BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza29_contig00010550
         (856 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GAU15708.1 hypothetical protein TSUD_307180 [Trifolium subterran...   318   3e-96
KYP70579.1 Retrovirus-related Pol polyprotein from transposon TN...   282   8e-92
KYP36109.1 Retrovirus-related Pol polyprotein from transposon TN...   298   6e-90
KYP47160.1 Retrovirus-related Pol polyprotein from transposon TN...   277   6e-90
KYP47181.1 Retrovirus-related Pol polyprotein from transposon TN...   277   4e-88
GAU38852.1 hypothetical protein TSUD_154140 [Trifolium subterran...   289   1e-85
KYP44664.1 Retrovirus-related Pol polyprotein from transposon TN...   264   1e-84
GAU36337.1 hypothetical protein TSUD_321760 [Trifolium subterran...   283   1e-84
GAU46782.1 hypothetical protein TSUD_351810 [Trifolium subterran...   285   4e-84
KYP72197.1 Retrovirus-related Pol polyprotein from transposon TN...   265   1e-83
GAU31058.1 hypothetical protein TSUD_214940 [Trifolium subterran...   278   2e-83
KYP68194.1 Retrovirus-related Pol polyprotein from transposon TN...   275   1e-82
GAU31769.1 hypothetical protein TSUD_22150 [Trifolium subterraneum]   280   2e-82
GAU47513.1 hypothetical protein TSUD_138850 [Trifolium subterran...   280   2e-82
KHN01991.1 Retrovirus-related Pol polyprotein from transposon TN...   278   4e-82
KYP62795.1 Retrovirus-related Pol polyprotein from transposon TN...   257   8e-82
KYP68601.1 Retrovirus-related Pol polyprotein from transposon TN...   263   5e-81
AJY78067.1 putative polyprotein [Glycine max]                         267   9e-80
KYP61332.1 Retrovirus-related Pol polyprotein from transposon TN...   261   2e-79
KYP64431.1 Retrovirus-related Pol polyprotein from transposon TN...   264   6e-79

>GAU15708.1 hypothetical protein TSUD_307180 [Trifolium subterraneum]
          Length = 1433

 Score =  318 bits (816), Expect = 3e-96
 Identities = 142/275 (51%), Positives = 202/275 (73%)
 Frame = -3

Query: 845  QRKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDM 666
            QR IGSGKL +GLY+L+        +V  V  TV + ++IP SA+WHFRFGHAS +++++
Sbjct: 456  QRMIGSGKLLNGLYYLEGTNASTHSLVKPVTGTVCTVFSIPQSALWHFRFGHASNSRLEI 515

Query: 665  LSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGYR 486
            + K++P+I +NK  VCD+CHLA+Q++L + +S +++  CF+L+H+D+WGP S  ++HG++
Sbjct: 516  MHKSYPSISINKDCVCDVCHLAKQKKLSYSLSTSKSTKCFELLHMDIWGPYSTATLHGHK 575

Query: 485  FFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVC 306
            +FLTIVDD SR+ W +LLKGK EV   V  F ++VENQF   VK +RSDNG EF+LS   
Sbjct: 576  YFLTIVDDFSRFTWVILLKGKNEVASHVQHFIHLVENQFESTVKIVRSDNGPEFSLSSFY 635

Query: 305  RERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRM 126
              + I+HQ SCV T +QN RVERKHQ +L++ARAL++Q+ LP   W YA+LH+V+L+NRM
Sbjct: 636  ASKRIVHQTSCVYTPQQNGRVERKHQCILAIARALLIQSHLPAKYWGYAVLHSVYLMNRM 695

Query: 125  PSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
            PSV +    PY  LH  LP ++ L++FGCLCY ST
Sbjct: 696  PSVAIEGGLPYHKLHNRLPDISMLKIFGCLCYVST 730


>KYP70579.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 288

 Score =  282 bits (722), Expect = 8e-92
 Identities = 136/273 (49%), Positives = 188/273 (68%), Gaps = 1/273 (0%)
 Frame = -3

Query: 836 IGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSK 657
           IG  +   GLY+L     K     S +N +   + T   +A+WHFR GH S ++++MLS+
Sbjct: 2   IGFAEEVDGLYYLIKTCQKPTTNTSQINTSSTHNSTYSPNALWHFRLGHISESRLNMLSE 61

Query: 656 NFPAIH-VNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGYRFF 480
            +  I+  N   VCD+CH A+QR+LPF VSN++    F+L+HLD+WGP S+ +++  R+F
Sbjct: 62  LYSFINNCNHKHVCDVCHFAKQRKLPFSVSNSKTSRPFELLHLDLWGPYSIQTVNHQRYF 121

