BLASTX nr result
ID: Glycyrrhiza29_contig00041026
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza29_contig00041026
(364 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP43099.1 Retrovirus-related Pol polyprotein from transposon TN... 134 1e-37
KYP72819.1 Retrovirus-related Pol polyprotein from transposon TN... 112 1e-26
AAD14478.1 Strong similarity to gb|AF039376 Evelknievel retrotra... 108 3e-25
JAU78288.1 putative mitochondrial protein, partial [Noccaea caer... 101 1e-23
KYP46820.1 Retrovirus-related Pol polyprotein from transposon TN... 98 5e-23
KYP46819.1 Retrovirus-related Pol polyprotein from transposon TN... 98 5e-23
KYP46792.1 Retrovirus-related Pol polyprotein from transposon TN... 98 5e-23
CAN83506.1 hypothetical protein VITISV_027576 [Vitis vinifera] 100 2e-22
CAN79733.1 hypothetical protein VITISV_016615 [Vitis vinifera] 98 2e-21
CAB46043.1 retrotransposon like protein [Arabidopsis thaliana] C... 98 3e-21
CAN77680.1 hypothetical protein VITISV_040762 [Vitis vinifera] 97 3e-21
XP_010507514.1 PREDICTED: uncharacterized protein LOC104784148 [... 97 5e-21
BAA78424.1 polyprotein [Arabidopsis thaliana] BAM44533.1 polypro... 97 6e-21
AAC02672.1 polyprotein, partial [Arabidopsis arenosa] 97 6e-21
BAM44532.1 polyprotein [Arabidopsis thaliana] 97 6e-21
AAC02666.1 polyprotein [Arabidopsis thaliana] 97 6e-21
AAC02664.1 polyprotein [Arabidopsis thaliana] 97 6e-21
AAC02669.1 polyprotein [Arabidopsis thaliana] 97 6e-21
AAC79110.1 putative polyprotein of LTR transposon [Arabidopsis t... 97 7e-21
BAA78426.1 polyprotein [Arabidopsis thaliana] 97 7e-21
>KYP43099.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 184
Score = 134 bits (338), Expect = 1e-37
Identities = 60/92 (65%), Positives = 73/92 (79%)
Frame = +3
Query: 87 LQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVIPSGSFPASFSC 266
+QGKTE+ +YKL L P L+HVHSHPSI LW + LGHPH QVLK + P P SF+C
Sbjct: 1 MQGKTEEDMYKLQLPSFSPKLHHVHSHPSIKLWCNHLGHPHFQVLKHIFPFKFTPTSFTC 60
Query: 267 PDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
DCL++KSH++PFFKSTLS+T+PLEIIFSDVW
Sbjct: 61 SDCLSNKSHQIPFFKSTLSTTRPLEIIFSDVW 92
>KYP72819.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 814
Score = 112 bits (281), Expect = 1e-26
Identities = 58/106 (54%), Positives = 73/106 (68%), Gaps = 4/106 (3%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVIP 236
VK L+TGA+LL+G+ E VYKL S P P +H +S PSI LWHHRLGH + L +
Sbjct: 93 VKDLQTGAILLRGRNEGNVYKLRPSLPPPQSHHAYSQPSIQLWHHRLGHLASRTLHHTLK 152
Query: 237 SGSF---PASFS-CPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+ P+S S C DCL +KSHKLPF +S+LSS+ PLEII+SDVW
Sbjct: 153 ANKLQHSPSSSSLCLDCLQNKSHKLPFHRSSLSSSVPLEIIYSDVW 198
>AAD14478.1 Strong similarity to gb|AF039376 Evelknievel retrotransposon
polyprotein from Arabidopsis arenosa [Arabidopsis
thaliana]
Length = 1194
Score = 108 bits (271), Expect = 3e-25
Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
VK L+TG LLQG+T+D++Y+ P++PP PS + + P +L WH RLGHP L LK V
Sbjct: 380 VKDLKTGVQLLQGRTKDELYEWPVNPPKPSSHFTTTTPKTDLTSWHSRLGHPSLSTLKVV 439
Query: 231 IPSGSFPAS------FSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+ S P S F+C DCL +K+HKLPF +T++ST+PLE ++ D+W
