BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza28_contig00033798
         (595 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GAU12283.1 hypothetical protein TSUD_141910 [Trifolium subterran...    82   5e-26
GAU49954.1 hypothetical protein TSUD_180180 [Trifolium subterran...    87   2e-25
GAU10400.1 hypothetical protein TSUD_423410, partial [Trifolium ...   108   3e-25
GAU50297.1 hypothetical protein TSUD_288310 [Trifolium subterran...    77   2e-24
GAU40444.1 hypothetical protein TSUD_397630 [Trifolium subterran...    85   2e-22
GAU23316.1 hypothetical protein TSUD_237700 [Trifolium subterran...    92   5e-22
GAU41508.1 hypothetical protein TSUD_302460 [Trifolium subterran...    82   6e-22
GAU33259.1 hypothetical protein TSUD_333820 [Trifolium subterran...    97   8e-21
ABO80459.1 RNA-directed DNA polymerase (Reverse transcriptase); ...    80   4e-20
GAU18899.1 hypothetical protein TSUD_228890 [Trifolium subterran...    81   5e-20
GAU12548.1 hypothetical protein TSUD_182620 [Trifolium subterran...    71   2e-19
KYP35629.1 Putative ribonuclease H protein At1g65750 family [Caj...    69   4e-19
KYP74203.1 Putative ribonuclease H protein At1g65750 family [Caj...    69   4e-19
GAU20604.1 hypothetical protein TSUD_33400 [Trifolium subterraneum]    71   6e-19
ABE80156.1 Ribonuclease H [Medicago truncatula]                        71   2e-18
GAU34195.1 hypothetical protein TSUD_162960 [Trifolium subterran...    65   2e-17
GAU16646.1 hypothetical protein TSUD_325960 [Trifolium subterran...    65   2e-17
GAU26057.1 hypothetical protein TSUD_225190 [Trifolium subterran...    62   5e-17
GAU10666.1 hypothetical protein TSUD_425710, partial [Trifolium ...    66   9e-17
GAU35137.1 hypothetical protein TSUD_394630 [Trifolium subterran...    87   2e-16

>GAU12283.1 hypothetical protein TSUD_141910 [Trifolium subterraneum]
          Length = 1049

 Score = 82.0 bits (201), Expect(2) = 5e-26
 Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 33/160 (20%)
 Frame = +1

Query: 22   LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRII- 198
            LHCLRD   + +IW  +GF   +FF   D   W+R      S+ +F+A +WWIWR+R   
Sbjct: 785  LHCLRDCDFAQSIWKSIGFSNLNFFQGDDPYVWIRNGLHCSSMFLFMATIWWIWRARNAL 844

Query: 199  --------------------------------GAFGRTIAWHDSREDVIVFNVDGSF*AD 282
                                             +  + + W+      ++ NVDGS    
Sbjct: 845  CLNSESILFYSLKLRIMDYALLIENCHSNHHDTSTSKLVKWNALGGTGMILNVDGSS-LG 903

Query: 283  ETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAIY 402
                 GFGG+  N DGAW++GF G+LG  + L AE  AIY
Sbjct: 904  NPGISGFGGLIHNADGAWVLGFFGNLGVNNILHAELRAIY 943



 Score = 63.5 bits (153), Expect(2) = 5e-26
 Identities = 27/65 (41%), Positives = 41/65 (63%)
 Frame = +2

Query: 401  IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
            I+KGL LAW   ++ L CYSDS++A++LI       H Y  ++ NI+ +L  DW++ + H
Sbjct: 942  IYKGLLLAWDLNIKDLWCYSDSEMAIKLISESVDQWHHYAAILNNIQDILRRDWQVLILH 1001

Query: 581  TLRAG 595
            T R G
Sbjct: 1002 TFREG 1006


>GAU49954.1 hypothetical protein TSUD_180180 [Trifolium subterraneum]
          Length = 968

 Score = 87.4 bits (215), Expect(2) = 2e-25
 Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 35/162 (21%)
 Frame = +1

Query: 22   LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSR--- 192
            LHC+RD   S ++WH +GF   +FF  +D   WL+   +     +F AGVWW WR R   
Sbjct: 702  LHCIRDCDFSRSLWHHIGFTNPNFFSNMDVYDWLKMGATGTQSLIFSAGVWWSWRHRNLM 761