Query: 479 LTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRE 300
           LTIVDD+SRY W +LLK K + +  +  F  +V+ QF  K+K IR+DNG EF L    +E
Sbjct: 122 LTIVDDYSRYTWVILLKNKSQTEQSLRHFSKLVDRQFHSKIKTIRTDNGPEFFLHSFYQE 181

Query: 299 RGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPS 120
            GIIHQ SCVET +QN RVER+HQ +L+VARAL+ Q +LPK  W +A+ H VHLIN++P+
Sbjct: 182 EGIIHQTSCVETPQQNGRVERRHQTILNVARALLFQGNLPKSFWGFAVTHVVHLINKVPT 241

Query: 119 VVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
            VL S SPYQ+L+G LP L +LRVFGCLCY S+
Sbjct: 242 QVLGSKSPYQILYGELPDLKHLRVFGCLCYISS 274


>KYP36109.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1115

 Score =  298 bits (763), Expect = 6e-90
 Identities = 146/275 (53%), Positives = 192/275 (69%)
 Frame = -3

Query: 842 RKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDML 663
           + IGS  LK GL+HLD G  +     S  NAT      I NS +WHFR GH S  ++++L
Sbjct: 158 KMIGSANLKEGLFHLDIGKERRS---STNNATATP---INNSNLWHFRLGHLSSNRLNVL 211

Query: 662 SKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGYRF 483
           ++ FP I  + + VCD+CH A+Q++L +  S++R    FDL+H+D+WGP S  SIHG+++
Sbjct: 212 NQQFPFISKHSNEVCDVCHFAKQKKLSYSPSSSRVSKIFDLIHMDIWGPFSKASIHGHKY 271

Query: 482 FLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCR 303
           FLTI+DD SRY W VLLK K EVK  V  F N+VENQ+  KVK IRSDNG EF L D   
Sbjct: 272 FLTILDDFSRYTWVVLLKSKSEVKTHVHNFINLVENQYETKVKCIRSDNGPEFFLRDFFN 331

Query: 302 ERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMP 123
            +GIIHQ SCV T +QN RVERKHQH+L+VARALM Q+ LP   WSYAI HA+ LINR+P
Sbjct: 332 SKGIIHQTSCVYTPQQNGRVERKHQHILNVARALMFQSKLPSNFWSYAIKHAIFLINRVP 391

Query: 122 SVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTN 18
           S +++  +P++LL+ + P  + L+VFGCLCY ST+
Sbjct: 392 SPIISHKTPFELLNKIPPDFSMLKVFGCLCYASTH 426


>KYP47160.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 284

 Score =  277 bits (709), Expect = 6e-90
 Identities = 129/280 (46%), Positives = 191/280 (68%), Gaps = 5/280 (1%)
 Frame = -3

Query: 845 QRKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSA-----IWHFRFGHASL 681
           QR IG  K    LY +        P VSH N+  +S++           +WHFR GH S 
Sbjct: 7   QRMIGLAKANQHLYLMHN------PCVSHSNSICNSAFVSKTQNKNMFDLWHFRLGHPSY 60

Query: 680 AKIDMLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPS 501
             + ++ K+ P +  N + VCD CHLA+Q RLPF VSN+++ +CF+L+H+D+WGP ++ S
Sbjct: 61  QVLKIVKKHSPYVEFNDNTVCDYCHLAKQSRLPFPVSNSKSFSCFELVHMDIWGPIAITS 120

Query: 500 IHGYRFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFN 321
           IHG+RFFLTIV+D SR+ WT L+K K E +  +  F  ++E +F++++K IR+DNG+EF 
Sbjct: 121 IHGHRFFLTIVNDFSRHTWTFLMKSKAETRKLIHNFVALIETRFNKRIKTIRTDNGSEFL 180

Query: 320 LSDVCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVH 141
           + D   + GI+HQ SC+ET +QN+ VERKH+H+L+V R+L+  ++LPK  W+YA+ +AVH
Sbjct: 181 MHDFYAQHGILHQTSCIETPQQNSVVERKHRHILNVTRSLLFHSNLPKVFWNYAVSYAVH 240

Query: 140 LINRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
           LINR+PS VLN+ SP+Q+L+     L +L+VFGCLC+  T
Sbjct: 241 LINRLPSPVLNNCSPFQMLYDQSHTLLDLKVFGCLCFAGT 280


>KYP47181.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 417

 Score =  277 bits (709), Expect = 4e-88
 Identities = 129/280 (46%), Positives = 191/280 (68%), Gaps = 5/280 (1%)
 Frame = -3

Query: 845 QRKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSA-----IWHFRFGHASL 681
           QR IG  K    LY +        P VSH N+  +S++           +WHFR GH S 
Sbjct: 140 QRMIGLAKANQHLYLMHN------PCVSHSNSICNSAFVSKTQNKNMFDLWHFRLGHPSY 193

