BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza28_contig00028261
         (590 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ABS65511.1 RNA polymerase, sigma-24 subunit, ECF subfamily [Xant...   149   1e-42
WP_006023164.1 MULTISPECIES: DNA-directed RNA polymerase sigma-7...   132   5e-36
WP_013168041.1 DNA-directed RNA polymerase sigma-70 factor [Star...    84   6e-17
WP_068185559.1 RNA polymerase subunit sigma-70 [Rhizobiales bact...    82   2e-16
WP_054142779.1 RNA polymerase subunit sigma-70 [Bosea sp. AAP35]...    81   8e-16
OCX32564.1 RNA polymerase subunit sigma-70 [Bradyrhizobium sp. U...    78   1e-14
SDG74968.1 RNA polymerase sigma-70 factor, ECF subfamily [Bosea ...    77   2e-14
KFC74795.1 Sigma-70 family RNA polymerase sigma factor [Bosea sp...    77   4e-14
WP_067993481.1 MULTISPECIES: RNA polymerase subunit sigma-70 [un...    75   1e-13
EKE78752.1 ECF subfamily RNA polymerase sigma-24 factor [Oceanib...    75   1e-13
WP_051091250.1 RNA polymerase subunit sigma-70 [Methylopila sp. ...    75   1e-13
WP_076442861.1 RNA polymerase subunit sigma-70 [Bosea sp. TND4EK4]     75   1e-13
WP_056801178.1 RNA polymerase subunit sigma-70 [Bosea sp. Root38...    75   1e-13
WP_069881258.1 RNA polymerase subunit sigma-70 [Bosea sp. BIWAKO...    75   2e-13
WP_012606052.1 RNA polymerase subunit sigma-24 [Methylobacterium...    74   3e-13
WP_061969125.1 RNA polymerase subunit sigma-70 [Bosea sp. Root67...    73   8e-13
WP_052513397.1 RNA polymerase subunit sigma-70 [Bosea sp. LC85]        73   9e-13
WP_040706093.1 DNA-directed RNA polymerase sigma-70 factor [Ocea...    72   1e-12
WP_022726742.1 RNA polymerase sigma 70 [Fodinicurvata sediminis]       72   1e-12
WP_026988807.1 hypothetical protein [Fodinicurvata fenggangensis]      72   1e-12

>ABS65511.1 RNA polymerase, sigma-24 subunit, ECF subfamily [Xanthobacter
           autotrophicus Py2] ABS67915.1 RNA polymerase, sigma-24
           subunit, ECF subfamily [Xanthobacter autotrophicus Py2]
          Length = 172

 Score =  149 bits (377), Expect = 1e-42
 Identities = 72/73 (98%), Positives = 73/73 (100%)
 Frame = -1

Query: 221 LLRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFK 42
           +LRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFK
Sbjct: 1   MLRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFK 60

Query: 41  VIRNAWIDDFRRA 3
           VIRNAWIDDFRRA
Sbjct: 61  VIRNAWIDDFRRA 73


>WP_006023164.1 MULTISPECIES: DNA-directed RNA polymerase sigma-70 factor
           [Rhizobiales] EKS34553.1 sigma-70 family RNA polymerase
           sigma factor [Afipia broomeae ATCC 49717]
          Length = 163

 Score =  132 bits (333), Expect = 5e-36
 Identities = 63/64 (98%), Positives = 64/64 (100%)
 Frame = -1

Query: 194 LKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDD 15
           +KNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDD
Sbjct: 1   MKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDD 60

Query: 14  FRRA 3
           FRRA
Sbjct: 61  FRRA 64


>WP_013168041.1 DNA-directed RNA polymerase sigma-70 factor [Starkeya novella]
           AAF64399.1 RNA polymerase sigma factor SigE [Starkeya
           novella DSM 506] ADH90540.1 RNA polymerase, sigma-24
           subunit, ECF subfamily [Starkeya novella DSM 506]
          Length = 172

