BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza28_contig00017863
         (1549 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_003516775.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   624   0.0  
XP_006573909.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   619   0.0  
XP_004511295.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   612   0.0  
BAU00859.1 hypothetical protein VIGAN_10249400 [Vigna angularis ...   610   0.0  
XP_017406706.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   609   0.0  
KYP45099.1 hypothetical protein KK1_033381 [Cajanus cajan]            607   0.0  
XP_014520097.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   604   0.0  
XP_013453291.1 RNA pseudouridine synthase [Medicago truncatula] ...   595   0.0  
XP_007157229.1 hypothetical protein PHAVU_002G053600g [Phaseolus...   589   0.0  
XP_015958450.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   573   0.0  
XP_016197034.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   567   0.0  
XP_019441369.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   554   0.0  
GAU29527.1 hypothetical protein TSUD_115490 [Trifolium subterran...   543   0.0  
GAV62308.1 PseudoU_synth_2 domain-containing protein [Cephalotus...   535   0.0  
XP_014633042.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   526   0.0  
XP_014633041.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   526   0.0  
XP_013453292.1 RNA pseudouridine synthase [Medicago truncatula] ...   526   0.0  
XP_010096290.1 RNA pseudourine synthase 4 [Morus notabilis] EXB6...   528   0.0  
XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   524   e-180
XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus t...   522   e-180

>XP_003516775.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Glycine max] KHN30421.1 RNA pseudourine synthase 4,
            mitochondrial [Glycine soja] KRH77957.1 hypothetical
            protein GLYMA_01G244300 [Glycine max]
          Length = 427

 Score =  624 bits (1610), Expect = 0.0
 Identities = 316/409 (77%), Positives = 349/409 (85%), Gaps = 1/409 (0%)
 Frame = +2

Query: 173  SVTRQ-SDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLR 349
            +VTR   DKWLTLPPV+A+ S+S+  NQL SST  TALKWV+RCCPHLP+ALVHKLFRLR
Sbjct: 22   AVTRPWEDKWLTLPPVSASSSASVELNQL-SSTPTTALKWVVRCCPHLPRALVHKLFRLR 80

Query: 350  RVRMLPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIRSL 529
            +VR+ PA + +Q QT KRV AKDTLN+GDRI LP SV+   TP     +T ++INFIR+L
Sbjct: 81   QVRIHPA-TVIQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIRTL 138

Query: 530  VIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILV 709
            VIYKDPAILVLNKPPG+PVQGG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGILV
Sbjct: 139  VIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILV 198

Query: 710  MGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVV 889
            MGRT TS  VLHSIFRE+TSRASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGKVV
Sbjct: 199  MGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVV 258

Query: 890  VDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVL 1069
            VDNG+SDRITIVDNSTL+SSQHAITEYRVI SSS GYTWLEL+PLTGRKHQLRVHCAEVL
Sbjct: 259  VDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVL 318

Query: 1070 GTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHL 1249
            GTPIVGDYKYGWQAHRKWGHFDL N              LPFGLNLNKGSISE HPRLHL
Sbjct: 319  GTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRLHL 377

Query: 1250 HCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            HCKQ+VLPNI QALQNVQSAS+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 378  HCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 426


>XP_006573909.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Glycine max] KRH77956.1 hypothetical protein
            GLYMA_01G244300 [Glycine max]
          Length = 429

 Score =  619 bits (1597), Expect = 0.0
 Identities = 316/411 (76%), Positives = 349/411 (84%), Gaps = 3/411 (0%)
 Frame = +2

Query: 173  SVTRQ-SDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLR 349
            +VTR   DKWLTLPPV+A+ S+S+  NQL SST  TALKWV+RCCPHLP+ALVHKLFRLR
Sbjct: 22   AVTRPWEDKWLTLPPVSASSSASVELNQL-SSTPTTALKWVVRCCPHLPRALVHKLFRLR 80

Query: 350  RVRMLPAASAVQDQTLKRV--VAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIR 523
            +VR+ PA + +Q QT KRV   AKDTLN+GDRI LP SV+   TP     +T ++INFIR
Sbjct: 81   QVRIHPA-TVIQQQTFKRVRVAAKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIR 138

Query: 524  SLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGI 703
            +LVIYKDPAILVLNKPPG+PVQGG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGI
Sbjct: 139  TLVIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGI 198

Query: 704  LVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGK 883
            LVMGRT TS  VLHSIFRE+TSRASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGK
Sbjct: 199  LVMGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGK 258

Query: 884  VVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAE 1063
            VVVDNG+SDRITIVDNSTL+SSQHAITEYRVI SSS GYTWLEL+PLTGRKHQLRVHCAE
Sbjct: 259  VVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAE 318

Query: 1064 VLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRL 1243
            VLGTPIVGDYKYGWQAHRKWGHFDL N              LPFGLNLNKGSISE HPRL
Sbjct: 319  VLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRL 377

Query: 1244 HLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            HLHCKQ+VLPNI QALQNVQSAS+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 378  HLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 428


>XP_004511295.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Cicer
            arietinum]
          Length = 458

 Score =  612 bits (1577), Expect = 0.0
 Identities = 311/418 (74%), Positives = 351/418 (83%), Gaps = 6/418 (1%)
 Frame = +2

Query: 164  CHFSVTRQSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFR 343
            CH S      KWLTLP V+ATV SS  +N++ SS+S TALKWV +CCP +PK LVHKLFR
Sbjct: 47   CHMSA--DDAKWLTLPAVSATVKSS--SNEVSSSSSTTALKWVTQCCPQIPKTLVHKLFR 102

Query: 344  LRRVRMLPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREM----PTPKLECRVTAKEI 511
            LR+VRMLP +  + D+ LKRV AKDTLNSGDRIFLP+SV++      TPK    +T K+I
Sbjct: 103  LRQVRMLPNSPLIADK-LKRVGAKDTLNSGDRIFLPNSVKQQHQHQQTPKQPLTLTPKQI 161