Query: 680 AKIDMLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPS 501
             + ++ K+ P +  N + VCD CHLA+Q RLPF VSN+++ +CF+L+H+D+WGP ++ S
Sbjct: 194 QVLKIVKKHSPYVEFNDNTVCDYCHLAKQSRLPFPVSNSKSFSCFELVHMDIWGPIAITS 253

Query: 500 IHGYRFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFN 321
           IHG+RFFLTIV+D SR+ WT L+K K E +  +  F  ++E +F++++K IR+DNG+EF 
Sbjct: 254 IHGHRFFLTIVNDFSRHTWTFLMKSKAETRKLIHNFVALIETRFNKRIKTIRTDNGSEFL 313

Query: 320 LSDVCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVH 141
           + D   + GI+HQ SC+ET +QN+ VERKH+H+L+V R+L+  ++LPK  W+YA+ +AVH
Sbjct: 314 MHDFYAQHGILHQTSCIETPQQNSVVERKHRHILNVTRSLLFHSNLPKVFWNYAVSYAVH 373

Query: 140 LINRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
           LINR+PS VLN+ SP+Q+L+     L +L+VFGCLC+  T
Sbjct: 374 LINRLPSPVLNNCSPFQMLYDQSHTLLDLKVFGCLCFAGT 413


>GAU38852.1 hypothetical protein TSUD_154140 [Trifolium subterraneum]
          Length = 1494

 Score =  289 bits (739), Expect = 1e-85
 Identities = 145/283 (51%), Positives = 197/283 (69%), Gaps = 2/283 (0%)
 Frame = -3

Query: 848  LQRKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKID 669
            LQR IGSG++ +GLY+L+  G    P +  +     +S  IPN+A+WHFRFGH S  +++
Sbjct: 479  LQRMIGSGRMLNGLYYLE--GTHSQPNL--LTGKQCNSLAIPNNALWHFRFGHTSQNRLE 534

Query: 668  MLSKNFPAIHVNK-SLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHG 492
            +L K +P I VNK    CD+CHLA+QR+LP+V S++RA    +L+H+D+WGP S  + HG
Sbjct: 535  ILQKLYPTIEVNKVDFCCDVCHLAKQRKLPYVTSSSRASVILELLHMDIWGPFSTSTTHG 594

Query: 491  YRFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEF-NLS 315
            +++FLTIVDD SR+ W VLLKGK+EV  KV EF N  EN F  KVK +RSDNG EF +LS
Sbjct: 595  HKYFLTIVDDFSRFTWIVLLKGKYEVASKVQEFINFAENHFCHKVKFLRSDNGQEFLSLS 654

Query: 314  DVCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLI 135
                 +GI HQ SCV T +QN RVERKHQ +L++ARALM Q+ LP   W YA+L +V ++
Sbjct: 655  KFYISKGIQHQTSCVYTPQQNGRVERKHQCILNIARALMTQSHLPAKYWGYAVLQSVFIM 714

Query: 134  NRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGR 6
            NR+PS  L    P+  L+G LP L++L+VFG LC+ ST+ + R
Sbjct: 715  NRVPSNALKGQIPFVALYGKLPELSDLKVFGSLCFVSTHDNQR 757


>KYP44664.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 290

 Score =  264 bits (675), Expect = 1e-84
 Identities = 115/230 (50%), Positives = 161/230 (70%)
 Frame = -3

Query: 710 WHFRFGHASLAKIDMLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHL 531
           WHFR GH S  ++ ++   +P +  NK+  C+ CH  + ++L F  S + A NCFDL+H+
Sbjct: 1   WHFRMGHLSTERLQLMQSCYPFLRSNKNFTCNTCHYEKHKKLSFPASKSHASNCFDLLHM 60

Query: 530 DVWGPCSLPSIHGYRFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKA 351
           D+WGPCS  S+HG+R+FLTIVDDHSR+ W  L+  K E +  + +F   +E QF+ K+K 
Sbjct: 61  DIWGPCSKLSMHGHRYFLTIVDDHSRFTWVYLMHTKTETRKNITDFIAYIETQFNNKIKI 120

Query: 350 IRSDNGTEFNLSDVCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYL 171
           IR+DNG+EF + D    +GIIHQ +CVET EQN  VERKHQHLL+V RAL+  A+LP+  
Sbjct: 121 IRTDNGSEFAMHDFFASKGIIHQTTCVETPEQNGIVERKHQHLLNVTRALLFHANLPQSF 180

Query: 170 WSYAILHAVHLINRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
           W +A+LHA +LIN +P+  L + SPY+ L+G    ++NLR+FGCLCY ST
Sbjct: 181 WCFALLHAAYLINCIPTPFLQNISPYEKLYGSPCDISNLRIFGCLCYIST 230


>GAU36337.1 hypothetical protein TSUD_321760 [Trifolium subterraneum]
          Length = 1094

