BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza28_contig00040814
         (306 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EKS34570.1 hypothetical protein HMPREF9695_04480 [Afipia broomea...   193   7e-62
WP_011995933.1 MULTISPECIES: conjugal transfer protein TraD [Rhi...   179   6e-57
WP_011474918.1 conjugal transfer protein TraD [Rhodopseudomonas ...   132   2e-38
WP_072819670.1 conjugal transfer protein TraD [Bradyrhizobium er...   132   3e-38
WP_024340649.1 MULTISPECIES: conjugal transfer protein TraD [Bra...   130   1e-37
WP_037153589.1 conjugal transfer protein TraD [Rhizobium sp. YS-...   128   1e-36
WP_028347568.1 conjugal transfer protein TraD [Bradyrhizobium el...   128   1e-36
WP_054308816.1 conjugal transfer protein TraD [Mesorhizobium sp....   127   2e-36
WP_014891368.1 conjugal transfer protein TraD [Methylocystis sp....   127   2e-36
WP_050742841.1 MULTISPECIES: conjugal transfer protein TraD [Shi...   126   7e-36
WP_062315159.1 conjugal transfer protein TraD [Bradyrhizobium sp...   125   1e-35
WP_008966124.1 conjugal transfer protein TraD [Bradyrhizobium sp...   125   1e-35
WP_013167443.1 conjugal transfer protein TraD [Starkeya novella]...   125   2e-35
WP_011504328.1 conjugal transfer protein TraD [Rhodopseudomonas ...   124   4e-35
WP_012040775.1 MULTISPECIES: conjugal transfer protein TraD [Bra...   123   7e-35
WP_004128125.1 conjugal transfer TraD [Rhizobium freirei] ENN845...   123   8e-35
WP_076527903.1 conjugal transfer protein TraD [Paracoccus saliph...   123   1e-34
WP_041007382.1 conjugal transfer protein TraD [Mesorhizobium plu...   122   1e-34
WP_065726906.1 conjugal transfer protein TraD [Bradyrhizobium ic...   122   1e-34
WP_044407429.1 conjugal transfer protein TraD [Rhodopseudomonas ...   122   1e-34

>EKS34570.1 hypothetical protein HMPREF9695_04480 [Afipia broomeae ATCC 49717]
          Length = 130

 Score =  193 bits (490), Expect = 7e-62
 Identities = 94/95 (98%), Positives = 94/95 (98%)
 Frame = +1

Query: 1   AARARHDMRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDH 180
           AARARHDMRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDH
Sbjct: 36  AARARHDMRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDH 95

Query: 181 GEQASMLWAEKGKEAFAAQRKEETPTVAQGHHGRA 285
           GEQA MLWAEKGKEAFAAQRKEETPTVAQGHHGRA
Sbjct: 96  GEQARMLWAEKGKEAFAAQRKEETPTVAQGHHGRA 130


>WP_011995933.1 MULTISPECIES: conjugal transfer protein TraD [Rhizobiales]
           ABS65528.1 Conjugal transfer TraD family protein
           [Xanthobacter autotrophicus Py2] ABS67896.1 Conjugal
           transfer TraD family protein [Xanthobacter autotrophicus
           Py2]
          Length = 88

 Score =  179 bits (454), Expect = 6e-57
 Identities = 87/88 (98%), Positives = 87/88 (98%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQA ML
Sbjct: 1   MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQARML 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQGHHGRA 285
           WAEKGKEAFAAQRKEETPTVAQGHHGRA
Sbjct: 61  WAEKGKEAFAAQRKEETPTVAQGHHGRA 88


>WP_011474918.1 conjugal transfer protein TraD [Rhodopseudomonas palustris]
           ABD90040.1 Conjugal transfer TraD [Rhodopseudomonas
           palustris BisB18]
          Length = 89

 Score =  132 bits (333), Expect = 2e-38
 Identities = 62/82 (75%), Positives = 70/82 (85%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGL+ KAGIV+LTG+DRA IYGALLWMADKLQSD GE A  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLIAKAGIVELTGDDRATIYGALLWMADKLQSDQGEHAREL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQ 267
           WA KGK+AFA +R  + PT++Q
Sbjct: 61  WAAKGKQAFAVERATDAPTISQ 82