Query: 512  NFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRD 691
             F+RSLVIYKDPA +VLNKPPG+PVQGG+N+K SLD +AA+ LNY+ S+PPRLVHRLDRD
Sbjct: 162  KFMRSLVIYKDPATVVLNKPPGMPVQGGINIKWSLDALAASSLNYDYSQPPRLVHRLDRD 221

Query: 692  CSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTA 871
            CSGILVMGRTQTS  VLHSIFR++TSRASD   TEK+ILQRRYWALVIG PRRS GL+T+
Sbjct: 222  CSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDTEKRILQRRYWALVIGRPRRSGGLITS 281

Query: 872  PLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRV 1051
            PLGKVVVDNGKSDRITIV+NSTL+SSQHA+TEYRV+GSSS GYTWLELSPLTGRKHQLRV
Sbjct: 282  PLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRVLGSSSDGYTWLELSPLTGRKHQLRV 341

Query: 1052 HCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEK 1231
            HCAEVLGTPIVGDYKYGWQAH+KWGHFDL N              LPFGLNLNKGSIS+K
Sbjct: 342  HCAEVLGTPIVGDYKYGWQAHKKWGHFDLCN-LEDSTEELLKEETLPFGLNLNKGSISDK 400

Query: 1232 HPRLHLHCKQIVLPNIFQALQNVQ--SASNYDLSVVEALNLEADLPPYMRRSWDVTNS 1399
            HPRLHLHCKQI+LPNI QALQ+VQ  SASN DLSVVEAL LEA+LPPYM+RSWDVTNS
Sbjct: 401  HPRLHLHCKQIILPNISQALQDVQSLSASNCDLSVVEALKLEAELPPYMQRSWDVTNS 458


>BAU00859.1 hypothetical protein VIGAN_10249400 [Vigna angularis var. angularis]
          Length = 440

 Score =  610 bits (1574), Expect = 0.0
 Identities = 312/414 (75%), Positives = 344/414 (83%), Gaps = 9/414 (2%)
 Frame = +2

Query: 182  RQSDKWLTLPPVTATVSSSL------AANQLCSSTSPTALKWVLRCCPHLPKALVHKLFR 343
            ++ +KWLTLPPV A+ +  +        NQL SSTS TALKW++RCCP+LP +L+HKLFR
Sbjct: 28   QREEKWLTLPPVAASATVEVNGKRKGKGNQL-SSTSTTALKWIVRCCPNLPISLLHKLFR 86

Query: 344  LRRVRML-PAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTP--KLECRVTAKEIN 514
            LR+VR+L P    +Q QTLKRV AK TLN+GDRI LP SV++ PTP  K    +T ++IN
Sbjct: 87   LRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPLTPQQIN 146

Query: 515  FIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDC 694
            FIR+LVIYKDPAILVLNKPPG+PVQGG+N+K SLDVVAAACLNYE SEPPRLVHRLDRDC
Sbjct: 147  FIRTLVIYKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDC 206

Query: 695  SGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAP 874
            SGILVMGRTQTS  VLHSIFRE+TSRA D+ G EK+ILQRRYWALV+GCPRRS+GLVTA 
Sbjct: 207  SGILVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSKGLVTAS 266

Query: 875  LGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVH 1054
            LGKVVVDNGKS+RIT+VDNS  LSSQHAITEYRVI SSS GYTWLELSPLTGRKHQLRVH
Sbjct: 267  LGKVVVDNGKSERITVVDNSASLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVH 326

Query: 1055 CAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKH 1234
            CAEVLGTPIVGDYKYGWQAHRKWG FDLSN              LPFGLNLN GSISE H
Sbjct: 327  CAEVLGTPIVGDYKYGWQAHRKWGGFDLSN-VEDSCEELLKEETLPFGLNLNNGSISENH 385

Query: 1235 PRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            PRLHLHCKQIVLPNI QALQNVQS SN DLS VE L L ADLPPYM+RSWDVTN
Sbjct: 386  PRLHLHCKQIVLPNISQALQNVQSFSNCDLSQVEGLELVADLPPYMQRSWDVTN 439


>XP_017406706.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Vigna
            angularis] KOM26639.1 hypothetical protein
            LR48_Vigan303s006100 [Vigna angularis]
          Length = 440

 Score =  609 bits (1570), Expect = 0.0
 Identities = 312/414 (75%), Positives = 343/414 (82%), Gaps = 9/414 (2%)
 Frame = +2

Query: 182  RQSDKWLTLPPVTATVSSSL------AANQLCSSTSPTALKWVLRCCPHLPKALVHKLFR 343
            ++ +KWLTLPPV A+ +  +        NQL SSTS TALKW++RCCP+LP +L+HKLFR
Sbjct: 28   QREEKWLTLPPVAASATVEVNGKRKGKGNQL-SSTSTTALKWIVRCCPNLPISLLHKLFR 86

Query: 344  LRRVRML-PAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTP--KLECRVTAKEIN 514
            LR+VR+L P    +Q QTLKRV AK TLN+GDRI LP SV++ PTP  K    +T ++IN
Sbjct: 87   LRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPLTPQQIN 146

Query: 515  FIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDC 694
            FIR+LVIYKDPAILVLNKPPG PVQGG+N+K SLDVVAAACLNYE SEPPRLVHRLDRDC
Sbjct: 147  FIRTLVIYKDPAILVLNKPPGSPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDC 206

Query: 695  SGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAP 874
            SGILVMGRTQTS  VLHSIFRE+TSRA D+ G EK+ILQRRYWALV+GCPRRS+GLVTA 
Sbjct: 207  SGILVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSKGLVTAS 266

Query: 875  LGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVH 1054
            LGKVVVDNGKS+RIT+VDNS  LSSQHAITEYRVI SSS GYTWLELSPLTGRKHQLRVH
Sbjct: 267  LGKVVVDNGKSERITVVDNSASLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVH 326