 Score =  283 bits (725), Expect = 1e-84
 Identities = 139/276 (50%), Positives = 184/276 (66%), Gaps = 2/276 (0%)
 Frame = -3

Query: 842  RKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSA--IWHFRFGHASLAKID 669
            RKIG  K   GLY L        P     + +V S  T  N++  +WH R GH S  +I 
Sbjct: 435  RKIGLAKQSDGLYFLK-------PCQVSQSISVHSIDTSSNNSGLLWHLRLGHLSFERIK 487

Query: 668  MLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGY 489
             L+K +  I       CD+CH+A+Q+RLPF VSN+ A + FDL+H D+WGP S  S+HG+
Sbjct: 488  CLNKRYSYIPALDHNPCDVCHMAKQKRLPFPVSNSNATSSFDLIHADIWGPFSTVSVHGF 547

Query: 488  RFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDV 309
            ++FLTI+DDHSRY+W ++LK K EV   +  F NMV+ QF + +KAIR+DNG EF L   
Sbjct: 548  KYFLTILDDHSRYLWVIMLKTKHEVPAYIQGFVNMVKTQFGKLIKAIRTDNGPEFMLQSF 607

Query: 308  CRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINR 129
              E+GI+HQ SCV T +QNARVER+HQH+L+++RALM Q+ LPK  WS+AI HAV LINR
Sbjct: 608  YHEKGILHQKSCVSTPQQNARVERRHQHILNISRALMFQSGLPKVYWSHAIQHAVFLINR 667

Query: 128  MPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
             P+ +L   SP+++LHG  P L  L+ FGCLCY ST
Sbjct: 668  TPTKLLVDKSPFEILHGAEPNLTVLKPFGCLCYAST 703


>GAU46782.1 hypothetical protein TSUD_351810 [Trifolium subterraneum]
          Length = 1512

 Score =  285 bits (728), Expect = 4e-84
 Identities = 135/276 (48%), Positives = 192/276 (69%), Gaps = 2/276 (0%)
 Frame = -3

Query: 842  RKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVD--SSYTIPNSAIWHFRFGHASLAKID 669
            + IGSG+L  GLY+L     K  PV ++ + +++  S+  IP  A+WHFR GH S A++ 
Sbjct: 495  KMIGSGELIEGLYYLT---NKPQPVSANSSISINPSSNIHIPKQALWHFRLGHLSHARLL 551

Query: 668  MLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGY 489
            ++  +FP + +++  VCDICHLAR ++L + +S N+A +C +L+H D+WGP S+ SIHG+
Sbjct: 552  LMQSSFPFVTIDEHAVCDICHLARHKKLTYKLSVNKASHCGELIHFDIWGPTSIHSIHGH 611

Query: 488  RFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDV 309
            R+FLT +DD SR+ W +LLK K EV   VI+F  M+E QF+  V+ IR+DNG EF + + 
Sbjct: 612  RYFLTAIDDFSRFTWVILLKSKAEVSSLVIQFITMIEKQFNTIVRTIRTDNGPEFLIPEF 671

Query: 308  CRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINR 129
               +GI HQ SCVET +QN RVERKHQHLL+V R+L+ Q+ LPK  WSYA+ HA ++INR
Sbjct: 672  YASKGINHQTSCVETPQQNGRVERKHQHLLNVGRSLLFQSKLPKKFWSYAVSHATYIINR 731

Query: 128  MPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
            + + +L + SPY LL+   P L  L+VFG LCY ST
Sbjct: 732  VCTPLLQNKSPYHLLYNKPPDLEQLKVFGSLCYAST 767


>KYP72197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 384

 Score =  265 bits (677), Expect = 1e-83
 Identities = 130/281 (46%), Positives = 187/281 (66%), Gaps = 4/281 (1%)
 Frame = -3

Query: 836 IGSGKLKHGLYHLDCGGG--KVVPVVSHVNATVDSS--YTIPNSAIWHFRFGHASLAKID 669
           IG+ K  +GL++L            ++HV+ +++ S   TI NS +WH R GH S   + 
Sbjct: 20  IGAAKQWNGLFYLQDSSDLDSHESSLNHVSPSLNFSDVTTIDNSMLWHLRLGHTSNKVLK 79

Query: 668 MLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGY 489
            LS  +  I       CD CH A+Q++LPF VSN ++   F+L+H+D+WGP +  SI G+
Sbjct: 80  HLSSKYNDIVFYCLQPCDTCHYAKQKKLPFPVSNCKSSRFFELIHVDIWGPVATTSIDGF 139

Query: 488 RFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDV 309
           ++FL++VDD SR+ W  L+K KF+VK  +  F  ++ENQF+ K++ IRSDNG EF+L+D 
Sbjct: 140 KYFLSVVDDFSRFTWIHLIKTKFDVKFMLPSFIQLIENQFTLKLQRIRSDNGKEFSLNDF 199