Sbjct: 440 VSQFSLPVSNSLQKQFNCSDCLLNKTHKLPFHTNTITSTQPLEYLYIDLW 489
>JAU78288.1 putative mitochondrial protein, partial [Noccaea caerulescens]
Length = 275
Score = 101 bits (251), Expect = 1e-23
Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 10/112 (8%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPS----INLWHHRLGHPHLQVLK 224
VK L++G LL GKT D++Y+ P++ P +N PS + WH RLGHP +L
Sbjct: 158 VKDLKSGVPLLCGKTRDELYEWPMT--VPQVNAAFLSPSSKTTLASWHSRLGHPSPPILN 215
Query: 225 RVIPSGSFPASF------SCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+I S S P SF SC DCL +KSHKLPF KST+ STKPL+ ++SDVW
Sbjct: 216 NLISSFSLPVSFPSQKLLSCTDCLINKSHKLPFSKSTIVSTKPLQYLYSDVW 267
>KYP46820.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 219
Score = 98.2 bits (243), Expect = 5e-23
Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVIP 236
VK L T +LL+G+ ED +YKLP +++HV I+LWHHRLGHP+ V +
Sbjct: 10 VKDLTTMEILLRGRNEDHLYKLPNHKSVTTIHHVFKSSPIHLWHHRLGHPNNCVFHCDLK 69
Query: 237 SGSFP---ASFSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+ + P + C D L +KSHKL F KS+LSS KPLE+++SDVW
Sbjct: 70 TNNLPFVSLNKKCTDYLQNKSHKLCFHKSSLSSNKPLELVYSDVW 114
>KYP46819.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 224
Score = 98.2 bits (243), Expect = 5e-23
Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVIP 236
VK L T +LL+G+ ED +YKLP +++HV I+LWHHRLGHP+ V +
Sbjct: 15 VKDLTTMEILLRGRNEDHLYKLPNHKSVTTIHHVFKSSPIHLWHHRLGHPNNCVFHCDLK 74
Query: 237 SGSFP---ASFSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+ + P + C D L +KSHKL F KS+LSS KPLE+++SDVW
Sbjct: 75 TNNLPFVSLNKKCTDYLQNKSHKLCFHKSSLSSNKPLELVYSDVW 119
>KYP46792.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 224
Score = 98.2 bits (243), Expect = 5e-23
Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVIP 236
VK L T +LL+G+ ED +YKLP +++HV I+LWHHRLGHP+ V +
Sbjct: 15 VKDLTTMEILLRGRNEDHLYKLPNHKSVTTIHHVFKSSPIHLWHHRLGHPNNCVFHCDLK 74
Query: 237 SGSFP---ASFSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+ + P + C D L +KSHKL F KS+LSS KPLE+++SDVW
Sbjct: 75 TNNLPFVSLNKKCTDYLQNKSHKLCFHKSSLSSNKPLELVYSDVW 119
>CAN83506.1 hypothetical protein VITISV_027576 [Vitis vinifera]
Length = 1172
Score = 100 bits (250), Expect = 2e-22
Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 6/109 (5%)
Frame = +3
Query: 54 MVKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVI 233
+VK LRTGA LL+GKT+D VY+ +S P + + V + S + WHHRLGHP +LK VI
Sbjct: 324 LVKDLRTGATLLKGKTKDGVYEWLVSSPLLAFSSVKT--SSSEWHHRLGHPAFPILKHVI 381
Query: 234 PSGSFPAS------FSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+ + S FSC C +KSHKL F ST++S++PL+I++SDVW
Sbjct: 382 STNNLALSSSSLLHFSCNTCHCNKSHKLSFSNSTINSSRPLQILYSDVW 430
>CAN79733.1 hypothetical protein VITISV_016615 [Vitis vinifera]
Length = 807
Score = 97.8 bits (242), Expect = 2e-21
Identities = 53/108 (49%), Positives = 67/108 (62%), Gaps = 6/108 (5%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVIP 236
VK LR+GA+L QG T+D VY+ +P P L + + WHHRLGHP L +L+ ++
Sbjct: 170 VKDLRSGAILFQGSTKDGVYEWT-TPKNPILAFSTAKITSINWHHRLGHPALPILQHILS 228
Query: 237 ------SGSFPASFSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