Query: 1055 CAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKH 1234
            CAEVLGTPIVGDYKYGWQAHRKWG FDLSN              LPFGLNLN GSISE H
Sbjct: 327  CAEVLGTPIVGDYKYGWQAHRKWGGFDLSN-VEDSCEELLKEETLPFGLNLNNGSISENH 385

Query: 1235 PRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            PRLHLHCKQIVLPNI QALQNVQS SN DLS VE L L ADLPPYM+RSWDVTN
Sbjct: 386  PRLHLHCKQIVLPNISQALQNVQSFSNCDLSQVEGLELVADLPPYMQRSWDVTN 439


>KYP45099.1 hypothetical protein KK1_033381 [Cajanus cajan]
          Length = 403

 Score =  607 bits (1564), Expect = 0.0
 Identities = 299/383 (78%), Positives = 331/383 (86%)
 Frame = +2

Query: 248  NQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLRRVRMLPAASAVQDQTLKRVVAKDTLN 427
            NQ+ SST  TALKWV+RCCP+LP+ALVHKLFRLR+VR+L  +S     T KRV AKDTLN
Sbjct: 22   NQI-SSTPTTALKWVVRCCPNLPRALVHKLFRLRQVRILSPSSHSHHPTFKRVAAKDTLN 80

Query: 428  SGDRIFLPHSVREMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVK 607
            +GDRI LP SV++ PT K    +T+++INFIR+LVIYKDPAILVLNKPPG+PVQGG+N+K
Sbjct: 81   TGDRILLPQSVKQTPTHKHHSHLTSQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIK 140

Query: 608  RSLDVVAAACLNYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASDET 787
            RSLDVVAA+ LNYE SEPPRLVHRLDRDCSGILVMGRTQ SA +LHSIFRE+TSRA ++ 
Sbjct: 141  RSLDVVAASSLNYEYSEPPRLVHRLDRDCSGILVMGRTQASATLLHSIFREKTSRALNDI 200

Query: 788  GTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITE 967
            G EK+ILQR+YWALV+GCPRR +GLVTA LGKVVVDNG+SDRITIVDNST++SSQHAITE
Sbjct: 201  GKEKRILQRKYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTIMSSQHAITE 260

Query: 968  YRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNP 1147
            YRVI SSS GYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSN 
Sbjct: 261  YRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNV 320

Query: 1148 XXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLS 1327
                         LPFGLNL KGSISE HPRLHLHCKQIVLPNI QALQNVQSASN DLS
Sbjct: 321  DDSREEELLKEETLPFGLNLKKGSISENHPRLHLHCKQIVLPNISQALQNVQSASNCDLS 380

Query: 1328 VVEALNLEADLPPYMRRSWDVTN 1396
            +VE L L ADLPPYM+RSWDVTN
Sbjct: 381  LVEGLELAADLPPYMQRSWDVTN 403


>XP_014520097.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Vigna radiata
            var. radiata]
          Length = 440

 Score =  604 bits (1558), Expect = 0.0
 Identities = 312/420 (74%), Positives = 342/420 (81%), Gaps = 10/420 (2%)
 Frame = +2

Query: 167  HFSVTRQ-SDKWLTLPPVTATVSSSL------AANQLCSSTSPTALKWVLRCCPHLPKAL 325
            H S  RQ  +KWLTLPPV AT +  +        NQL SSTS TALKW++RCCP+LP +L
Sbjct: 22   HLSAGRQLEEKWLTLPPVAATATVEVNGKRKGKGNQL-SSTSTTALKWIVRCCPNLPISL 80

Query: 326  VHKLFRLRRVRML-PAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTP--KLECRV 496
            +HKLFRLR+VR+L P    +Q QTLKRV AK TLN+GDRI LP SV++ PTP  K    +
Sbjct: 81   LHKLFRLRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPL 140

Query: 497  TAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVH 676
            T ++INFIR  VI+KDPAILVLNKPPG+PVQGG+N+K SLD VAAACLNYE SEPPRLVH
Sbjct: 141  TPQQINFIRKFVIFKDPAILVLNKPPGMPVQGGINIKHSLDAVAAACLNYEYSEPPRLVH 200

Query: 677  RLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSR 856
            RLDRDCSG+LVMGRTQTS  VLHSIFRE+TSRA D+ G EK+ILQRRYWALV+GCPRRS+
Sbjct: 201  RLDRDCSGLLVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSK 260

Query: 857  GLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRK 1036
            GLVTA LGKVVVDNGKSDRIT+VDNS  LSSQHAITEYRVI SSS GYTWLELSPLTGRK
Sbjct: 261  GLVTASLGKVVVDNGKSDRITVVDNSASLSSQHAITEYRVIASSSQGYTWLELSPLTGRK 320

Query: 1037 HQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKG 1216
            HQLRVHCAEVLGTPIVGDYKYGWQAHR+WG FDLSN              LPFGLNLN G
Sbjct: 321  HQLRVHCAEVLGTPIVGDYKYGWQAHRQWGGFDLSN-VEDSCEELFKEETLPFGLNLNNG 379

Query: 1217 SISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            SISE HPRLHLHCKQIVLPNI QALQNVQS SN DLS VE L L ADLP YM+RSWDVTN
Sbjct: 380  SISENHPRLHLHCKQIVLPNISQALQNVQSFSNCDLSQVERLELVADLPLYMQRSWDVTN 439


>XP_013453291.1 RNA pseudouridine synthase [Medicago truncatula] KEH27321.1 RNA
            pseudouridine synthase [Medicago truncatula]
          Length = 430

 Score =  595 bits (1534), Expect = 0.0
 Identities = 307/419 (73%), Positives = 341/419 (81%), Gaps = 10/419 (2%)
 Frame = +2