Query: 308 CRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINR 129
              +GI H+ SCVET +QN  VERKHQHLL+V+RAL+ QA+LP   WS+A+ HA HLINR
Sbjct: 200 FSTKGIFHETSCVETPQQNGIVERKHQHLLNVSRALLFQANLPTCFWSFAVRHATHLINR 259

Query: 128 MPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGR 6
           +P+  L   +PY+L++G  P LN L++FGCL Y +T  SGR
Sbjct: 260 LPTPFLKLKTPYELVYGHAPVLNTLKIFGCLAYANTISSGR 300


>GAU31058.1 hypothetical protein TSUD_214940 [Trifolium subterraneum]
          Length = 927

 Score =  278 bits (710), Expect = 2e-83
 Identities = 138/276 (50%), Positives = 182/276 (65%), Gaps = 2/276 (0%)
 Frame = -3

Query: 842  RKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSA--IWHFRFGHASLAKID 669
            RKIG  K   GLY L        P     + +V S  T  N++  +WH R GH S  +I 
Sbjct: 494  RKIGLAKQSDGLYFLK-------PCQVSQSISVHSIDTSSNNSGLLWHLRLGHLSFERIK 546

Query: 668  MLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGY 489
             L+K +  I       CD+CH+A+Q+RLPF VSN+ A + FDL+  D+WGP S+ S+HG+
Sbjct: 547  CLNKRYSYIPALDHNPCDVCHMAKQKRLPFPVSNSNATSSFDLIQADIWGPFSIVSVHGF 606

Query: 488  RFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDV 309
            ++FLTI DDHSRYIW ++LK K EV   +  F NMV+ QF + VKAIR++NG EF L   
Sbjct: 607  KYFLTIPDDHSRYIWVIMLKTKHEVPAYIQGFVNMVKTQFGKLVKAIRTNNGPEFMLQSF 666

Query: 308  CRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINR 129
              E+GI+HQ  CV T +QNARVER+HQH+L+++RALM Q+ LPK  WS+AI HAV  INR
Sbjct: 667  YHEKGILHQKRCVSTPQQNARVERRHQHILNISRALMFQSGLPKVYWSHAIQHAVFFINR 726

Query: 128  MPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
             P+ +L   SP+++LHGV P L  L+ FGCLCY ST
Sbjct: 727  TPTKLLADKSPFEILHGVEPDLTVLKPFGCLCYAST 762


>KYP68194.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 914

 Score =  275 bits (704), Expect = 1e-82
 Identities = 137/283 (48%), Positives = 190/283 (67%), Gaps = 4/283 (1%)
 Frame = -3

Query: 842  RKIGSGKLKHGLYH----LDCGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAK 675
            + IG+ K + GLY     ++     V   +S  N + +   ++PN  +WH+R GH    +
Sbjct: 478  KMIGTAKAERGLYIFTQIVESSQSSVYSTISE-NFSCNFPSSLPN--LWHYRLGHPCFDR 534

Query: 674  IDMLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIH 495
               LS+ FP I+ NK+ VCDICH+A+QR+L F +S++     F+L+H D+WGP  + SIH
Sbjct: 535  SQALSEMFPFIYCNKNHVCDICHIAKQRKLSFPLSSSSTNTIFELIHADIWGPVFVMSIH 594

Query: 494  GYRFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLS 315
            G+ +FLTIVDD+SR+ W  LLK K EV+  +  F  +VENQF   VK IR+DNG EF   
Sbjct: 595  GHSYFLTIVDDYSRHTWIYLLKNKAEVRPLIQAFCALVENQFQTTVKTIRTDNGKEFKFD 654

Query: 314  DVCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLI 135
                 +GI+HQ SCVET +QN+ VERKHQH+L+VARAL+ QA+LPK  WSYA+ H+V+LI
Sbjct: 655  QFYATKGIVHQTSCVETPQQNSIVERKHQHILNVARALLFQANLPKIFWSYAVTHSVYLI 714

Query: 134  NRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGR 6
            NR+P+ VL++  PYQLL+  LP L  L+VFG LC++ST  S R
Sbjct: 715  NRIPTPVLDNKCPYQLLYKCLPDLTQLKVFGSLCFSSTLVSHR 757


>GAU31769.1 hypothetical protein TSUD_22150 [Trifolium subterraneum]
          Length = 1372

 Score =  280 bits (715), Expect = 2e-82
 Identities = 139/281 (49%), Positives = 188/281 (66%), Gaps = 1/281 (0%)
 Frame = -3

