BLASTX nr result

ID: Glycyrrhiza24_contig00032344 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00032344
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003599985.1| ATP-dependent DNA helicase PIF1 [Medicago tr...    98   8e-19
ref|XP_003600272.1| Replication protein A 70 kDa DNA-binding sub...    90   2e-16
ref|XP_003600269.1| Replication protein A 70 kDa DNA-binding sub...    90   2e-16
ref|XP_003595510.1| Replication protein A 70 kDa DNA-binding sub...    80   2e-13
gb|AFK36314.1| unknown [Lotus japonicus]                               79   5e-13

>ref|XP_003599985.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
           gi|355489033|gb|AES70236.1| ATP-dependent DNA helicase
           PIF1 [Medicago truncatula]
          Length = 537

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 42/72 (58%), Positives = 62/72 (86%)
 Frame = -2

Query: 217 MALVFTPISEITGGKDSWSILAKVVRLWVVSDLSKHKIPFSIEMVLIDEQGSKIHATVKR 38
           MAL F PIS+I+  K +W+I A+VVRLW VSD +++ +PFSIEMVL+D +GS+IHA++K+
Sbjct: 1   MALTFEPISQISSSKPAWNIKARVVRLWKVSDFNRNTLPFSIEMVLMDSEGSRIHASIKK 60

Query: 37  TLVYKFQNQLKE 2
           TL+YKFQ++++E
Sbjct: 61  TLLYKFQSEIRE 72


>ref|XP_003600272.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
           truncatula] gi|355489320|gb|AES70523.1| Replication
           protein A 70 kDa DNA-binding subunit [Medicago
           truncatula]
          Length = 701

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 40/72 (55%), Positives = 60/72 (83%)
 Frame = -2

Query: 217 MALVFTPISEITGGKDSWSILAKVVRLWVVSDLSKHKIPFSIEMVLIDEQGSKIHATVKR 38
           MAL F PIS+I+  K + +I A+VVRLW +SD +++ +PFSIEMVL+D +GS+IHA++K+
Sbjct: 1   MALTFEPISQISSSKPAGNIKARVVRLWKLSDFNRNTLPFSIEMVLMDSEGSRIHASIKK 60

Query: 37  TLVYKFQNQLKE 2
           TL YKFQ++++E
Sbjct: 61  TLWYKFQSEIRE 72


>ref|XP_003600269.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
           truncatula] gi|355489317|gb|AES70520.1| Replication
           protein A 70 kDa DNA-binding subunit [Medicago
           truncatula]
          Length = 323

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 40/72 (55%), Positives = 60/72 (83%)
 Frame = -2

Query: 217 MALVFTPISEITGGKDSWSILAKVVRLWVVSDLSKHKIPFSIEMVLIDEQGSKIHATVKR 38
           MAL F PIS+I+  K + +I A+VVRLW +SD +++ +PFSIEMVL+D +GS+IHA++K+
Sbjct: 1   MALTFEPISQISSSKPAGNIKARVVRLWKLSDFNRNTLPFSIEMVLMDSEGSRIHASIKK 60

Query: 37  TLVYKFQNQLKE 2
           TL YKFQ++++E
Sbjct: 61  TLWYKFQSEIRE 72


>ref|XP_003595510.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
           truncatula] gi|355484558|gb|AES65761.1| Replication
           protein A 70 kDa DNA-binding subunit [Medicago
           truncatula]
          Length = 549

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 32/65 (49%), Positives = 54/65 (83%)
 Frame = -2

Query: 196 ISEITGGKDSWSILAKVVRLWVVSDLSKHKIPFSIEMVLIDEQGSKIHATVKRTLVYKFQ 17
           IS+I+  K++W+I  +VVRLW V D+ K ++P+S+EMVL+D +G +I+A+V+RTL+YK++
Sbjct: 8   ISDISPSKENWNIRVRVVRLWFVRDMKKDQLPYSLEMVLMDNKGDRINASVRRTLIYKYE 67

Query: 16  NQLKE 2
            +L+E
Sbjct: 68  KELRE 72


>gb|AFK36314.1| unknown [Lotus japonicus]
          Length = 242

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 35/72 (48%), Positives = 52/72 (72%)
 Frame = -2

Query: 217 MALVFTPISEITGGKDSWSILAKVVRLWVVSDLSKHKIPFSIEMVLIDEQGSKIHATVKR 38
           MA+    +S++   KD+W+I+ KVVRLWV    S  K+PFS+E+VL+D +G +IHA+V++
Sbjct: 1   MAIKVDDVSDVNNSKDTWNIVTKVVRLWVSPSFSGGKLPFSMELVLMDSKGCQIHASVRK 60

Query: 37  TLVYKFQNQLKE 2
           TLVY+F   L E
Sbjct: 61  TLVYRFHPLLTE 72


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