Query: 173  SVTRQSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLRR 352
            S   +  KWLTLPPV+ TV++S       SSTS  ALKWV+RCCP LPK L+HKLFRL++
Sbjct: 21   SAVAEDGKWLTLPPVSTTVNTS------SSSTSTPALKWVIRCCPELPKTLIHKLFRLKQ 74

Query: 353  VRMLPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREM----PTP---KLECRVTAKEI 511
            VRMLP      D   KRV  KDTLNSGDRIFLP+SV++     PTP   +    +TAK+I
Sbjct: 75   VRMLPRQQ--DDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPLTLTAKQI 132

Query: 512  NFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRD 691
            NFIRSLVIYKDP ILVLNKPPG+PVQGG+N+K SLD VAA  LNY+ S+PPRLVHRLDRD
Sbjct: 133  NFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRD 192

Query: 692  CSGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRRYWALVIGCPRRSRGLVT 868
            CSGILVMGRT+TS A+LHSIFRE+TSRAS +E  TEK ILQRRYWALV+GCPRRS G+V 
Sbjct: 193  CSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPRRSGGVVN 252

Query: 869  APLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLR 1048
            APLGKVVVDNGKSDRITIVDNS LLSSQHA+TEYRVI SSSHG+TWLELSPLTGRKHQLR
Sbjct: 253  APLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLR 312

Query: 1049 VHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISE 1228
            VHCAEVLGTPIVGDYKYG QAH+KWG FD SN              LPFGLNLNKGSIS+
Sbjct: 313  VHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSN-LEDSTEEHLKEEALPFGLNLNKGSISD 371

Query: 1229 KHPRLHLHCKQIVLPNIFQALQNVQSA--SNYDLSVVEALNLEADLPPYMRRSWDVTNS 1399
            KHPRLHLHCKQIVLPNI QALQNVQS   S+YDLS VE+L LEADLPPYM++SW+VTNS
Sbjct: 372  KHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPYMKKSWEVTNS 430


>XP_007157229.1 hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
            ESW29223.1 hypothetical protein PHAVU_002G053600g
            [Phaseolus vulgaris]
          Length = 432

 Score =  589 bits (1518), Expect = 0.0
 Identities = 302/409 (73%), Positives = 334/409 (81%), Gaps = 7/409 (1%)
 Frame = +2

Query: 191  DKWLTLPPVTATVSSSLAANQL-----CSSTSPTALKWVLRCCPHLPKALVHKLFRLRRV 355
            +KWLTLPPV A+ S  +           SST  TALKW++RCCP  P +L+HKLFRLR+V
Sbjct: 27   EKWLTLPPVAASGSVEVKGKTKGKGNEVSSTPTTALKWIVRCCPSAPISLLHKLFRLRQV 86

Query: 356  RMLPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTP--KLECRVTAKEINFIRSL 529
            R+L   S    +TLKRV AKDTLNSGDRI LP SV++ PTP  K    +T ++INFIR+L
Sbjct: 87   RVL---SPPHTETLKRVAAKDTLNSGDRILLPQSVQQKPTPTRKPHSSLTPQQINFIRTL 143

Query: 530  VIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILV 709
            VI+KDPAILVLNKPPG+PVQGG+N+K SLDVVAAACLNYE SEPPRLVHRLDRDCSGILV
Sbjct: 144  VIHKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILV 203

Query: 710  MGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVV 889
            MGRTQTS  VLHSIFRE+TSRA D+T  EK+ILQRRYWALV+G PR S+GLVTA LGKVV
Sbjct: 204  MGRTQTSTTVLHSIFREKTSRALDDTEEEKRILQRRYWALVLGRPRCSKGLVTASLGKVV 263

Query: 890  VDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVL 1069
            VDNGKSDRIT+VDNST LSSQHAITEYRVI SSS GYTWLELSPLTGRKHQLRVHCAEVL
Sbjct: 264  VDNGKSDRITVVDNSTSLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVL 323

Query: 1070 GTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHL 1249
            GTPIVGDYKYGWQAHRKWG+FDLSN              LPFGLNLN GSISE  PRLHL
Sbjct: 324  GTPIVGDYKYGWQAHRKWGNFDLSN-VEDSCEEHLKEETLPFGLNLNNGSISENRPRLHL 382

Query: 1250 HCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            HCK+IVLPNI +ALQNVQS SN DLS VE L L ADLPPYM+RSWD+T+
Sbjct: 383  HCKKIVLPNISEALQNVQSFSNCDLSQVEGLQLVADLPPYMQRSWDITS 431


>XP_015958450.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Arachis
            duranensis]
          Length = 421

 Score =  573 bits (1476), Expect = 0.0
 Identities = 292/412 (70%), Positives = 335/412 (81%), Gaps = 1/412 (0%)
 Frame = +2

Query: 167  HFSVTRQSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRL 346
            HFS+T  ++KW TLPP + T +S   +    +S S TALKWVLRCCPHLPK LVHKLFRL
Sbjct: 22   HFSITNNNNKWHTLPPFSPTPTSLSPS----ASASTTALKWVLRCCPHLPKPLVHKLFRL 77

Query: 347  RRVRMLPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTP-KLECRVTAKEINFIR 523
            R+VR   + + +     KRV AKDTLNSGD IFLP SV+ +PT  K    +T  +I F+R
Sbjct: 78   RQVRRSSSPTII-----KRVAAKDTLNSGDTIFLPLSVKHIPTEVKRHSDLTPHQIQFVR 132

Query: 524  SLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGI 703
            SLV+YKDPA+LVLNKPPG+PVQGG+N+KRSLDV+AAACLN+E  + PRLVHRLDRDCSGI
Sbjct: 133  SLVLYKDPAVLVLNKPPGMPVQGGINIKRSLDVLAAACLNFEYPDSPRLVHRLDRDCSGI 192