Query: 845  QRKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYT-IPNSAIWHFRFGHASLAKID 669
            +R IGS  L  GLY+L     +V     H +    + +T IP+ A+W FR GH S  K+ 
Sbjct: 419  KRMIGSADLIEGLYYLTLTSEEV-----HAHNIDGTQHTNIPDQALWLFRLGHTSNTKMS 473

Query: 668  MLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGY 489
            +L   FP I V+   VCDICHLA+ ++L + VS N+A   ++L+H D+WGP +  SIH +
Sbjct: 474  LLQSVFPFIAVDNKGVCDICHLAKHKKLYYKVSMNKAYVPYELIHFDIWGPIASKSIHNH 533

Query: 488  RFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDV 309
             +FLT+VDD+SR+ W  L+K K E +  VI F  ++E Q + KVK +R+DNG EF ++  
Sbjct: 534  AYFLTVVDDYSRFTWVTLMKHKTEARQHVINFIKLIETQHNSKVKIVRTDNGVEFLITQF 593

Query: 308  CRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINR 129
               +GIIHQ SCVET EQN RVERKHQHLL+V RAL+ QA LPK+ WSY + HA ++INR
Sbjct: 594  YASKGIIHQTSCVETPEQNGRVERKHQHLLNVGRALLFQAHLPKFFWSYDVQHATYIINR 653

Query: 128  MPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGR 6
            +P VVL++ SPY+LLH VLP + +L+VFG L Y ST  S R
Sbjct: 654  VPFVVLSNKSPYELLHNVLPNIKDLKVFGSLAYASTLQSHR 694


>GAU47513.1 hypothetical protein TSUD_138850 [Trifolium subterraneum]
          Length = 1469

 Score =  280 bits (715), Expect = 2e-82
 Identities = 139/281 (49%), Positives = 187/281 (66%), Gaps = 1/281 (0%)
 Frame = -3

Query: 845  QRKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYT-IPNSAIWHFRFGHASLAKID 669
            +R IG   L  GLY+L     +V     H ++   + +T IP+ A+WHFR GH S  K+ 
Sbjct: 460  KRMIGFADLIEGLYYLTLTSKEV-----HAHSIDGTQHTNIPDQALWHFRLGHTSNTKMS 514

Query: 668  MLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGY 489
            +L   FP I V+   VCDICHLA+ ++L + VS N+A   ++L+H D+WGP +  SIH +
Sbjct: 515  LLQSVFPFITVDNKGVCDICHLAKHKKLYYKVSMNKATVPYELIHFDIWGPIASKSIHNH 574

Query: 488  RFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDV 309
             +FLT VDD+SR+ W  L+K K E +  VI F  ++E Q + KVK +R+ NG EF +   
Sbjct: 575  AYFLTAVDDYSRFTWVTLMKHKSEARQHVINFIKLIETQHNSKVKIVRTYNGVEFLMPQF 634

Query: 308  CRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINR 129
               +GI+HQ SCVET EQN RVERKHQHLL+V RAL+ QA LPK  WSYA+ HA ++INR
Sbjct: 635  YASKGIVHQTSCVETPEQNGRVERKHQHLLNVGRALLFQAHLPKMFWSYAVQHATYIINR 694

Query: 128  MPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGR 6
            +PSVVL++ SPY+LLH VLP + +L+VFG L Y ST  S R
Sbjct: 695  VPSVVLSNKSPYELLHNVLPDIKDLKVFGSLAYASTLQSHR 735


>KHN01991.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1311

 Score =  278 bits (712), Expect = 4e-82
 Identities = 131/278 (47%), Positives = 183/278 (65%), Gaps = 5/278 (1%)
 Frame = -3

Query: 839  KIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSAI-----WHFRFGHASLAK 675
            KIG  + KHGLYHL         +   VN  + S+   P   I     WHFR GH S  +
Sbjct: 364  KIGIVEEKHGLYHL---------IPDQVNKVICSTIIHPKCKIIPIDLWHFRMGHLSTER 414

Query: 674  IDMLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIH 495
            +  +  ++P +  +K+ VC+ CH A+ ++LPF  S + A + F L+H+D+WGPCS PS+H
Sbjct: 415  LQCMKPHYPILRNDKTFVCNTCHYAKHKKLPFSSSTSHASHIFYLLHVDIWGPCSKPSMH 474

Query: 494  GYRFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLS 315
            G+++FLTIVDDHSR+ W  L+  K E +  ++ F   VE Q+++K+K IRSDNG EF + 
Sbjct: 475  GHKYFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIASVETQYNKKIKKIRSDNGYEFLMP 534

Query: 314  DVCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLI 135
                 +GI+HQ +CVET EQN   ERKHQHLL+V RAL+ QA+LP   W YA+LHA +L+
Sbjct: 535  SFYASKGIMHQTTCVETPEQNGIAERKHQHLLNVTRALLFQANLPSNFWCYALLHATYLV 594