 Score = 84.0 bits (206), Expect = 6e-17
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = -1

Query: 209 IEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRN 30
           IE  L ++W  L+ YAL LTG RE+ASDL+Q+C VKAL+S S P D ++ R ++F ++RN
Sbjct: 5   IEAALKQDWRRLFSYALHLTGSREAASDLLQSCVVKALSSRSLPADIVSVRAWIFTILRN 64

Query: 29  AWIDDFRR 6
           AWID+FRR
Sbjct: 65  AWIDEFRR 72


>WP_068185559.1 RNA polymerase subunit sigma-70 [Rhizobiales bacterium CCH3-A5]
          Length = 172

 Score = 82.4 bits (202), Expect = 2e-16
 Identities = 39/71 (54%), Positives = 52/71 (73%)
 Frame = -1

Query: 215 RRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVI 36
           + IE  L  NW  L+GYA+RL+G R++A DL+Q+CA KALAS + P +   AR +LFKV+
Sbjct: 3   KTIELALRDNWQRLFGYAVRLSGSRDAAGDLLQSCASKALASPAIPTEPSQARAWLFKVL 62

Query: 35  RNAWIDDFRRA 3
           RN WIDD RR+
Sbjct: 63  RNCWIDDHRRS 73


>WP_054142779.1 RNA polymerase subunit sigma-70 [Bosea sp. AAP35] KPF69768.1 RNA
           polymerase subunit sigma-70 [Bosea sp. AAP35]
          Length = 171

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 37/65 (56%), Positives = 49/65 (75%)
 Frame = -1

Query: 197 LLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWID 18
           L +NW  L+GYA RL+G R++A DL+Q+CA KALAS + P +   AR +LFKV+RN WID
Sbjct: 3   LRENWQRLFGYAFRLSGSRDAAGDLLQSCASKALASRAMPIEPSQARAWLFKVLRNCWID 62

Query: 17  DFRRA 3
           D RR+
Sbjct: 63  DHRRS 67


>OCX32564.1 RNA polymerase subunit sigma-70 [Bradyrhizobium sp. UASWS1016]
          Length = 175

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 39/70 (55%), Positives = 50/70 (71%)
 Frame = -1

Query: 215 RRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVI 36
           R +E  L  NWS L+GYAL LTGD ++A DL+Q  A+ ALAS + P D  AAR +LFK++
Sbjct: 6   RTVEAALELNWSRLFGYALSLTGDTDNARDLIQQSALNALASKNAPDDPEAARAWLFKIV 65

Query: 35  RNAWIDDFRR 6
           RNA ID +RR
Sbjct: 66  RNASIDQYRR 75


>SDG74968.1 RNA polymerase sigma-70 factor, ECF subfamily [Bosea robiniae]
          Length = 173

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/69 (55%), Positives = 51/69 (73%)
 Frame = -1

Query: 209 IEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRN 30
           IE  L +NW  L+ YALRL+G+R+ A+DL+Q+CA KALA ASPP D    R +LF ++RN
Sbjct: 5   IEHALRQNWERLFSYALRLSGNRDGAADLLQSCATKALA-ASPPEDGERIRAWLFAILRN 63

Query: 29  AWIDDFRRA 3
            WID+ RR+
Sbjct: 64  IWIDEHRRS 72


>KFC74795.1 Sigma-70 family RNA polymerase sigma factor [Bosea sp. LC85]
          Length = 184

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 39/76 (51%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
 Frame = -1

Query: 230 EQRLLRRI-EQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARI 54
           E+ +LR + E+ L +NW  L+ YALRL+G R++A+DL+Q+CA+KALA ASPP ++   R 
Sbjct: 8   EELILRIVVERALRRNWDRLFFYALRLSGSRDAAADLLQSCAMKALA-ASPPEEDERVRP 66