Query: 704  LVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGK 883
            LVMGRTQTSA +LHSIFRE+TS ASD+   E +ILQRRY ALVIGCPRR RGL+TA LGK
Sbjct: 193  LVMGRTQTSATILHSIFREKTSTASDDIDAENRILQRRYIALVIGCPRRPRGLITASLGK 252

Query: 884  VVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAE 1063
            VVVDNGKSDRIT+VDNSTLLSSQHAITEY VIGSSSHGYTWLEL PLTGRKHQLRVHCAE
Sbjct: 253  VVVDNGKSDRITVVDNSTLLSSQHAITEYHVIGSSSHGYTWLELYPLTGRKHQLRVHCAE 312

Query: 1064 VLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRL 1243
            VLGTPIVGDYKYGWQAHRK+GH +LS+             +LPFGL +NKGSISE+ PRL
Sbjct: 313  VLGTPIVGDYKYGWQAHRKFGHDNLSD--VDSSEELCKEEMLPFGLTMNKGSISERCPRL 370

Query: 1244 HLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTNS 1399
            HLHCKQIVLPNI++ALQ+VQS  +YDL+ V  L L A LPPYM+RSWD+TNS
Sbjct: 371  HLHCKQIVLPNIYRALQDVQS-PHYDLNQVGNLALTAPLPPYMQRSWDITNS 421


>XP_016197034.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Arachis
            ipaensis]
          Length = 423

 Score =  567 bits (1461), Expect = 0.0
 Identities = 294/416 (70%), Positives = 335/416 (80%), Gaps = 5/416 (1%)
 Frame = +2

Query: 167  HFSVTR----QSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHK 334
            HFS+TR     ++KW TLPP + T +S      L +S S TALKWVLRCCPHLPK LVHK
Sbjct: 22   HFSITRLLPDNNNKWHTLPPFSPTPTS------LSASASTTALKWVLRCCPHLPKPLVHK 75

Query: 335  LFRLRRVRMLPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTPKLE-CRVTAKEI 511
            LFRLR+VR   + + +     KRV AKDTLNSGD IFLP SV+ +PT K     +T ++I
Sbjct: 76   LFRLRQVRRSSSPTII-----KRVAAKDTLNSGDTIFLPLSVKHIPTEKKRHSDLTPQQI 130

Query: 512  NFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRD 691
             F+RSLV+YKDPA+LVLNKPPG+PVQGG N+KRSLDV+AAACLN+E  + PRLVHRLDRD
Sbjct: 131  QFVRSLVLYKDPAVLVLNKPPGMPVQGGTNIKRSLDVLAAACLNFEYPDSPRLVHRLDRD 190

Query: 692  CSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTA 871
            CSGILVMGRTQTSA +LHSIFRE+TS ASD+   E +ILQRRY ALVIGCPRR RGL+TA
Sbjct: 191  CSGILVMGRTQTSATILHSIFREKTSTASDDIDAENRILQRRYIALVIGCPRRPRGLITA 250

Query: 872  PLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRV 1051
             LGKVVVDNGKSDRITIVDNSTLLSSQHAITEY VIGSSSHGYTWLEL PLTGRKHQLRV
Sbjct: 251  SLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYHVIGSSSHGYTWLELYPLTGRKHQLRV 310

Query: 1052 HCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEK 1231
            HCAEVLGTPIVGDYKYGWQAHRK+G  +LS+             +LPFGL +NKGSISE+
Sbjct: 311  HCAEVLGTPIVGDYKYGWQAHRKFGPDNLSD--VDSSEELCKEEMLPFGLTMNKGSISER 368

Query: 1232 HPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTNS 1399
             PRLHLHCKQIVLPNI++ALQ+VQS  +YDL+ V  L L A LPPYM+RSWD+TNS
Sbjct: 369  CPRLHLHCKQIVLPNIYRALQDVQS-PHYDLNQVGNLALTAPLPPYMQRSWDITNS 423


>XP_019441369.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Lupinus
            angustifolius] XP_019444510.1 PREDICTED: RNA
            pseudouridine synthase 4, mitochondrial-like [Lupinus
            angustifolius]
          Length = 412

 Score =  554 bits (1428), Expect = 0.0
 Identities = 279/414 (67%), Positives = 323/414 (78%), Gaps = 10/414 (2%)
 Frame = +2

Query: 188  SDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLRRVRMLP 367
            S KWLTLPP   T+ +    NQ+ S ++ TALKWV RCCP +PK LVHKLFRLR+VR  P
Sbjct: 3    SSKWLTLPPFIPTLVNVKNGNQISSPSTITALKWVTRCCPQIPKTLVHKLFRLRQVRTQP 62

Query: 368  AASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPTPKLECR--------VTAKEINFIR 523
                    + KR+  KDTLNSGD IFLP SV++ P P  + +        +T K+INFIR
Sbjct: 63   P----NHTSFKRLSPKDTLNSGDLIFLPQSVKQTPPPTHKHKHLSHSHPPLTDKQINFIR 118

Query: 524  SLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGI 703
            +L+IYKDPA+LVLNKPPGLPVQGG+N+K SLDV+AAA LNY+ SEPPRLVHRLDRDCSGI
Sbjct: 119  TLLIYKDPALLVLNKPPGLPVQGGINIKHSLDVLAAASLNYDYSEPPRLVHRLDRDCSGI 178

Query: 704  LVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGK 883
            LVM RT TSA +LHSIFR++TS AS    T+K ILQRRYWA+VIGCPRR +GLVTA LGK
Sbjct: 179  LVMARTHTSATILHSIFRDKTSTASHNIATDKTILQRRYWAMVIGCPRRPKGLVTASLGK 238

Query: 884  VVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAE 1063
            VVVDNGKSDRIT+VD ST +SSQHA+TEY+VIGSSS+GYTWLELSPLTGRKHQLRVHCAE
Sbjct: 239  VVVDNGKSDRITVVDKSTSVSSQHAVTEYKVIGSSSNGYTWLELSPLTGRKHQLRVHCAE 298