Query: 193  -------------------------------IIGAFGRTIAWHDSREDVIVFNVDGSF*A 279
                                            +G+  R I W ++     + NVDGS   
Sbjct: 762  SLNNETWTLSRLSFNIRSMVETFKNCCTPVSNVGSVDRFIKWKNNNFSCTILNVDGSC-L 820

Query: 280  DETHRVGFGGVRRNGDGAWLVGFAGSL-GGADCLCAEFMAIY 402
                R GFGG+ RN  G +L GF+G + G +D L AE  AIY
Sbjct: 821  GSPARAGFGGIIRNTFGYYLAGFSGYIQGSSDILYAELYAIY 862



 Score = 55.8 bits (133), Expect(2) = 2e-25
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = +2

Query: 401  IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
            I+KGL LA + G+  L CYSDS   + LI  P    H + VLI++I+ L+SL+  +SL H
Sbjct: 861  IYKGLLLAKNMGIDELVCYSDSLHCINLIKGPQVKYHIHAVLIQDIKELISLN-NVSLCH 919

Query: 581  TLRAG 595
            TLR G
Sbjct: 920  TLREG 924


>GAU10400.1 hypothetical protein TSUD_423410, partial [Trifolium subterraneum]
          Length = 284

 Score =  108 bits (270), Expect = 3e-25
 Identities = 63/167 (37%), Positives = 79/167 (47%), Gaps = 34/167 (20%)
 Frame = +1

Query: 4   SNSVQLLHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIW 183
           S    +LHCLRD   S  IW+ LGF  +SFF   D   WLR  +   +   FLAG+WW W
Sbjct: 12  SGEETILHCLRDCPISRRIWNSLGFQNSSFFSCSDLELWLRNNSIGLNAPTFLAGLWWNW 71

Query: 184 RSRIIGAFG----------------------------------RTIAWHDSREDVIVFNV 261
           R+R I   G                                  R I+WH  + D +V NV
Sbjct: 72  RARNIFCVGNASIHSFKVVAEVSKLVALIVFCFPARVHTDTPRRWISWHPCKTDCVVLNV 131

Query: 262 DGSF*ADETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAIY 402
           DGS   D   R GFGG+ R GDG W+ GF+G LG  + + AE MA+Y
Sbjct: 132 DGSCLGDPG-RAGFGGLFRKGDGEWIRGFSGYLGVTNIMLAELMAVY 177



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 36/99 (36%), Positives = 53/99 (53%)
 Frame = +2

Query: 299 DSEEFVGTEMELGLSDLLEALEELIVYVLSLWLYIWKGLSLAWHRGVRHLKCYSDSQLAL 478
           D E   G    LG+++++  L EL+         ++ GL +A   G   L CYSDS+  L
Sbjct: 152 DGEWIRGFSGYLGVTNIM--LAELMA--------VYHGLKIAREAGYNRLFCYSDSKTVL 201

Query: 479 RLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTHTLRAG 595
            L+     S H Y  +I NI+ LL L+W++SL H+LR G
Sbjct: 202 DLLSKERNSFHCYAAIIANIQDLLVLEWDVSLKHSLREG 240


>GAU50297.1 hypothetical protein TSUD_288310 [Trifolium subterraneum]
          Length = 545

 Score = 77.4 bits (189), Expect(2) = 2e-24
 Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
 Frame = +1

Query: 22  LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRI-- 195
           LHCLR+       W  +GF   +FF   +   WLR      S  +F+A VWWIW +R   
Sbjct: 281 LHCLRNCEFIKRFWKAIGFLGQTFFQGDNLNDWLRNSIDGPSSFLFMAAVWWIWCARNQL 340

Query: 196 -------------------------------IGAFGRTIAWHDSREDVIVFNVDGSF*AD 282
                                          I +    + W+      ++ NVDGS   +
Sbjct: 341 CMDNEAISYFTLRTNTENLAQLLRMCFIKQNISSTATMVRWNAHGGIGMILNVDGSSIGN 400

Query: 283 ETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAIY 402
                GFGG+ RN DGAW+ GFAG++G  + L AE +AIY
Sbjct: 401 PGIS-GFGGLIRNSDGAWVHGFAGNIGHLNILQAELLAIY 439