Query: 53  YLFKVIRNAWIDDFRR 6
           +LF ++RN WID+ RR
Sbjct: 67  WLFTILRNLWIDEHRR 82


>WP_067993481.1 MULTISPECIES: RNA polymerase subunit sigma-70 [unclassified
           Rhizobiales (miscellaneous)]
          Length = 176

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 37/69 (53%), Positives = 52/69 (75%)
 Frame = -1

Query: 209 IEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRN 30
           +E  L +NW  L+GYALRL+GDR++A+DL+Q+CA+KALAS + P D    R +LF ++RN
Sbjct: 10  VETALRQNWQRLFGYALRLSGDRDAAADLLQSCAMKALASDTVP-DASGIRSWLFAILRN 68

Query: 29  AWIDDFRRA 3
            + DD RRA
Sbjct: 69  GFFDDRRRA 77


>EKE78752.1 ECF subfamily RNA polymerase sigma-24 factor [Oceanibaculum indicum
           P24]
          Length = 176

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 37/70 (52%), Positives = 49/70 (70%)
 Frame = -1

Query: 212 RIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIR 33
           ++EQ L +    L+GYAL LTGD E A DLVQ CA++AL +A  P DE A R +LFK++R
Sbjct: 10  QLEQGLRRYLPRLFGYALSLTGDEEKAQDLVQECAMRALDAARVPADEAAFRAWLFKILR 69

Query: 32  NAWIDDFRRA 3
           N WID  R++
Sbjct: 70  NLWIDRQRKS 79


>WP_051091250.1 RNA polymerase subunit sigma-70 [Methylopila sp. M107]
          Length = 163

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 34/62 (54%), Positives = 48/62 (77%)
 Frame = -1

Query: 191 KNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDDF 12
           ++W  L+GYAL L GDR++A DL+Q+CA+KAL +A+ P +  AAR +LF ++RNAWID  
Sbjct: 3   ESWGRLYGYALSLCGDRDAARDLLQSCAMKALDNAAQPREAHAARAWLFGIMRNAWIDGL 62

Query: 11  RR 6
           RR
Sbjct: 63  RR 64


>WP_076442861.1 RNA polymerase subunit sigma-70 [Bosea sp. TND4EK4]
          Length = 171

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 37/69 (53%), Positives = 52/69 (75%)
 Frame = -1

Query: 209 IEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRN 30
           +E  L +NW  L+GYALRL+G+R+SA+DL+Q+CA+KALAS + P D    R +LF ++RN
Sbjct: 5   VETALRQNWQRLFGYALRLSGNRDSAADLLQSCAMKALASETVP-DASGIRSWLFAILRN 63

Query: 29  AWIDDFRRA 3
            + DD RRA
Sbjct: 64  GFFDDRRRA 72


>WP_056801178.1 RNA polymerase subunit sigma-70 [Bosea sp. Root381] KRE09686.1 RNA
           polymerase subunit sigma-70 [Bosea sp. Root381]
          Length = 162

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 32/65 (49%), Positives = 50/65 (76%)
 Frame = -1

Query: 197 LLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWID 18
           + +NW  L+ YA RL+G R++A+DL+Q+CA+KAL S +PP +E   R +LF ++RN WID
Sbjct: 1   MCQNWERLFSYARRLSGSRDAAADLLQSCALKAL-SVAPPAEETRIRAWLFAILRNIWID 59

Query: 17  DFRRA 3
           ++RR+
Sbjct: 60  EYRRS 64


>WP_069881258.1 RNA polymerase subunit sigma-70 [Bosea sp. BIWAKO-01]
          Length = 173

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 36/68 (52%), Positives = 51/68 (75%)
 Frame = -1

Query: 209 IEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRN 30
           +E+ L +NW  L+ YALRL+G R++A+DL+Q+CA+KALA A P  DE   R +LF ++RN
Sbjct: 5   VERALRRNWDRLFFYALRLSGSRDAAADLLQSCAMKALAGAPPEEDE-RLRPWLFTILRN 63

