BLASTX nr result

ID: Glycyrrhiza24_contig00032192 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00032192
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding...   172   2e-41
ref|XP_002326828.1| chromatin remodeling complex subunit [Populu...   155   4e-36
ref|XP_004166129.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain...   150   1e-34
ref|XP_004140512.1| PREDICTED: chromodomain-helicase-DNA-binding...   150   1e-34
ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding...   146   1e-33

>ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine
            max]
          Length = 1482

 Score =  172 bits (437), Expect = 2e-41
 Identities = 87/101 (86%), Positives = 94/101 (93%)
 Frame = +2

Query: 2    LHLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQ 181
            LHLIRL+D C E+ MDGNAPKMVALAVVQSYNPR K+ RSEISL HLES L+KAA+SAAQ
Sbjct: 1376 LHLIRLDDCCGEQ-MDGNAPKMVALAVVQSYNPRHKIRRSEISLPHLESSLTKAAYSAAQ 1434

Query: 182  NSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 304
            NSASIHMPRIGYQDGSDRS+WYTIERLLRKYASIYNINI+V
Sbjct: 1435 NSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIYV 1475


>ref|XP_002326828.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222835143|gb|EEE73578.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 866

 Score =  155 bits (391), Expect = 4e-36
 Identities = 72/101 (71%), Positives = 90/101 (89%)
 Frame = +2

Query: 2    LHLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQ 181
            +HL+++ +  + +NM+G+ P+ VALAVVQSYNPRRKVPRSEIS+  LE+CLSKA+F+AAQ
Sbjct: 766  VHLVKIIENTDGQNMEGDTPRWVALAVVQSYNPRRKVPRSEISIPDLEACLSKASFAAAQ 825

Query: 182  NSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 304
            NSASIHMPRIGYQDG+DRSQWYT+ERLLRKYAS++ I I V
Sbjct: 826  NSASIHMPRIGYQDGTDRSQWYTVERLLRKYASVFGIKIHV 866


>ref|XP_004166129.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 1-like [Cucumis sativus]
          Length = 867

 Score =  150 bits (379), Expect = 1e-34
 Identities = 74/101 (73%), Positives = 88/101 (87%)
 Frame = +2

Query: 2    LHLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQ 181
            LHLI+L     E++   NAP+ VALAVVQSYNPRRKVPRS+ISL  LE+C+SKA+ SAA+
Sbjct: 760  LHLIKLGIISKEQSTSDNAPQWVALAVVQSYNPRRKVPRSKISLPDLENCISKASSSAAK 819

Query: 182  NSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 304
            +SASIHMPRIGYQDGSDRS+WYT+ERLLRKYASIYN+ I+V
Sbjct: 820  HSASIHMPRIGYQDGSDRSEWYTVERLLRKYASIYNVKIYV 860


>ref|XP_004140512.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Cucumis
            sativus]
          Length = 868

 Score =  150 bits (379), Expect = 1e-34
 Identities = 74/101 (73%), Positives = 88/101 (87%)
 Frame = +2

Query: 2    LHLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQ 181
            LHLI+L     E++   NAP+ VALAVVQSYNPRRKVPRS+ISL  LE+C+SKA+ SAA+
Sbjct: 761  LHLIKLGIISKEQSTSDNAPQWVALAVVQSYNPRRKVPRSKISLPDLENCISKASSSAAK 820

Query: 182  NSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 304
            +SASIHMPRIGYQDGSDRS+WYT+ERLLRKYASIYN+ I+V
Sbjct: 821  HSASIHMPRIGYQDGSDRSEWYTVERLLRKYASIYNVKIYV 861


>ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Vitis
            vinifera]
          Length = 876

 Score =  146 bits (369), Expect = 1e-33
 Identities = 73/101 (72%), Positives = 83/101 (82%)
 Frame = +2

Query: 2    LHLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQ 181
            LH I++ + C E+ MD NAP+ VALAVVQSYNPRRKVPRS IS+  LE CLSKA+F AAQ
Sbjct: 772  LHFIKINEDCEEQRMDCNAPQWVALAVVQSYNPRRKVPRSNISVPDLECCLSKASFLAAQ 831

Query: 182  NSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 304
             SASIHMPRIGYQ   DRS+WYT+ERLLRKYAS+Y I IFV
Sbjct: 832  KSASIHMPRIGYQ---DRSEWYTVERLLRKYASLYGIKIFV 869


Top