 Score = 62.8 bits (151), Expect(2) = 2e-24
 Identities = 30/67 (44%), Positives = 41/67 (61%)
 Frame = +2

Query: 395 LYIWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSL 574
           L I+ GL LAW   ++ L CYSDS+ AL+LI++     H Y  +I NI+  LS +W + L
Sbjct: 436 LAIYHGLVLAWELDIKDLCCYSDSKTALKLIYDHVNEWHQYAAIIYNIKDFLSRNWRVRL 495

Query: 575 THTLRAG 595
            H LR G
Sbjct: 496 VHMLREG 502


>GAU40444.1 hypothetical protein TSUD_397630 [Trifolium subterraneum]
          Length = 275

 Score = 85.1 bits (209), Expect(2) = 2e-22
 Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
 Frame = +1

Query: 4   SNSVQLLHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIW 183
           S+    LHC+RD   S  IWH +GF+  +FF   DA  W +  ++      F AGVWW W
Sbjct: 3   SHKETFLHCVRDCDFSRNIWHHIGFNDPTFFSFTDAREWRKVGSTGSQAYTFSAGVWWAW 62

Query: 184 RSR---------------------IIGAF-------------GRTIAWHDSREDVIVFNV 261
           R R                     ++  F              R I W++     ++ NV
Sbjct: 63  RHRNWMCLNNDSWSLNRLSFNIQSMVDIFTSSFSSNSDGTAVSRLIKWNNDNFSCVILNV 122

Query: 262 DGSF*ADETHRVGFGGVRRNGDGAWLVGFAGSL-GGADCLCAEFMAIY 402
           DGS   D   R G+GG+ RN  G +L GF+G +   +D L AE  AIY
Sbjct: 123 DGSC-LDSPVRAGYGGIIRNDSGFYLSGFSGFIRESSDILLAELYAIY 169



 Score = 48.1 bits (113), Expect(2) = 2e-22
 Identities = 27/65 (41%), Positives = 37/65 (56%)
 Frame = +2

Query: 401 IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
           I++GL+LA    +  L CYSDS L + LI  P    H Y VLI++I  L+     ++L H
Sbjct: 168 IYQGLTLAKDLAIDELVCYSDSLLCINLIKGPIVKYHVYAVLIQDINELICQS-NVTLCH 226

Query: 581 TLRAG 595
           T R G
Sbjct: 227 TFREG 231


>GAU23316.1 hypothetical protein TSUD_237700 [Trifolium subterraneum]
          Length = 418

 Score = 91.7 bits (226), Expect(2) = 5e-22
 Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
 Frame = +1

Query: 22  LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRIIG 201
           LHC+RD   S +IWH +GF    FF  +DA  WL+  ++     +F AGVWW WR+  + 
Sbjct: 179 LHCVRDCDFSISIWHHIGFDNPDFFSSMDAHDWLKWGSTGSKAFIFSAGVWWSWRNHNLM 238

Query: 202 AFG-------RTIAWHDSREDVIVFNVDGSF*ADETHRVGFGGVRRNGDGAWLVGFAGSL 360
                     R + W+++    ++ NVD S       R GFGG+ RN  G +L GF+G +
Sbjct: 239 CLNNETWTVDRVVKWNNNNFSGVILNVDESC-LGSPIRSGFGGIFRNDSGFYLSGFSGFI 297

Query: 361 -GGADCLCAEFMAIY 402
            G +D + AE  AIY
Sbjct: 298 QGSSDIMLAEPYAIY 312



 Score = 40.4 bits (93), Expect(2) = 5e-22
 Identities = 26/65 (40%), Positives = 35/65 (53%)
 Frame = +2

Query: 401 IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
           I+ GLSLA    +    CYSDS   + LI       H + VLI++I+  LS +  +SL H
Sbjct: 311 IYHGLSLAEDMEINEFVCYSDSLHRINLITGLTLKYHVHAVLIQDIKEFLS-NRNVSLCH 369

Query: 581 TLRAG 595
           TL  G
Sbjct: 370 TLGEG 374


>GAU41508.1 hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score = 82.0 bits (201), Expect(2) = 6e-22
 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
 Frame = +1

Query: 22   LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRII- 198
            LHC+RD   S  IWH +GF+  +FF   DA  WL+  ++      F A VWW WR R + 
Sbjct: 809  LHCVRDCDFSRNIWHHIGFNDPTFFSFTDAREWLKVGSTGSQAYTFSASVWWAWRHRNLM 868