Query: 134  NRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
            N +P+  L++ SPY+ LHG LP +++LRVFGCLCY ST
Sbjct: 595  NCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYAST 632


>KYP62795.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 301

 Score =  257 bits (657), Expect = 8e-82
 Identities = 128/282 (45%), Positives = 185/282 (65%), Gaps = 5/282 (1%)
 Frame = -3

Query: 836 IGSGKLKHGLYHLDCGGGKVVPV---VSHVNATV--DSSYTIPNSAIWHFRFGHASLAKI 672
           IGS  ++ GLY L       +PV      +N+T+       IP   +WHFR GH S  ++
Sbjct: 3   IGSVDVRDGLYQL-------IPVHLQPHSINSTIIHPKCNVIPID-LWHFRLGHLSSERM 54

Query: 671 DMLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHG 492
            ++ + +  ++ NK+ VC+ CH A+QR+LPF +SN+ A   F L+H+D+WGP S  S++G
Sbjct: 55  HIMQQQYSCLNNNKNFVCNTCHYAKQRKLPFPLSNSHATQPFALIHMDIWGPYSTLSMNG 114

Query: 491 YRFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSD 312
           +R+FLTIVDDH+RY W  L+  K E +  +  F N+VENQF   VK I +DNG EF + +
Sbjct: 115 HRYFLTIVDDHTRYTWVYLMCNKSETRTHITNFINLVENQFDTHVKIICTDNGNEFFMHE 174

Query: 311 VCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLIN 132
           +   +GIIHQ SC+ET +QN  VERKHQHLL+V RAL+  ++LP   WS+A+LHA +LIN
Sbjct: 175 LFHLKGIIHQTSCIETPQQNGIVERKHQHLLNVTRALLFHSNLPDCFWSFALLHATYLIN 234

Query: 131 RMPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGR 6
            +P+  L ++SP++ LHGV   +  ++VFGCLCY +T  S R
Sbjct: 235 CIPTPFLKNTSPFEKLHGVQCDIAMIKVFGCLCYITTITSQR 276


>KYP68601.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 549

 Score =  263 bits (672), Expect = 5e-81
 Identities = 118/246 (47%), Positives = 172/246 (69%)
 Frame = -3

Query: 758 VNATVDSSYTIPNSAIWHFRFGHASLAKIDMLSKNFPAIHVNKSLVCDICHLARQRRLPF 579
           +N+ +    T+P   +WHFR GH S+  +  + K+FP I  +   VCD CHLA+Q +LPF
Sbjct: 73  INSIIAKKPTVPFFDLWHFRLGHPSILVLQNICKHFPFIKFDSMKVCDYCHLAKQSKLPF 132

Query: 578 VVSNNRAENCFDLMHLDVWGPCSLPSIHGYRFFLTIVDDHSRYIWTVLLKGKFEVKGKVI 399
               +++   FDL+H+D+WGP ++ SI G+++FLTIVDD +R+ W  L+K K E +  V 
Sbjct: 133 PPGIHKSSAPFDLIHIDIWGPLAISSIQGHKYFLTIVDDFTRHTWLFLMKSKHETRILVK 192

Query: 398 EFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLEQNARVERKHQHLL 219
            F  +V+ QF++++K +R+DNG EF++S + ++ GIIHQ SCVET +QNA VERKH+H+L
Sbjct: 193 NFITLVQTQFNKRIKILRTDNGLEFSMSSIYQDLGIIHQTSCVETPQQNAVVERKHKHIL 252

Query: 218 SVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHGVLPYLNNLRVFGC 39
           +V R+L+  + LPK  WS+A+ HAV  INR+PS VLN  SP+QLL+   P LN+LR FG 
Sbjct: 253 NVTRSLLFHSKLPKSFWSFAVNHAVFFINRLPSPVLNQLSPFQLLYNTKPNLNDLRFFGS 312

Query: 38  LCYTST 21
           LC+ ST
Sbjct: 313 LCFAST 318


>AJY78067.1 putative polyprotein [Glycine max]
          Length = 886

 Score =  267 bits (683), Expect = 9e-80
 Identities = 127/281 (45%), Positives = 185/281 (65%), Gaps = 2/281 (0%)
 Frame = -3

Query: 842  RKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYT--IPNSAIWHFRFGHASLAKID 669
            + IG G+ + GLY+L     +      ++++   S+    IP +AIWHFR GH S ++I 
Sbjct: 486  KMIGLGESRDGLYYLTQTNKECASSNYNISSIFSSANNVHIPENAIWHFRLGHLSSSRIA 545

Query: 668  MLSKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGY 489
            +L   FP I  + S VCDICH A+ R+LPFV S ++A  CFDL+H D+WGP S+ S+H +
Sbjct: 546  LLHSQFPFIVNDSSSVCDICHFAKHRKLPFVHSYHKAIKCFDLIHFDIWGPISIKSVHNH 605