S S P FSC CL +KSHKLPF S+L ST PL+IIF DVW
Sbjct: 229 NSCLESSSSMPKDFSCTACLYNKSHKLPFSTSSLVSTHPLQIIFYDVW 276
>CAB46043.1 retrotransposon like protein [Arabidopsis thaliana] CAB80958.1
retrotransposon like protein [Arabidopsis thaliana]
Length = 1474
Score = 97.8 bits (242), Expect = 3e-21
Identities = 51/110 (46%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
VK L TG +LLQG+T+D++Y+ P++ P + P L WH RLGHP +L +
Sbjct: 424 VKDLNTGTLLLQGRTKDELYEWPVTNPKATALFTTPSPKTTLSSWHSRLGHPSSSILNTL 483
Query: 231 IPSGSFPASFS------CPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
I S P S S C DC +KSHKLPF S++ ST PLE IFSDVW
Sbjct: 484 ISKFSLPVSVSASNKLACSDCFINKSHKLPFSISSIKSTSPLEYIFSDVW 533
>CAN77680.1 hypothetical protein VITISV_040762 [Vitis vinifera]
Length = 590
Score = 97.4 bits (241), Expect = 3e-21
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Frame = +3
Query: 54 MVKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVI 233
+VK RTG +LLQG E+ VY +P SP + VH S+ WH RLGHP +V+ R+I
Sbjct: 388 LVKDRRTGEILLQGPCENGVYPMPSSPAATPIAFVHERTSVTGWHQRLGHPSFKVVTRLI 447
Query: 234 PSGSFP------ASFSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
S S P S +C C +K+H+LPF K L+ST P +++++DVW
Sbjct: 448 SSFSLPTTSCLSGSNNCHSCSINKAHQLPFHKHGLTSTTPFDLLYTDVW 496
>XP_010507514.1 PREDICTED: uncharacterized protein LOC104784148 [Camelina sativa]
Length = 497
Score = 96.7 bits (239), Expect = 5e-21
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
VK L+TGA LLQG+T++++Y+ P+ + P +L WH+R GHP L VLK +
Sbjct: 366 VKDLKTGAQLLQGRTKNELYEWPVINNVITSFTTSPQPRTDLSSWHYRFGHPSLPVLKII 425
Query: 231 IPSGSFPAS------FSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
+ S P S FSC DC +KSHKLPF +T++ST+ LE I+SDVW
Sbjct: 426 VSEFSLPFSSKTQQQFSCSDCFINKSHKLPFHSNTITSTRSLEYIYSDVW 475
>BAA78424.1 polyprotein [Arabidopsis thaliana] BAM44533.1 polyprotein
[Arabidopsis thaliana]
Length = 1330
Score = 96.7 bits (239), Expect = 6e-21
Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 11/113 (9%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPP-----FPSLNHVHSHPSINLWHHRLGHPHLQVL 221
VK L TG LLQGKT+D++Y+ P++ F S +H S WH RLGHP L +L
Sbjct: 276 VKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSS---WHSRLGHPSLAIL 332
Query: 222 KRVIPSGSFPAS------FSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
VI + S P SC DC +KSHK+PF ST++S+KPLE I+SDVW
Sbjct: 333 NSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVW 385
>AAC02672.1 polyprotein, partial [Arabidopsis arenosa]
Length = 1390
Score = 96.7 bits (239), Expect = 6e-21
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
VK L TGA LLQGKT++++Y+ P++ + P +L WH RLGHP L +LK +
Sbjct: 425 VKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTDLPSWHARLGHPSLPILKTL 484
Query: 231 IPSGSFPASFS------CPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
I S P S S C DC +KSHKLPF+ +T++S+ PLE +++DVW
Sbjct: 485 ISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLYTDVW 534
>BAM44532.1 polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 96.7 bits (239), Expect = 6e-21
Identities = 52/110 (47%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPL--SPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRV 230