Query: 199  ---------------------------------GAFGRTIAWHDSREDVIVFNVDGSF*A 279
                                              +  R I W++     ++ NVDGS   
Sbjct: 869  CLNNESWSLNRLSFNIHSMVDIFTSSFSSNSDGTSVSRLIKWNNDNFSCVILNVDGSCLG 928

Query: 280  DETHRVGFGGVRRNGDGAWLVGFAGSL-GGADCLCAEFMAIY 402
                R G+GG+ RN  G +L GF+G +   +D L AE  AIY
Sbjct: 929  SPV-RAGYGGIIRNDSGFYLSGFSGFIRESSDILLAELYAIY 969



 Score = 49.7 bits (117), Expect(2) = 6e-22
 Identities = 28/65 (43%), Positives = 39/65 (60%)
 Frame = +2

Query: 401  IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
            I++GL+LA    +  L CYSDS L + LI  P    H Y VLI++I+ L+S    ++L H
Sbjct: 968  IYQGLTLAKDLVIDELVCYSDSLLCINLIKGPIVKYHVYAVLIQDIKELISQS-NVTLCH 1026

Query: 581  TLRAG 595
            T R G
Sbjct: 1027 TFREG 1031


>GAU33259.1 hypothetical protein TSUD_333820 [Trifolium subterraneum]
          Length = 284

 Score = 96.7 bits (239), Expect = 8e-21
 Identities = 60/161 (37%), Positives = 74/161 (45%), Gaps = 28/161 (17%)
 Frame = +1

Query: 4   SNSVQLLHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIW 183
           S    +LHCLRD   S  IW+ LGF  +SFF   D   WLR  +   +   FLAG+WW W
Sbjct: 18  SGEETILHCLRDCPISRRIWNSLGFQNSSFFSCSDLELWLRNNSIGLNAPTFLAGLWWNW 77

Query: 184 RSRIIGAFG----------------------------RTIAWHDSREDVIVFNVDGSF*A 279
           R+R I   G                            RT      + D +V NVDGS   
Sbjct: 78  RARNICCVGNASIHSFKVVAEVSKLVALIVSCFPAWVRTDTPRVCKTDCVVLNVDGSCLG 137

Query: 280 DETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAIY 402
           D   R GFGG+ R GDG W+ G +G LG  +   AE MA+Y
Sbjct: 138 D-PGRAGFGGLFRKGDGEWIRGSSGYLGVTNITLAELMAVY 177



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/99 (35%), Positives = 53/99 (53%)
 Frame = +2

Query: 299 DSEEFVGTEMELGLSDLLEALEELIVYVLSLWLYIWKGLSLAWHRGVRHLKCYSDSQLAL 478
           D E   G+   LG++++   L EL+         ++ GL +A   G   L CYSDS+  L
Sbjct: 152 DGEWIRGSSGYLGVTNI--TLAELMA--------VYHGLKIAREAGYNRLFCYSDSKTVL 201

Query: 479 RLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTHTLRAG 595
            L+     S H Y  +I NI+ LL L+W++SL H++R G
Sbjct: 202 DLLSKERNSFHCYAAIIANIQDLLVLEWDVSLKHSVREG 240


>ABO80459.1 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score = 80.1 bits (196), Expect(2) = 4e-20
 Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 35/163 (21%)
 Frame = +1

Query: 19   LLHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSR-- 192
            + HC+RD   S  IWH +GF    FF   D   W +         +F AG+WWIWRSR  
Sbjct: 602  VFHCIRDCPFSKIIWHHIGFSEPYFFAVTDIEIWCKSGLIGSKAILFAAGLWWIWRSRNA 661

Query: 193  -----------------------IIGAF---------GRTIAWHDSREDVIVFNVDGSF* 276
                                   I   F          R + W++S  +  + NVDGS  
Sbjct: 662  RCMSEESMLLQRLAANITYFVDDINSCFFQPLPVMVSDRYVKWNNSNFNCTILNVDGSC- 720

Query: 277  ADETHRVGFGGVRRNGDGAWLVGFAGSL-GGADCLCAEFMAIY 402
                 R GFGG+ RN  G +L GF G L   +D L AE  AIY
Sbjct: 721  IGSPIRAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAELTAIY 763