>WP_072819670.1 conjugal transfer protein TraD [Bradyrhizobium erythrophlei]
           SHN78262.1 Conjugal transfer protein TraD
           [Bradyrhizobium erythrophlei]
          Length = 89

 Score =  132 bits (331), Expect = 3e-38
 Identities = 63/82 (76%), Positives = 70/82 (85%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAG+VDLTG+DRA+IYGALLWMADKL+S+  EQA  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGVVDLTGDDRAIIYGALLWMADKLKSNQAEQARAL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQ 267
           WA KGK AFA +R    PT+AQ
Sbjct: 61  WAAKGKGAFAVERATNAPTIAQ 82


>WP_024340649.1 MULTISPECIES: conjugal transfer protein TraD [Bradyrhizobium]
           KQT20424.1 conjugal transfer protein TraD
           [Bradyrhizobium sp. Leaf396]
          Length = 89

 Score =  130 bits (327), Expect = 1e-37
 Identities = 62/82 (75%), Positives = 71/82 (86%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKA IVDLTG+DRA+I+GALLWMAD+L+S+ GEQA  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKARIVDLTGDDRAIIFGALLWMADRLKSNQGEQARAL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQ 267
           WA KGKEAFA +R  + PT+ Q
Sbjct: 61  WAAKGKEAFAVERATDAPTILQ 82


>WP_037153589.1 conjugal transfer protein TraD [Rhizobium sp. YS-1r] KGD96679.1
           conjugal transfer protein TraD [Rhizobium sp. YS-1r]
          Length = 88

 Score =  128 bits (321), Expect = 1e-36
 Identities = 61/88 (69%), Positives = 73/88 (82%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAGIV+LTG+DRA+IYGA+LWMA+KL+S+ GE A  +
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGIVELTGDDRAVIYGAMLWMAEKLKSEQGEHARGV 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQGHHGRA 285
           W + GK A   ++KE  PTVAQG + RA
Sbjct: 61  WTKLGKIALEVEQKEAPPTVAQGQYDRA 88


>WP_028347568.1 conjugal transfer protein TraD [Bradyrhizobium elkanii]
          Length = 89

 Score =  128 bits (321), Expect = 1e-36
 Identities = 65/85 (76%), Positives = 69/85 (81%), Gaps = 3/85 (3%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAG+VDLTGNDRAMIYGALLWMADKLQS  GEQA  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGVVDLTGNDRAMIYGALLWMADKLQSGQGEQARAL 60

Query: 202 WAEKGKEAFAAQ---RKEETPTVAQ 267
           W+ KGK+AF A     KE   TV +
Sbjct: 61  WSAKGKQAFEADPATHKETDRTVPE 85


>WP_054308816.1 conjugal transfer protein TraD [Mesorhizobium sp. 1M-11]
          Length = 88

 Score =  127 bits (320), Expect = 2e-36
 Identities = 62/82 (75%), Positives = 68/82 (82%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAGIVDLTG+DRA+IYGALLW ADKL+SD  E+A  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRAVIYGALLWAADKLKSDEREKALAL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQ 267
           W  KGK+AF A+R    PT AQ
Sbjct: 61  WTAKGKQAFEAERASTNPTTAQ 82


>WP_014891368.1 conjugal transfer protein TraD [Methylocystis sp. SC2] CCJ07339.1
           Conjugal transfer TraD family protein [Methylocystis sp.
           SC2]
          Length = 93

 Score =  127 bits (320), Expect = 2e-36
 Identities = 63/75 (84%), Positives = 65/75 (86%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MRAWQVERRKRTRHLIELGGLVVKAGIVDLTG+DRA I GALLWMADKLQSD GE A  L
Sbjct: 1   MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRATILGALLWMADKLQSDQGEHARAL 60