VK L TG LLQGKT+D++Y+ P+ S S + LWH RLGHP L +L V
Sbjct: 421 VKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHCLWHSRLGHPSLAILNSV 480
Query: 231 IPSGSFPAS------FSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
I + S P SC DC +KSHK+PF ST++S+KPLE I+SDVW
Sbjct: 481 ISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVW 530
>AAC02666.1 polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 96.7 bits (239), Expect = 6e-21
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
VK L TGA LLQGKT++++Y+ P++ + P +L WH RLGHP L +LK +
Sbjct: 425 VKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTDLPSWHARLGHPSLPILKAL 484
Query: 231 IPSGSFPASFS------CPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
I S P S S C DC +KSHKLPF+ +T++S+ PLE +++DVW
Sbjct: 485 ISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLYTDVW 534
>AAC02664.1 polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 96.7 bits (239), Expect = 6e-21
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
VK L TGA LLQGKT++++Y+ P++ + P +L WH RLGHP L +LK +
Sbjct: 425 VKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTDLPSWHARLGHPSLPILKAL 484
Query: 231 IPSGSFPASFS------CPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
I S P S S C DC +KSHKLPF+ +T++S+ PLE +++DVW
Sbjct: 485 ISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLYTDVW 534
>AAC02669.1 polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 96.7 bits (239), Expect = 6e-21
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
VK L TGA LLQGKT++++Y+ P++ + P +L WH RLGHP L +LK +
Sbjct: 425 VKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTDLPSWHARLGHPSLPILKAL 484
Query: 231 IPSGSFPASFS------CPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
I S P S S C DC +KSHKLPF+ +T++S+ PLE +++DVW
Sbjct: 485 ISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLYTDVW 534
>AAC79110.1 putative polyprotein of LTR transposon [Arabidopsis thaliana]
CAB77781.1 putative polyprotein of LTR transposon
[Arabidopsis thaliana]
Length = 1456
Score = 96.7 bits (239), Expect = 7e-21
Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 11/113 (9%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPP-----FPSLNHVHSHPSINLWHHRLGHPHLQVL 221
VK L TG LLQGKT+D++Y+ P++ F S +H S WH RLGHP L +L
Sbjct: 402 VKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSS---WHSRLGHPSLAIL 458
Query: 222 KRVIPSGSFPAS------FSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
VI + S P SC DC +KSHK+PF ST++S+KPLE I+SDVW
Sbjct: 459 NSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVW 511
>BAA78426.1 polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 96.7 bits (239), Expect = 7e-21
Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 11/113 (9%)
Frame = +3
Query: 57 VKSLRTGAVLLQGKTEDQVYKLPLSPP-----FPSLNHVHSHPSINLWHHRLGHPHLQVL 221
VK L TG LLQGKT+D++Y+ P++ F S +H S WH RLGHP L +L
Sbjct: 421 VKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSS---WHSRLGHPSLAIL 477
Query: 222 KRVIPSGSFPAS------FSCPDCLASKSHKLPFFKSTLSSTKPLEIIFSDVW 362
VI + S P SC DC +KSHK+PF ST++S+KPLE I+SDVW
Sbjct: 478 NSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVW 530