 Score = 45.4 bits (106), Expect(2) = 4e-20
 Identities = 26/65 (40%), Positives = 36/65 (55%)
 Frame = +2

Query: 401 IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
           I+ G++ A   G+  +  YSDS L++ LI       H +  LI++IR  LSL    SL H
Sbjct: 762 IYDGINTAIDMGITDMAVYSDSLLSINLITTTSSKFHIHAALIQDIRDKLSLR-NFSLNH 820

Query: 581 TLRAG 595
           TLR G
Sbjct: 821 TLREG 825


>GAU18899.1 hypothetical protein TSUD_228890 [Trifolium subterraneum]
          Length = 1098

 Score = 80.9 bits (198), Expect(2) = 5e-20
 Identities = 52/161 (32%), Positives = 68/161 (42%), Gaps = 34/161 (21%)
 Frame = +1

Query: 22   LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRIIG 201
            LHC+RD + S  +W  LGF  +SFF    A  WL+         +FLAGVWWIWR R   
Sbjct: 833  LHCVRDCIHSKTVWDQLGFTNSSFFDSTMAHEWLKHSYFSPRRLLFLAGVWWIWRHRNNM 892

Query: 202  AFG---------------------------------RTIAWHDSREDVIVFNVDGSF*AD 282
              G                                 R I W+ +    +V N DGS  + 
Sbjct: 893  CLGDETWSAVRLSCNIYSMVEDLKNCFPSSTTEETSRCIKWNFTNFTGVVINTDGSC-SG 951

Query: 283  ETHRVGFGGVRRNGDGAWLVGFAGSL-GGADCLCAEFMAIY 402
               R GFG + RN DG ++ G +G +   +D L AE   IY
Sbjct: 952  TPARTGFGCIIRNNDGRYITGASGHITNSSDILLAELSGIY 992



 Score = 44.3 bits (103), Expect(2) = 5e-20
 Identities = 24/65 (36%), Positives = 34/65 (52%)
 Frame = +2

Query: 401  IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
            I+ GL LA   G+    CY+DS ++  LI       H Y VLI+NI+  +     + + H
Sbjct: 991  IYHGLQLAISLGITDFICYTDSLISCNLIQGVSSPYHIYGVLIQNIKDSMQQS-NIIICH 1049

Query: 581  TLRAG 595
            TLR G
Sbjct: 1050 TLREG 1054


>GAU12548.1 hypothetical protein TSUD_182620 [Trifolium subterraneum]
          Length = 236

 Score = 70.9 bits (172), Expect(2) = 2e-19
 Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 33/143 (23%)
 Frame = +1

Query: 73  GFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRII------------------ 198
           GF    FF   DA SWLR + S  ++ +F+AG+WWIWR R +                  
Sbjct: 46  GFSDHHFFQGYDAYSWLRYDLSSSALLLFIAGIWWIWRVRNVLCLDSEMISFCPLKLRIM 105

Query: 199 ---------------GAFGRTIAWHDSREDVIVFNVDGSF*ADETHRVGFGGVRRNGDGA 333
                              + + W+      ++ NVDGS   + +    F G+ RN DGA
Sbjct: 106 DYALLLKNCYFNTHETLITKLVKWNALGGTGMILNVDGSSIGNPSIS-SFRGLIRNADGA 164

Query: 334 WLVGFAGSLGGADCLCAEFMAIY 402
           W+ GF G+LG  + L AE M IY
Sbjct: 165 WVRGFFGNLGVTNILHAELMPIY 187



 Score = 52.4 bits (124), Expect(2) = 2e-19
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = +2

Query: 401 IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRG 544
           I+KGL LAW   ++ + CYSDS++A++LI +P  + H Y V++ NI+G
Sbjct: 186 IYKGLLLAWELNMKDMWCYSDSKMAIKLITDPIDAWHHYAVILNNIKG 233


>KYP35629.1 Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 1411

 Score = 68.6 bits (166), Expect(2) = 4e-19
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
 Frame = +1

Query: 19   LLHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRII 198
            +LHC+RD   S A+W   GF   +FF   +  +W++   +    + FLA +WW WR R +
Sbjct: 1144 VLHCMRDCKYSKALWLQFGFSNINFFNH-EVRTWIQRGVNSAQCSKFLAVMWWTWRWRNM 1202