Query: 29  AWIDDFRR 6
            WID+ RR
Sbjct: 64  LWIDEHRR 71


>WP_012606052.1 RNA polymerase subunit sigma-24 [Methylobacterium extorquens]
           ACK86148.1 RNA polymerase, sigma-24 subunit, ECF
           subfamily (plasmid) [Methylobacterium extorquens CM4]
          Length = 186

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 35/72 (48%), Positives = 51/72 (70%)
 Frame = -1

Query: 218 LRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKV 39
           +R I QHL++ W  L+ YAL LT + ++A DL+Q  A+KAL++ + P +  A R YLF++
Sbjct: 25  MRSIGQHLVEAWPRLFRYALTLTREPDAARDLMQQSALKALSTGATPSEPRAVRAYLFQI 84

Query: 38  IRNAWIDDFRRA 3
           +RNAWID  RRA
Sbjct: 85  VRNAWIDRIRRA 96


>WP_061969125.1 RNA polymerase subunit sigma-70 [Bosea sp. Root670] KRE03497.1 RNA
           polymerase subunit sigma-70 [Bosea sp. Root670]
          Length = 164

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = -1

Query: 191 KNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDDF 12
           +NW  L+ YALRL+G+R+ A+DL+Q+CA KALA ASPP +    R +LF ++RN WID+ 
Sbjct: 3   QNWERLFSYALRLSGNRDGAADLLQSCATKALA-ASPPEEGDRVRAWLFAILRNIWIDEH 61

Query: 11  RRA 3
           RR+
Sbjct: 62  RRS 64


>WP_052513397.1 RNA polymerase subunit sigma-70 [Bosea sp. LC85]
          Length = 165

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 34/62 (54%), Positives = 49/62 (79%)
 Frame = -1

Query: 191 KNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDDF 12
           +NW  L+ YALRL+G R++A+DL+Q+CA+KALA ASPP ++   R +LF ++RN WID+ 
Sbjct: 3   RNWDRLFFYALRLSGSRDAAADLLQSCAMKALA-ASPPEEDERVRPWLFTILRNLWIDEH 61

Query: 11  RR 6
           RR
Sbjct: 62  RR 63


>WP_040706093.1 DNA-directed RNA polymerase sigma-70 factor [Oceanibaculum indicum]
          Length = 158

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = -1

Query: 176 LWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDDFRRA 3
           L+GYAL LTGD E A DLVQ CA++AL +A  P DE A R +LFK++RN WID  R++
Sbjct: 4   LFGYALSLTGDEEKAQDLVQECAMRALDAARVPADEAAFRAWLFKILRNLWIDRQRKS 61


>WP_022726742.1 RNA polymerase sigma 70 [Fodinicurvata sediminis]
          Length = 165

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 37/69 (53%), Positives = 50/69 (72%)
 Frame = -1

Query: 212 RIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIR 33
           R+E++ ++    L+GYA  LTGDRE A DL Q CA++ALA+ S P +E A R +LF+V+R
Sbjct: 6   RLERYRVR----LFGYAFSLTGDREEADDLFQECALRALAAKSVPENEQACRAWLFRVLR 61

Query: 32  NAWIDDFRR 6
           NAWID  RR
Sbjct: 62  NAWIDRTRR 70


>WP_026988807.1 hypothetical protein [Fodinicurvata fenggangensis]
          Length = 171

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 37/69 (53%), Positives = 49/69 (71%)
 Frame = -1

Query: 212 RIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIR 33
           R+E++ L+    L+GYA  LTGDRE A DL Q CA++AL + S P +E A R +LF+V+R
Sbjct: 12  RLERYRLR----LFGYAFSLTGDREEADDLFQECALRALTAKSVPDNERACRAWLFRVLR 67

Query: 32  NAWIDDFRR 6
           NAWID  RR
Sbjct: 68  NAWIDRTRR 76