Query: 488  RFFLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDV 309
             +FLT VDDHSRY W  L+K K E +  V  F + ++ Q++  VK+IR+DNG EF + D 
Sbjct: 606  AYFLTAVDDHSRYTWITLMKNKSEARLHVQNFIHFIKTQYNHSVKSIRTDNGPEFLMPDF 665

Query: 308  CRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINR 129
               +GI+HQ  CV++ +QN RVERKHQ +L++ RAL++Q++LPK  W YA+ HAV+++NR
Sbjct: 666  YASKGILHQTLCVDSPQQNGRVERKHQQILNIGRALLVQSNLPKSFWCYAVSHAVYIMNR 725

Query: 128  MPSVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTSTNCSGR 6
            +P+  L + SPY LL+   P  + L+VFG L + ST  S R
Sbjct: 726  VPAPNLQNKSPYTLLYNTAPDFDTLKVFGSLVFASTLQSHR 766


>KYP61332.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 622

 Score =  261 bits (667), Expect = 2e-79
 Identities = 122/274 (44%), Positives = 179/274 (65%), Gaps = 1/274 (0%)
 Frame = -3

Query: 839 KIGSGKLKHGLYHLDCGGGKVVPVVSHVNATV-DSSYTIPNSAIWHFRFGHASLAKIDML 663
           KIG+  +  GLY +      +  +   + +TV +   +I +  +WHFR GH    K+  +
Sbjct: 148 KIGTVDVNVGLYTMT-----IAAIQPSICSTVCNPECSIQSIDLWHFRMGHLPYEKLHSM 202

Query: 662 SKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGYRF 483
            + +P ++ NK   C+ CH A+Q++LPF +S++     FDL+H+D+WGPCS  S+HG+R+
Sbjct: 203 KQYYPCLYSNKHFTCNTCHYAKQKKLPFPLSHSHTSKSFDLLHIDIWGPCSKISLHGHRY 262

Query: 482 FLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCR 303
           FLTIVDDH+R+ W  L+K K EV+  V  F   VENQF  +VK IR+DNG EF+++    
Sbjct: 263 FLTIVDDHTRFTWVFLMKTKAEVRNCVTNFIAYVENQFETQVKVIRTDNGVEFSMNKYFE 322

Query: 302 ERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMP 123
            +GIIHQ +C+ET EQN  VERKHQHLL+V RAL+ Q++LP   W +A++HA ++IN + 
Sbjct: 323 SKGIIHQTTCIETPEQNGIVERKHQHLLNVTRALLFQSALPPSFWCFALMHATYIINCLT 382

Query: 122 SVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
           +  L   SP++ L+G    +  LRVFGCLCY ST
Sbjct: 383 TPFLQHISPFEKLYGKPCDITTLRVFGCLCYVST 416


>KYP64431.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 812

 Score =  264 bits (674), Expect = 6e-79
 Identities = 124/274 (45%), Positives = 183/274 (66%)
 Frame = -3

Query: 842 RKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSAIWHFRFGHASLAKIDML 663
           + IG   +++ LY L       VP    +N+ +  + T+P   +WHFR GH S+  +  +
Sbjct: 105 KMIGRADVQNCLYVLSQPTKPQVPNQHIINSIIAKNPTVPFFDLWHFRLGHPSILVLQNI 164

Query: 662 SKNFPAIHVNKSLVCDICHLARQRRLPFVVSNNRAENCFDLMHLDVWGPCSLPSIHGYRF 483
            K+F  I  +   VCD CHLA+Q +LPF    +++   FDL+H+D+WGP ++ SI G+++
Sbjct: 165 CKHFLFIKFDSMKVCDYCHLAKQSKLPFPPGIHKSSAPFDLIHIDIWGPLAISSIQGHKY 224

Query: 482 FLTIVDDHSRYIWTVLLKGKFEVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCR 303
           FLTIVDD +R+ W  L+K K E +  V  F  +V+ QF++++K +R+DNG EF++S + +
Sbjct: 225 FLTIVDDFTRHTWLFLMKSKHETRILVKNFITLVQTQFNKRIKILRTDNGLEFSMSSIYQ 284

Query: 302 ERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMP 123
           + GIIHQ SCVET +QNA VERKH+H+L+V R+L+  + LPK  WS+A+ HAV  INR+P
Sbjct: 285 DLGIIHQTSCVETPQQNAVVERKHKHILNVTRSLLFHSKLPKSFWSFAVNHAVFFINRLP 344

Query: 122 SVVLNSSSPYQLLHGVLPYLNNLRVFGCLCYTST 21
           S VLN  SP+QLL+   P LN+LR FG LC+ ST
Sbjct: 345 SPVLNQLSPFQLLYNTKPNLNDLRFFGSLCFAST 378