Query: 199  GAFG----------------------------------RTIAWHDSREDVIVFNVDGSF* 276
               G                                  + + W      ++  NVDGS+ 
Sbjct: 1203 DVLGGEEWNMEQVRYKINSTLCDWNNAFAGEQVHSHEVQEVTWCKPTPPMVKVNVDGSYK 1262

Query: 277  ADETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAI 399
            + +   VGFGGV R+ +G W  GF+G       L AE + +
Sbjct: 1263 SGDL-CVGFGGVIRDHEGTWKTGFSGRHQTTSVLLAELLGL 1302



 Score = 53.5 bits (127), Expect(2) = 4e-19
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = +2

Query: 410  GLSLAWHRGVRHLKCYSDSQLALRLI---HNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
            GL LAW  G R ++C +DS  A RL+   H P    H + V+I+ IR LL  DW ++L+H
Sbjct: 1305 GLLLAWDAGFREVQCETDSLEAFRLVSMAHVP--KFHNFGVVIQQIRELLRRDWRVALSH 1362

Query: 581  TLRAG 595
             LR G
Sbjct: 1363 ILRQG 1367


>KYP74203.1 Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 611

 Score = 68.6 bits (166), Expect(2) = 4e-19
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
 Frame = +1

Query: 19  LLHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRII 198
           +LHC+RD   S A+W   GF   +FF   +  +W++   +    + FLA +WW WR R +
Sbjct: 344 VLHCMRDCKYSKALWLQFGFSNINFFNH-EVRTWIQRGVNSAQCSKFLAVMWWTWRWRNM 402

Query: 199 GAFG----------------------------------RTIAWHDSREDVIVFNVDGSF* 276
              G                                  + + W      ++  NVDGS+ 
Sbjct: 403 DVLGGEEWNMEQVRYKINSTLCDWNNAFAGEQVHSHEVQEVTWCKPTPPMVKVNVDGSYK 462

Query: 277 ADETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAI 399
           + +   VGFGGV R+ +G W  GF+G       L AE + +
Sbjct: 463 SGDL-CVGFGGVIRDHEGTWKTGFSGRHQTTSVLLAELLGL 502



 Score = 53.5 bits (127), Expect(2) = 4e-19
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = +2

Query: 410 GLSLAWHRGVRHLKCYSDSQLALRLI---HNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
           GL LAW  G R ++C +DS  A RL+   H P    H + V+I+ IR LL  DW ++L+H
Sbjct: 505 GLLLAWDAGFREVQCETDSLEAFRLVSMAHVP--KFHNFGVVIQQIRELLRRDWRVALSH 562

Query: 581 TLRAG 595
            LR G
Sbjct: 563 ILRQG 567


>GAU20604.1 hypothetical protein TSUD_33400 [Trifolium subterraneum]
          Length = 1174

 Score = 71.2 bits (173), Expect(2) = 6e-19
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 35/162 (21%)
 Frame = +1

Query: 22   LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRIIG 201
            LHC+RD + S  +W  LGF +  FF       WL+    +    +F+AGVWW+WR R + 
Sbjct: 908  LHCVRDCIFSRPVWIRLGFTSRIFFDITSVHDWLKSAYFRPHRFVFMAGVWWLWRHRNLM 967

Query: 202  AF----------------------------------GRTIAWHDSREDVIVFNVDGSF*A 279
                                                 RT+ W+ +     + N+DGS  +
Sbjct: 968  CLSNETWSFVRISCNIYSMGDTLKTCFPSSSPEETSNRTVKWNSTDFTGFILNMDGSC-S 1026

Query: 280  DETHRVGFGGVRRNGDGAWLVGFAGS-LGGADCLCAEFMAIY 402
                R GFG + RN  G+++ G +G  +G +D L AE   I+
Sbjct: 1027 GTPIRCGFGCIIRNNVGSYIAGASGHIIGSSDILLAELSGIF 1068



 Score = 50.4 bits (119), Expect(2) = 6e-19
 Identities = 27/65 (41%), Positives = 37/65 (56%)
 Frame = +2