Query: 202 WAEKGKEAFAAQRKE 246
           WA KGK AF  +RKE
Sbjct: 61  WAAKGKRAFEIERKE 75


>WP_050742841.1 MULTISPECIES: conjugal transfer protein TraD [Shinella] KNY18058.1
           conjugal transfer protein TraD [Shinella sp. SUS2]
           KOC77253.1 conjugal transfer protein TraD [Shinella sp.
           GWS1]
          Length = 90

 Score =  126 bits (316), Expect = 7e-36
 Identities = 60/73 (82%), Positives = 67/73 (91%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR+WQVERRKRTRHLIELGGLVVKAGIVDLTG+DRAMIYGA++WMADKLQS+  E+A  L
Sbjct: 1   MRSWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRAMIYGAMIWMADKLQSEDSERARAL 60

Query: 202 WAEKGKEAFAAQR 240
           WA KGKEAF A+R
Sbjct: 61  WAGKGKEAFEAER 73


>WP_062315159.1 conjugal transfer protein TraD [Bradyrhizobium sp. CCH10-C7]
          Length = 88

 Score =  125 bits (314), Expect = 1e-35
 Identities = 60/88 (68%), Positives = 69/88 (78%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAG+V+LTG+DRA IYGA++WMA+KLQ +  EQA  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGVVELTGDDRATIYGAMIWMAEKLQGEDREQALAL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQGHHGRA 285
           WA KGK+ F A+R    PT AQ  H  A
Sbjct: 61  WAAKGKQRFEAERDGMNPTAAQDRHDGA 88


>WP_008966124.1 conjugal transfer protein TraD [Bradyrhizobium sp. STM 3809]
           CCE03582.1 Conjugal transfer protein traD
           [Bradyrhizobium sp. STM 3809]
          Length = 88

 Score =  125 bits (314), Expect = 1e-35
 Identities = 61/79 (77%), Positives = 65/79 (82%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAGIVDLTG+DRAMIYGAL WMADKL+SD G  A  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRAMIYGALCWMADKLRSDQGRHARKL 60

Query: 202 WAEKGKEAFAAQRKEETPT 258
           WA KGK+AF A  +   PT
Sbjct: 61  WAAKGKQAFEADPETHGPT 79


>WP_013167443.1 conjugal transfer protein TraD [Starkeya novella] ADH89939.1
           Conjugal transfer TraD family protein [Starkeya novella
           DSM 506]
          Length = 89

 Score =  125 bits (313), Expect = 2e-35
 Identities = 62/76 (81%), Positives = 66/76 (86%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAGIVDLTG+DRAMIYGALLWMADKLQSD   +A  L
Sbjct: 1   MRDWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRAMIYGALLWMADKLQSDERAKALAL 60

Query: 202 WAEKGKEAFAAQRKEE 249
           WA KGK+AF A+R  E
Sbjct: 61  WAAKGKQAFEAERHGE 76


>WP_011504328.1 conjugal transfer protein TraD [Rhodopseudomonas palustris]
           ABE41167.1 Conjugal transfer TraD [Rhodopseudomonas
           palustris BisB5]
          Length = 89

 Score =  124 bits (311), Expect = 4e-35
 Identities = 58/82 (70%), Positives = 71/82 (86%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MRAWQVERRKRTRHLIELGGLVVKA +V+LTG+DRA+I GALLWM +KL+S+ GEQA  L
Sbjct: 1   MRAWQVERRKRTRHLIELGGLVVKARVVELTGDDRAIILGALLWMTEKLKSNQGEQARAL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQ 267
           WA KG+EAFA +R  + PT+++
Sbjct: 61  WAAKGREAFALERATDAPTISR 82


>WP_012040775.1 MULTISPECIES: conjugal transfer protein TraD [Bradyrhizobiaceae]
           ABQ32723.1 Conjugal transfer protein traD
           [Bradyrhizobium sp. BTAi1] CEJ12902.1 Conjugal transfer
           protein TraD [bacterium YEK0313]
          Length = 72

