BLASTX nr result

ID: Glycyrrhiza24_contig00032474 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00032474
         (224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610434.1| tRNA wybutosine-synthesizing protein 2/3/4 [...   105   4e-21
ref|XP_003529632.1| PREDICTED: tRNA wybutosine-synthesizing prot...    98   6e-19
ref|XP_004155603.1| PREDICTED: tRNA wybutosine-synthesizing prot...    92   6e-17
ref|XP_004134760.1| PREDICTED: LOW QUALITY PROTEIN: tRNA wybutos...    92   6e-17
ref|XP_002304908.1| predicted protein [Populus trichocarpa] gi|2...    91   1e-16

>ref|XP_003610434.1| tRNA wybutosine-synthesizing protein 2/3/4 [Medicago truncatula]
           gi|355511489|gb|AES92631.1| tRNA wybutosine-synthesizing
           protein 2/3/4 [Medicago truncatula]
          Length = 1046

 Score =  105 bits (262), Expect = 4e-21
 Identities = 55/74 (74%), Positives = 58/74 (78%)
 Frame = -2

Query: 223 EKRKAATLASLNSNESDKSPKGSLDTPIIPLINTLNQNPCYFTTSSCSGRXXXXXXXXXX 44
           EKRK+ATLASLNS ESDKSPKGSLDTPIIPLINTLNQNP YFTTSSCSGR          
Sbjct: 4   EKRKSATLASLNSTESDKSPKGSLDTPIIPLINTLNQNPNYFTTSSCSGRISILSQPLSP 63

Query: 43  XXXXQTKKKARGGS 2
               QTKKKA+GG+
Sbjct: 64  IPSPQTKKKAKGGT 77


>ref|XP_003529632.1| PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Glycine
           max]
          Length = 1068

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 50/74 (67%), Positives = 54/74 (72%)
 Frame = -2

Query: 223 EKRKAATLASLNSNESDKSPKGSLDTPIIPLINTLNQNPCYFTTSSCSGRXXXXXXXXXX 44
           EKRKAATLASL+S ESDKSPKGSLD  I+PL+NTLNQNP YFTTSSCSGR          
Sbjct: 27  EKRKAATLASLSSTESDKSPKGSLDAAIVPLLNTLNQNPSYFTTSSCSGRISILAQPLSL 86

Query: 43  XXXXQTKKKARGGS 2
                 KKKARGG+
Sbjct: 87  SDSPNPKKKARGGT 100


>ref|XP_004155603.1| PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Cucumis
           sativus]
          Length = 1035

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 50/76 (65%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
 Frame = -2

Query: 223 EKRKAATLASLNSNESDKSPKGSLDTPIIPLINTLNQNPCYFTTSSCSGR--XXXXXXXX 50
           EKRKAAT+ASL S E+DKSPKGSLDTPIIPLINTLN +P YFTTSSCSGR          
Sbjct: 4   EKRKAATMASLGSTETDKSPKGSLDTPIIPLINTLNSHPSYFTTSSCSGRISILAQPIST 63

Query: 49  XXXXXXQTKKKARGGS 2
                 + KKKA GGS
Sbjct: 64  TSAAAPKPKKKALGGS 79


>ref|XP_004134760.1| PREDICTED: LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing
           protein 2/3/4-like [Cucumis sativus]
          Length = 1034

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 50/76 (65%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
 Frame = -2

Query: 223 EKRKAATLASLNSNESDKSPKGSLDTPIIPLINTLNQNPCYFTTSSCSGR--XXXXXXXX 50
           EKRKAAT+ASL S E+DKSPKGSLDTPIIPLINTLN +P YFTTSSCSGR          
Sbjct: 4   EKRKAATMASLGSTETDKSPKGSLDTPIIPLINTLNSHPSYFTTSSCSGRISILAQPIST 63

Query: 49  XXXXXXQTKKKARGGS 2
                 + KKKA GGS
Sbjct: 64  TSAAAPKPKKKALGGS 79


>ref|XP_002304908.1| predicted protein [Populus trichocarpa] gi|222847872|gb|EEE85419.1|
           predicted protein [Populus trichocarpa]
          Length = 1031

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 45/74 (60%), Positives = 55/74 (74%)
 Frame = -2

Query: 223 EKRKAATLASLNSNESDKSPKGSLDTPIIPLINTLNQNPCYFTTSSCSGRXXXXXXXXXX 44
           EKRKAATL+SL S+++DKSPKG++DT +IPLINT+N +P YFTTSSCSGR          
Sbjct: 4   EKRKAATLSSLASSKTDKSPKGTVDTHLIPLINTINSHPSYFTTSSCSGRVSILSQPKWT 63

Query: 43  XXXXQTKKKARGGS 2
                +KKKARGGS
Sbjct: 64  PTPPTSKKKARGGS 77


Top