Query: 401  IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
            I+ GL LA   G+  L CY+DS L+  LI  P    H Y VLI+NI+  +     +++ H
Sbjct: 1067 IFHGLKLASSLGITDLICYTDSLLSCNLIQGPYSHYHIYGVLIQNIKDYMQQS-NINICH 1125

Query: 581  TLRAG 595
            TLR G
Sbjct: 1126 TLREG 1130


>ABE80156.1 Ribonuclease H [Medicago truncatula]
          Length = 438

 Score = 71.2 bits (173), Expect(2) = 2e-18
 Identities = 48/162 (29%), Positives = 66/162 (40%), Gaps = 35/162 (21%)
 Frame = +1

Query: 22  LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSR--- 192
           LHC+RD   S +IW  +GF    FF    A  W +   S    ++F  G+WW WR R   
Sbjct: 172 LHCVRDCHFSRSIWQKIGFTGNDFFTATSAHDWFKIGMSSSLPDIFFGGLWWAWRHRNLM 231

Query: 193 ----------------------IIGAF---------GRTIAWHDSREDVIVFNVDGSF*A 279
                                 I  AF          R + W++      + NVDGS   
Sbjct: 232 CLNNETMSLFRLCNNIVSAATYIKSAFDSEENVNHSDRFVKWNNRNHHDHILNVDGSC-L 290

Query: 280 DETHRVGFGGVRRNGDGAWLVGFAGSL-GGADCLCAEFMAIY 402
               R G+GG+ RN  G ++ GF+G +    D L AE  AI+
Sbjct: 291 GTPSRTGYGGILRNSAGLFISGFSGFIPNSTDILQAELTAIH 332



 Score = 48.9 bits (115), Expect(2) = 2e-18
 Identities = 28/65 (43%), Positives = 38/65 (58%)
 Frame = +2

Query: 401 IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSLTH 580
           I + L +     +  + CYSDS LA+ LI N     H Y VLI+NI+ LLS+   ++L H
Sbjct: 331 IHQSLHMVIDSNMNDVMCYSDSLLAVNLIMNDTPRYHTYAVLIQNIKDLLSVR-NITLHH 389

Query: 581 TLRAG 595
           TLR G
Sbjct: 390 TLREG 394


>GAU34195.1 hypothetical protein TSUD_162960 [Trifolium subterraneum]
          Length = 168

 Score = 64.7 bits (156), Expect(2) = 2e-17
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = +2

Query: 395 LYIWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSL 574
           L I+ GL LAW   ++ L CYSDS+ AL+LI++     H Y  +I NI+  LS +W + L
Sbjct: 59  LAIYHGLVLAWELDIKDLCCYSDSKTALKLIYDHVNEWHHYAAIIYNIKDFLSRNWRVRL 118

Query: 575 THTLRAG 595
            HTLR G
Sbjct: 119 VHTLREG 125



 Score = 51.6 bits (122), Expect(2) = 2e-17
 Identities = 27/62 (43%), Positives = 39/62 (62%)
 Frame = +1

Query: 217 IAWHDSREDVIVFNVDGSF*ADETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMA 396
           + W+      ++ NVDGS   +     GFGG+ RN DGAW+ GFAG++G ++ L AE +A
Sbjct: 2   VRWNAHGGIGMILNVDGSSIGNPGIS-GFGGLIRNSDGAWVHGFAGNIGHSNILHAELLA 60

Query: 397 IY 402
           IY
Sbjct: 61  IY 62


>GAU16646.1 hypothetical protein TSUD_325960 [Trifolium subterraneum]
          Length = 157

 Score = 64.7 bits (156), Expect(2) = 2e-17
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = +2

Query: 395 LYIWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSL 574
           L I+ GL LAW   ++ L CYSDS+ AL+LI++     H Y  +I NI+  LS +W + L
Sbjct: 48  LAIYHGLVLAWELDIKDLCCYSDSKTALKLIYDHVNEWHHYAAIIYNIKDFLSRNWRVRL 107

Query: 575 THTLRAG 595
            HTLR G
Sbjct: 108 VHTLREG 114



 Score = 51.6 bits (122), Expect(2) = 2e-17
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = +1

Query: 247 IVFNVDGSF*ADETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAIY 402
           ++ NVDGS   +     GFGG+ RN DGAW+ GFAG++G ++ L AE +AIY
Sbjct: 1   MILNVDGSSIGNPGIS-GFGGLIRNSDGAWIHGFAGNIGHSNILHAELLAIY 51