Query: 1064 VLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRL 1243
            VLGTPIVGDYKYGWQAH+KWG F+                +LPFGLN+ KGSI EK PRL
Sbjct: 299  VLGTPIVGDYKYGWQAHKKWGLFEDEEDSSEELLKEETETLLPFGLNMKKGSICEKRPRL 358

Query: 1244 HLHCKQIVLPNIFQALQNVQSAS--NYDLSVVEALNLEADLPPYMRRSWDVTNS 1399
            HLHCKQIVLPNI ++LQNV+S S  + DL  VE+L L A LPPYM+RSW+ TNS
Sbjct: 359  HLHCKQIVLPNICESLQNVESGSSRSCDLLGVESLELVAALPPYMQRSWEFTNS 412


>GAU29527.1 hypothetical protein TSUD_115490 [Trifolium subterraneum]
          Length = 354

 Score =  543 bits (1398), Expect = 0.0
 Identities = 275/355 (77%), Positives = 302/355 (85%), Gaps = 8/355 (2%)
 Frame = +2

Query: 359  MLPAASAV----QDQTLKRVVAKDTLNSGDRIFLPHSVREMPTPKLEC--RVTAKEINFI 520
            MLP+ S      QD   KRV  KD+LNSGDRIFLPHSV+++  PK +    +TAK+INFI
Sbjct: 1    MLPSLSLSPSQQQDHKFKRVTPKDSLNSGDRIFLPHSVKQITPPKHDSPLTLTAKQINFI 60

Query: 521  RSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSG 700
            R+LVIYKDP ILVLNKPPG+PVQGG+N+KRSLD VAA CLNY+ SEPPRLVHRLDRDCSG
Sbjct: 61   RTLVIYKDPHILVLNKPPGMPVQGGINIKRSLDAVAAECLNYDYSEPPRLVHRLDRDCSG 120

Query: 701  ILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLG 880
            ILVMGRT+TS  +LHSIFR++TS ASD+ GT+++ILQRRYWALV+GCPRRS GLVTAPLG
Sbjct: 121  ILVMGRTKTSTTLLHSIFRDKTSTASDDIGTKRRILQRRYWALVLGCPRRSGGLVTAPLG 180

Query: 881  KVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCA 1060
            KVVVDNGKSDRITIVDN T LSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCA
Sbjct: 181  KVVVDNGKSDRITIVDNPTSLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCA 240

Query: 1061 EVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPR 1240
            EVLGTPIVGDYKYG QAH+KWG FDLSN              LPFGLNLNKG IS+KHPR
Sbjct: 241  EVLGTPIVGDYKYGRQAHKKWGQFDLSN-LEDTTEELLKEEALPFGLNLNKGCISDKHPR 299

Query: 1241 LHLHCKQIVLPNIFQALQNVQSASN--YDLSVVEALNLEADLPPYMRRSWDVTNS 1399
            LHLHCKQIVLPNI QALQNVQS S+  YDLS VEAL LEADLPPYM++SWDVTNS
Sbjct: 300  LHLHCKQIVLPNISQALQNVQSLSDSTYDLSEVEALELEADLPPYMKKSWDVTNS 354


>GAV62308.1 PseudoU_synth_2 domain-containing protein [Cephalotus follicularis]
          Length = 467

 Score =  535 bits (1377), Expect = 0.0
 Identities = 265/428 (61%), Positives = 323/428 (75%), Gaps = 19/428 (4%)
 Frame = +2

Query: 173  SVTRQSDKWLTLPPVTATVSSSLAANQLC-----------SSTSPTALKWVLRCCPHLPK 319
            S  R+  KW  +PP T  ++ S   ++L            +++  TA+KWVL+CCP LP+
Sbjct: 41   STQRRGGKWFPVPPFTHAINGSALGSELARGGGGASASKAAASETTAIKWVLKCCPELPR 100

Query: 320  ALVHKLFRLRRVRMLPAASAVQD-------QTLKRVVAKDTLNSGDRIFLPHSVREMPTP 478
            +LV KLFRLR+VR   A     D         LKRV AKD LN GD+IFLP SV+E+P+ 
Sbjct: 101  SLVQKLFRLRQVRRGSADGGSSDLGAQGQAPQLKRVAAKDLLNLGDQIFLPISVQELPSE 160

Query: 479  KLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSE 658
            K EC    +E+NF+RSL +YKDPAI+V+NKP G+PVQGGV +KRSLD +AA CL+Y+ SE
Sbjct: 161  KQECHCCEEEVNFVRSLELYKDPAIIVVNKPSGMPVQGGVGIKRSLDELAATCLSYDYSE 220

Query: 659  PPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASD-ETGTEKKILQRRYWALVI 835
            PPRLVHRLDRDCSGILVMGRTQ SA VLHSIFRE+T  AS  E   +K+ILQRRYWALVI
Sbjct: 221  PPRLVHRLDRDCSGILVMGRTQLSATVLHSIFREKTVDASKCEINNKKRILQRRYWALVI 280

Query: 836  GCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLEL 1015
            G PRR++GLV APLGKVV+DNGKSDRIT+VD + ++SSQHA+TEYRVI SSSHGYTWLEL
Sbjct: 281  GSPRRTKGLVAAPLGKVVLDNGKSDRITVVDCAQMMSSQHAVTEYRVIQSSSHGYTWLEL 340

Query: 1016 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPF 1195
            SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HRKW  F  S+              LPF
Sbjct: 341  SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQFPFSD-LKNSNEDLCKEKTLPF 399

Query: 1196 GLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMR 1375
            G+++ +GS+SEKHPRLHLHCKQI+LPN+ QALQN+ ++S+YDLS + ++ L A +PPYM+
Sbjct: 400  GIDMERGSVSEKHPRLHLHCKQIILPNVSQALQNLLASSDYDLSELPSIELVAPMPPYMQ 459

