVKSEQVI
Sbjct: 361 KFNEDLVHPARTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSLLLVQNDQYVKSEQVI 420
Query: 3091 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGK 3270
AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEF+YSNVHILPKTSHLWILSGK
Sbjct: 421 AEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWILSGK 480
Query: 3271 SCRYDAIDFLLRRDQDQINIHSLSTGKRNISNLLVSNDQVKHKLLSFNTFGTKESRITNY 3450
SCR D I FLLR+DQDQINI SLSTGK NISNLLVSND+VK KLLS NTFGTKE I+NY
Sbjct: 481 SCRSDTIHFLLRKDQDQINIDSLSTGKINISNLLVSNDEVKRKLLSLNTFGTKEKGISNY 540
Query: 3451 SIFNQIK--DHCHFMYPAIFHDTSDLLAKRRRNRFIIPFPLQSIQERKNELMSPSGVSIE 3624
SIFNQ++ DH M P IFH T L AKRRRNRF+IPF QSIQERKNEL+SPSGVSIE
Sbjct: 541 SIFNQMRCTDHSDLMDPTIFHKTFYLWAKRRRNRFLIPF--QSIQERKNELISPSGVSIE 598
Query: 3625 IPINGIFHRNSIFAYFDDPQYRRQSSGITKYRTIGIHSIFQKEDLIEYRGIKELKPKCQI 3804
IPINGIFHRNSIFAYFDDPQYRRQ+SGITKYRTIGIHS+FQKED IEYRGIKELK K QI
Sbjct: 599 IPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTIGIHSVFQKEDFIEYRGIKELKSKYQI 658
Query: 3805 KVDRFFFIPEEVHILPESSSIMVRNNSIIGIDTPITLNIRSRVGGLVRXXXXXXXXXXXX 3984
KVDRFFFIPEEVHILPESSSIMVRNNS++GI TPIT IRSRVGGLVR
Sbjct: 659 KVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFTIRSRVGGLVRLEKKKKKIELKI 718
Query: 3985 FSGDIHFPGEMDKISRHSAILIPPGTVXXXXXXXXXXXXNWIYVQWIATTKKKYFVLVRP 4164
FSG+IHFPGE DKISRH++ILIPP TV NWIYVQWIATTKKK FVLVRP
Sbjct: 719 FSGNIHFPGERDKISRHNSILIPPRTV-KKKWKESKKINNWIYVQWIATTKKKSFVLVRP 777
Query: 4165 VILYEIPDSINFVKLFPQDLFQERDNLELKVLNYILYGNGKSIRGISDTRIQLVRTCLVL 4344
VILYEIPDSI+FVKLFPQDLFQERDNLELKV+NYILYGNGKSIRGISDTRIQLVRTCLVL
Sbjct: 778 VILYEIPDSIDFVKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVL 837
Query: 4345 NWDQDKKSSSIEEALASFVEVSTNGLIEYFLRIDLVKSHTSYIRKRKDPSGSGLISDNES 4524
NWDQ KKS SIEEA +SFVEVSTNGLIEYFLRIDLVKS+TSYIRKR DPSG GLI+DNES
Sbjct: 838 NWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTSYIRKRNDPSGLGLIADNES 897
Query: 4525 DRININPFYSIHSKAKIQQSLSQNHGTIRMLLNRNKECQSLIILSSSNCFQTRSFNNVKY 4704
DRININPF+SIHSKAKIQ+SLSQNHGTIRM LNRNKEC+S IILSSSNCFQ R FNN+KY
Sbjct: 898 DRININPFFSIHSKAKIQKSLSQNHGTIRMFLNRNKECRSWIILSSSNCFQIRPFNNLKY 957
Query: 4705 HNEIKKGINKFKKDPIIPIQNSLGPLGIALPISNFYSFYRLITHNQISITXXXXXXXXXX 4884
HN I KK+P IPI NSLGPLGIA + NF+S YRLITHNQISI
Sbjct: 958 HNGI-------KKNPKIPINNSLGPLGIARQVGNFFSLYRLITHNQISI---MKNFQLDK 1007
Query: 4885 XXETFQVIKYYLMDENEKIYKPDLYNNIVLNPFHLNWYFLNHNSCEKTFTIISLGQFICE 5064
E FQVIKYYLMDEN+KI+KPDL +NIVLNPFHLNWYFL+H CEKTFTIISLGQFICE
Sbjct: 1008 ITEIFQVIKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISLGQFICE 1067
Query: 5065 NICIAQTKNGPHLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILFEGDILVT 5244
NICIA+ KNGPHLKLKSGQV+TVQMDSVIIRSANPYL TPGATIHGHYGEIL++GDILVT
Sbjct: 1068 NICIAKMKNGPHLKLKSGQVITVQMDSVIIRSANPYLVTPGATIHGHYGEILYQGDILVT 1127
Query: 5245 FIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 5424
FIYEKSRS DITQGLPKVEQILE+RSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE
Sbjct: 1128 FIYEKSRSSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAE 1187
Query: 5425 LTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 5604
LTIAQSRISL+NKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL
Sbjct: 1188 LTIAQSRISLLNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 1247
Query: 5605 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 5784
LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1248 LRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1307
Query: 5785 LKENVVLGGMIPVGTGFKRIMHRSRSRQHNKITLEKQNNFFEVEIRNILFHHRKLFD 5955
LKENVVLGGMIPVGTGFKRIMHRSRSRQ+NKITL+K+ FEVEIRN+LFHHRKLF+
Sbjct: 1308 LKENVVLGGMIPVGTGFKRIMHRSRSRQYNKITLKKK-KLFEVEIRNLLFHHRKLFE 1363