>GAU26057.1 hypothetical protein TSUD_225190 [Trifolium subterraneum]
          Length = 536

 Score = 62.0 bits (149), Expect(2) = 5e-17
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 33/153 (21%)
 Frame = +1

Query: 43  VASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSRII-------- 198
           +A+S   +G      +FF   D   W+R      S+ +F+A +WWIWR+R          
Sbjct: 334 IATSPKAYGNRLANLNFFQGDDPYVWIRNGLRCFSMFLFMATIWWIWRTRNALCLNSDPI 393

Query: 199 -------------------------GAFGRTIAWHDSREDVIVFNVDGSF*ADETHRVGF 303
                                     +  + + W+      ++ NVDGS   +     GF
Sbjct: 394 PFYSLKLRIMDYALLIENCHSNHHDTSTSKLVKWNVLGGTSMILNVDGSSLGNPGIS-GF 452

Query: 304 GGVRRNGDGAWLVGFAGSLGGADCLCAEFMAIY 402
           GG+ RN DGAW+ GF G+LG  + L A+ MAIY
Sbjct: 453 GGLIRNADGAWVHGFFGNLGVNNILHAKLMAIY 485



 Score = 53.1 bits (126), Expect(2) = 5e-17
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +2

Query: 401 IWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLD 559
           I+KGL LAW   ++ L CYSDS++A++LI  P    H Y  +  NI+ +L  D
Sbjct: 484 IYKGLLLAWELNIKDLWCYSDSEMAIKLISEPVDQWHHYTAIFNNIKDILRRD 536


>GAU10666.1 hypothetical protein TSUD_425710, partial [Trifolium subterraneum]
          Length = 157

 Score = 65.9 bits (159), Expect(2) = 9e-17
 Identities = 31/67 (46%), Positives = 43/67 (64%)
 Frame = +2

Query: 395 LYIWKGLSLAWHRGVRHLKCYSDSQLALRLIHNPPGSLHAYDVLIENIRGLLSLDWELSL 574
           L I+ GL LAW   ++ L CYSDS+ AL+LI++     H Y  +I NI+ +LS +W + L
Sbjct: 59  LAIYHGLVLAWELDIKDLYCYSDSKTALKLIYDHVNEWHHYAAIIYNIKDILSRNWRVRL 118

Query: 575 THTLRAG 595
            HTLR G
Sbjct: 119 VHTLREG 125



 Score = 48.5 bits (114), Expect(2) = 9e-17
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +1

Query: 217 IAWHDSREDVIVFNVDGSF*ADETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMA 396
           + W+      ++ NVDGS   +     GFGG+ RN D AW+ GFAG++G ++ L AE +A
Sbjct: 2   VRWNAHGGIRMILNVDGSSIGNPGIS-GFGGLIRNSDRAWVHGFAGNIGHSNILHAELLA 60

Query: 397 IY 402
           IY
Sbjct: 61  IY 62


>GAU35137.1 hypothetical protein TSUD_394630 [Trifolium subterraneum]
          Length = 547

 Score = 87.0 bits (214), Expect = 2e-16
 Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 33/160 (20%)
 Frame = +1

Query: 22  LHCLRDYVASSAIWHGLGFHTTSFFFQVDAISWLREETSKDSVNMFLAGVWWIWRSR--- 192
           LHCLRD      IW  +GF   +FF + D+  WLR   S  S+ +FLA VWWIWR+R   
Sbjct: 339 LHCLRDCDFVQIIWKSIGFSDLNFFQEDDSYDWLRNGLSFPSMFIFLAAVWWIWRARNAL 398

Query: 193 -----IIGAFG-------------------------RTIAWHDSREDVIVFNVDGSF*AD 282
                +I  F                          + + W+    D+I+ NV+GS    
Sbjct: 399 CLNSELIPLFALKLRIMDYALLLRNCQSNLHETSIPKLVKWNAGGTDMIL-NVEGSS-IG 456

Query: 283 ETHRVGFGGVRRNGDGAWLVGFAGSLGGADCLCAEFMAIY 402
                GFGG+ RN DGA + GF G+LG  + L AE MAIY
Sbjct: 457 NPGIYGFGGLIRNADGACVHGFFGNLGVTNILHAELMAIY 496