Query: 1376 RSWDVTNS 1399
            RSWD+  S
Sbjct: 460  RSWDILKS 467


>XP_014633042.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X5
            [Glycine max]
          Length = 395

 Score =  526 bits (1355), Expect = 0.0
 Identities = 262/329 (79%), Positives = 284/329 (86%)
 Frame = +2

Query: 410  AKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQ 589
            AKDTLN+GDRI LP SV+   TP     +T ++INFIR+LVIYKDPAILVLNKPPG+PVQ
Sbjct: 68   AKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQ 126

Query: 590  GGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTS 769
            GG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGILVMGRT TS  VLHSIFRE+TS
Sbjct: 127  GGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTS 186

Query: 770  RASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSS 949
            RASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGKVVVDNG+SDRITIVDNSTL+SS
Sbjct: 187  RASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 246

Query: 950  QHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 1129
            QHAITEYRVI SSS GYTWLEL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH
Sbjct: 247  QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 306

Query: 1130 FDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSA 1309
            FDL N              LPFGLNLNKGSISE HPRLHLHCKQ+VLPNI QALQNVQSA
Sbjct: 307  FDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSA 365

Query: 1310 SNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            S+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 366  SSCDLSLVEELELVADLPPYMQRSWDVTN 394


>XP_014633041.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X4
            [Glycine max]
          Length = 397

 Score =  526 bits (1355), Expect = 0.0
 Identities = 262/329 (79%), Positives = 284/329 (86%)
 Frame = +2

Query: 410  AKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQ 589
            AKDTLN+GDRI LP SV+   TP     +T ++INFIR+LVIYKDPAILVLNKPPG+PVQ
Sbjct: 70   AKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQ 128

Query: 590  GGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTS 769
            GG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGILVMGRT TS  VLHSIFRE+TS
Sbjct: 129  GGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTS 188

Query: 770  RASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSS 949
            RASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGKVVVDNG+SDRITIVDNSTL+SS
Sbjct: 189  RASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 248

Query: 950  QHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 1129
            QHAITEYRVI SSS GYTWLEL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH
Sbjct: 249  QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 308

Query: 1130 FDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSA 1309
            FDL N              LPFGLNLNKGSISE HPRLHLHCKQ+VLPNI QALQNVQSA
Sbjct: 309  FDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSA 367

Query: 1310 SNYDLSVVEALNLEADLPPYMRRSWDVTN 1396
            S+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 368  SSCDLSLVEELELVADLPPYMQRSWDVTN 396


>XP_013453292.1 RNA pseudouridine synthase [Medicago truncatula] KEH27320.1 RNA
            pseudouridine synthase [Medicago truncatula]
          Length = 390

 Score =  526 bits (1354), Expect = 0.0
 Identities = 274/366 (74%), Positives = 300/366 (81%), Gaps = 10/366 (2%)
 Frame = +2

Query: 332  KLFRLRRVRMLPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREM----PTP---KLEC 490
            K   L  VRMLP      D   KRV  KDTLNSGDRIFLP+SV++     PTP   +   
Sbjct: 28   KWLTLPPVRMLPRQQ--DDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPL 85

Query: 491  RVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRL 670
             +TAK+INFIRSLVIYKDP ILVLNKPPG+PVQGG+N+K SLD VAA  LNY+ S+PPRL
Sbjct: 86   TLTAKQINFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRL 145

Query: 671  VHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRRYWALVIGCPR 847
            VHRLDRDCSGILVMGRT+TS A+LHSIFRE+TSRAS +E  TEK ILQRRYWALV+GCPR
Sbjct: 146  VHRLDRDCSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPR 205

Query: 848  RSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLT 1027
            RS G+V APLGKVVVDNGKSDRITIVDNS LLSSQHA+TEYRVI SSSHG+TWLELSPLT
Sbjct: 206  RSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLT 265

Query: 1028 GRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNL 1207
            GRKHQLRVHCAEVLGTPIVGDYKYG QAH+KWG FD SN              LPFGLNL
Sbjct: 266  GRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSN-LEDSTEEHLKEEALPFGLNL 324

Query: 1208 NKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSA--SNYDLSVVEALNLEADLPPYMRRS 1381
            NKGSIS+KHPRLHLHCKQIVLPNI QALQNVQS   S+YDLS VE+L LEADLPPYM++S
Sbjct: 325  NKGSISDKHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPYMKKS 384

Query: 1382 WDVTNS 1399
            W+VTNS
Sbjct: 385  WEVTNS 390


>XP_010096290.1 RNA pseudourine synthase 4 [Morus notabilis] EXB63685.1 RNA
            pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  528 bits (1359), Expect = 0.0
 Identities = 270/434 (62%), Positives = 318/434 (73%), Gaps = 23/434 (5%)
 Frame = +2

Query: 167  HFSVTRQSD--KWLTLPPVTATVSSSLAAN-------------QLCSSTSPTALKWVLRC 301
            H+S + + +  KW TLPP TATV  ++                Q   S + TALKWV+RC
Sbjct: 37   HYSASSEKNGTKWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRC 96

Query: 302  CPHLPKALVHKLFRLRRVRM-------LPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSV 460
            CP LP++LV KLFRLR+VR          A   +    L+RV AKD+LN GD+IFLP SV
Sbjct: 97   CPELPRSLVQKLFRLRQVRRESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISV 156

Query: 461  REMPTPKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACL 640
            +E+P  K EC    +E+ FIRSL +YKDPAI+V+NKPPGLPVQGG+ +K SLD +A  CL
Sbjct: 157  KELPVEKKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCL 216

Query: 641  NYESSEPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRR 817
            +Y+ +EPPRLVHRLDRDCSGILVMGRTQTSA VLHSIFRE+T  AS DET   K +LQRR
Sbjct: 217  SYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRR 276