 Score =  123 bits (308), Expect = 7e-35
 Identities = 59/69 (85%), Positives = 62/69 (89%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQ+ERRKRTRHLIELGGLVVKAGIVDLTG+DRAMIYGALLWMADKLQSD GE A  L
Sbjct: 1   MRTWQLERRKRTRHLIELGGLVVKAGIVDLTGDDRAMIYGALLWMADKLQSDQGEHARTL 60

Query: 202 WAEKGKEAF 228
           W  KGK+AF
Sbjct: 61  WNAKGKQAF 69


>WP_004128125.1 conjugal transfer TraD [Rhizobium freirei] ENN84544.1 conjugal
           transfer TraD [Rhizobium freirei PRF 81]
          Length = 81

 Score =  123 bits (308), Expect = 8e-35
 Identities = 59/73 (80%), Positives = 65/73 (89%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLV KA IVDLTG+DRA+IYG +LWMADKL+S+ GE+A  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVAKARIVDLTGDDRAVIYGVMLWMADKLKSEDGERARQL 60

Query: 202 WAEKGKEAFAAQR 240
           WA KGKEAFAAQR
Sbjct: 61  WAGKGKEAFAAQR 73


>WP_076527903.1 conjugal transfer protein TraD [Paracoccus saliphilus] SIT09272.1
           Conjugal transfer protein TraD [Paracoccus saliphilus]
          Length = 88

 Score =  123 bits (308), Expect = 1e-34
 Identities = 58/82 (70%), Positives = 70/82 (85%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR+WQVERRKRTRHLIELGGLVVKAGIVDLTG+DRAMI GAL+WMA+KL+S+ GE+A  L
Sbjct: 1   MRSWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRAMILGALIWMAEKLKSEDGERAREL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQ 267
           W+  GKE F A+R  + PT ++
Sbjct: 61  WSGMGKEGFEAERTPDAPTTSR 82


>WP_041007382.1 conjugal transfer protein TraD [Mesorhizobium plurifarium]
           CDX58801.1 Conjugal transfer protein traD [Mesorhizobium
           plurifarium]
          Length = 71

 Score =  122 bits (306), Expect = 1e-34
 Identities = 59/69 (85%), Positives = 62/69 (89%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLV+KAGIVDLTG+DRA I GALLWMADKL+SD GEQA  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVIKAGIVDLTGDDRATILGALLWMADKLKSDQGEQARKL 60

Query: 202 WAEKGKEAF 228
           WA KGKEAF
Sbjct: 61  WAAKGKEAF 69


>WP_065726906.1 conjugal transfer protein TraD [Bradyrhizobium icense] ANV99611.1
           conjugal transfer protein TraD [Bradyrhizobium icense]
          Length = 88

 Score =  122 bits (307), Expect = 1e-34
 Identities = 60/71 (84%), Positives = 63/71 (88%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAGIVDLTG+DRAMIYGALLWMA+KL+SD  EQA  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRAMIYGALLWMAEKLKSDRHEQARAL 60

Query: 202 WAEKGKEAFAA 234
           WA KGK AF A
Sbjct: 61  WAAKGKRAFEA 71


>WP_044407429.1 conjugal transfer protein TraD [Rhodopseudomonas palustris]
           KIZ46654.1 conjugal transfer protein TraD
           [Rhodopseudomonas palustris]
          Length = 88

 Score =  122 bits (307), Expect = 1e-34
 Identities = 62/88 (70%), Positives = 68/88 (77%)
 Frame = +1

Query: 22  MRAWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIYGALLWMADKLQSDHGEQASML 201
           MR WQVERRKRTRHLIELGGLVVKAGIVDLTG+DR MIYGALLWMA+KL+S+  E+A  L
Sbjct: 1   MRTWQVERRKRTRHLIELGGLVVKAGIVDLTGDDRTMIYGALLWMAEKLKSEDAERAREL 60

Query: 202 WAEKGKEAFAAQRKEETPTVAQGHHGRA 285
           WA KGKEAF  +  E T    Q    RA
Sbjct: 61  WAGKGKEAFTEEHPEGTNDRTQPPQDRA 88