Query: 818  YWALVIGCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHG 997
            YWA VIG PR   GL++APL KVV+DNGKSDRIT+V+ S  LSSQHAIT+Y+VIGSSSHG
Sbjct: 277  YWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHG 336

Query: 998  YTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXX 1177
            YTWLELSPLTGRKHQLRVHCAEVLGTP+VGDYKYGWQAHR W      +P          
Sbjct: 337  YTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPK 396

Query: 1178 XXILPFGLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEAD 1357
               LPFGLN++ GSISEKHPRLHLHCKQ+VLPNI   LQNVQ  S+Y+LS +E L L+A 
Sbjct: 397  RKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAP 456

Query: 1358 LPPYMRRSWDVTNS 1399
            LP YM+RSW +TNS
Sbjct: 457  LPSYMQRSWHLTNS 470


>XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Juglans regia]
          Length = 476

 Score =  524 bits (1350), Expect = e-180
 Identities = 265/425 (62%), Positives = 315/425 (74%), Gaps = 24/425 (5%)
 Frame = +2

Query: 188  SDKWLTLPPVTATVS----------------SSLAANQLCSSTSPTALKWVLRCCPHLPK 319
            SDKW TLPP T TV+                S +  +   +ST+ TALKWVLRCCP LP+
Sbjct: 51   SDKWFTLPPFTPTVNGAAFGKEISRNRAPLKSGVTTSATSTSTTTTALKWVLRCCPDLPR 110

Query: 320  ALVHKLFRLRRVRM--------LPAASAVQDQTLKRVVAKDTLNSGDRIFLPHSVREMPT 475
            +LV KLFRLR+VR            A   Q++ LKRV AKD++N GDRIFLP +V+E P 
Sbjct: 111  SLVQKLFRLRQVRRESNDVGSTCVDAQVQQERRLKRVSAKDSMNVGDRIFLPITVQEFPF 170

Query: 476  PKLECRVTAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESS 655
             K +C    +E NF+RSLV+YKDPAI+V+NKPPG+PVQGG+ +K+SLD +AA CL Y  S
Sbjct: 171  EKQDCHCNEEEANFVRSLVLYKDPAIVVVNKPPGMPVQGGIGIKQSLDGLAATCLTYNYS 230

Query: 656  EPPRLVHRLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVI 835
            E PRLVHRLDRD SGILVMGRTQTSAAVLHSIFRE+T  A D+   E +IL+RRYWALVI
Sbjct: 231  ETPRLVHRLDRDSSGILVMGRTQTSAAVLHSIFREKTFGAKDDVDNEVRILERRYWALVI 290

Query: 836  GCPRRSRGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLEL 1015
            G PRR +GL++ PLGKVVVDNGKSDRITIVDN+  +S+QHA+T+Y+VI SS +GYTWLEL
Sbjct: 291  GSPRRQKGLISVPLGKVVVDNGKSDRITIVDNAQNMSAQHALTKYQVIKSSCYGYTWLEL 350

Query: 1016 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPF 1195
            SPLTGRKHQLRVHCAEVLGTPIVGD KYGWQAH+K  H    +              +PF
Sbjct: 351  SPLTGRKHQLRVHCAEVLGTPIVGDLKYGWQAHKKLKHLPWPSLERESHENVTKGKTIPF 410

Query: 1196 GLNLNKGSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMR 1375
            GL+L  GSISEKHPRLHLHCKQ+VLPN+  ALQNVQ +S+Y LS VE+L L A LP YM+
Sbjct: 411  GLDLQSGSISEKHPRLHLHCKQMVLPNVSMALQNVQFSSDYHLSQVESLELVAPLPSYMQ 470

Query: 1376 RSWDV 1390
            RSWD+
Sbjct: 471  RSWDI 475


>XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            EEE87831.2 hypothetical protein POPTR_0009s09860g
            [Populus trichocarpa]
          Length = 471

 Score =  522 bits (1345), Expect = e-180
 Identities = 260/413 (62%), Positives = 318/413 (76%), Gaps = 14/413 (3%)
 Frame = +2

Query: 194  KWLTLPPVTATVSSSLAANQLC------SSTSPTALKWVLRCCPHLPKALVHKLFRLRRV 355
            KW TLPP T+T++ S+    L       S++  TALKWVLRCCP LP+ LV KLFRLR+V
Sbjct: 57   KWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCPELPRNLVQKLFRLRQV 116

Query: 356  RM-LPAASAV------QDQTLKRVVAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEIN 514
            R   P   +       Q+  LKRV AKD+++ GDRIFLP SV+ +P  K +C    +EIN
Sbjct: 117  RRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQDCHCNEEEIN 176

Query: 515  FIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDC 694
            FIR L +YKD AI+V+NKPPG+PVQGG+ +KRSLD ++A+C + + SEPPRLVHRLDRDC
Sbjct: 177  FIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDC 236

Query: 695  SGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRRYWALVIGCPRRSRGLVTA 871
            SGILVMGRTQTSA VLH+IFRE+T  AS D+ G +++ILQR+YWALVIG PRR +GL++A
Sbjct: 237  SGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISA 296

Query: 872  PLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRV 1051
            PLGKVVVDNGKSDRIT+V+NS  LSSQHA+T+YRVI  SSHG+TWLELSPLTGRKHQLRV
Sbjct: 297  PLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVI-ESSHGFTWLELSPLTGRKHQLRV 355

Query: 1052 HCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXXILPFGLNLNKGSISEK 1231
            HCAEVLGTPIVGDYKY WQAHR W     SN             ILPF L+L+ GSISEK
Sbjct: 356  HCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISEK 415

Query: 1232 HPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDV 1390
            HPRLHLHCKQ+VLP++ +ALQ+VQ +S+YD S + +L  +A LPPYM++SWD+
Sbjct: 416  HPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDI 468