BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00032104
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transc...   213   1e-53
ref|XP_003591640.1| General transcription factor IIH subunit [Me...   195   3e-48
gb|ABP03696.1| BSD [Medicago truncatula]                              195   3e-48
ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc...   184   5e-45
ref|XP_004171236.1| PREDICTED: probable RNA polymerase II transc...   174   9e-42

>ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 587

 Score =  213 bits (542), Expect = 1e-53
 Identities = 106/130 (81%), Positives = 117/130 (90%), Gaps = 2/130 (1%)
 Frame = +2

Query: 29  MSSVQVVKRAKYKTTVKDPGTPGVLRLTQEKFVFRPNDPTSNNKLEVDFRIIKSHKHTKE 208
           MSS QVVKRAKYKTTVKDPGTPGVL+LTQ+KFVF+PNDPTS  KL+V+FR I+ HK TKE
Sbjct: 1   MSSRQVVKRAKYKTTVKDPGTPGVLKLTQDKFVFKPNDPTSKTKLDVEFRFIQGHKVTKE 60

Query: 209 GSNKPPWLNLTHSQGSYIFELESFSDLHTCRELVGIALSKH--GEATKVISEEQLSPAEM 382
           GS KP WLNL HSQGSYIFELE+F+DLH CRELVG+AL+K   GEATKVISEEQLSPAEM
Sbjct: 61  GSKKPAWLNLIHSQGSYIFELETFADLHVCRELVGVALNKQVPGEATKVISEEQLSPAEM 120

Query: 383 ALRIKLLQED 412
           AL+IKLLQED
Sbjct: 121 ALKIKLLQED 130


>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355480688|gb|AES61891.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 586

 Score =  195 bits (496), Expect = 3e-48
 Identities = 94/124 (75%), Positives = 107/124 (86%)
 Frame = +2

Query: 41  QVVKRAKYKTTVKDPGTPGVLRLTQEKFVFRPNDPTSNNKLEVDFRIIKSHKHTKEGSNK 220
           QVVKRAKYK+TVKDPGTPGV++LT++K VF+PNDPTSNNKL+VDFR+IKS K+TKEGS K
Sbjct: 7   QVVKRAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSTK 66

Query: 221 PPWLNLTHSQGSYIFELESFSDLHTCRELVGIALSKHGEATKVISEEQLSPAEMALRIKL 400
           PPWLNL HSQGSYIFE ESFSDLH CRE     +SK  EA KV+S+EQLS AEM LR+KL
Sbjct: 67  PPWLNLVHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRMKL 126

Query: 401 LQED 412
           L ED
Sbjct: 127 LGED 130


>gb|ABP03696.1| BSD [Medicago truncatula]
          Length = 160

 Score =  195 bits (496), Expect = 3e-48
 Identities = 94/124 (75%), Positives = 107/124 (86%)
 Frame = +2

Query: 41  QVVKRAKYKTTVKDPGTPGVLRLTQEKFVFRPNDPTSNNKLEVDFRIIKSHKHTKEGSNK 220
           QVVKRAKYK+TVKDPGTPGV++LT++K VF+PNDPTSNNKL+VDFR+IKS K+TKEGS K
Sbjct: 7   QVVKRAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSTK 66

Query: 221 PPWLNLTHSQGSYIFELESFSDLHTCRELVGIALSKHGEATKVISEEQLSPAEMALRIKL 400
           PPWLNL HSQGSYIFE ESFSDLH CRE     +SK  EA KV+S+EQLS AEM LR+KL
Sbjct: 67  PPWLNLVHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRMKL 126

Query: 401 LQED 412
           L ED
Sbjct: 127 LGED 130


>ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 604

 Score =  184 bits (468), Expect = 5e-45
 Identities = 100/153 (65%), Positives = 114/153 (74%), Gaps = 25/153 (16%)
 Frame = +2

Query: 29  MSSVQVVKRAKYKTTVKDPGTPGVLRLTQEKFVFRPNDPTSNNKLEVDFRIIKSHKHTKE 208
           MSS QVVKRAKYKTTVKDPGTPGVL+LTQ++FVF+PNDPTS  KL+V+FR I+ HK TKE
Sbjct: 1   MSSRQVVKRAKYKTTVKDPGTPGVLKLTQDRFVFKPNDPTSKTKLDVEFRFIQGHKVTKE 60

Query: 209 GSNKPPWLNLTHSQGSYIFELESFSDLHTCRELV-----------------------GIA 319
           GS +PP LNL  +QGS IFELESF+DLH CREL+                         A
Sbjct: 61  GSKQPPLLNLIRAQGSCIFELESFADLHVCRELLIMRRYYAVYLFDHRLKSQSNGVKSFA 120

Query: 320 LSKH--GEATKVISEEQLSPAEMALRIKLLQED 412
           L+++  GEATKVISEEQLSPAEMALRIKLLQED
Sbjct: 121 LNRNVPGEATKVISEEQLSPAEMALRIKLLQED 153


>ref|XP_004171236.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-3-like, partial [Cucumis sativus]
          Length = 220

 Score =  174 bits (440), Expect = 9e-42
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 9/138 (6%)
 Frame = +2

Query: 26  RMSSVQVVKRAKYKTTVKDPGTPGVLRLTQEKFVFRPNDPTSNNKLEVDFRIIKSHKHTK 205
           RM +  V K AKYKT+VKDPGTPGVL +T+ KFVFRP+DPTS +KL+V+FR IK HK+TK
Sbjct: 25  RMGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTK 84

Query: 206 EGSNKPPWLNLTHSQ-GSYIFELESFSDLHTCRELVGIALSKHGEATKVISE-------- 358
           EGSNKPPWLNLT  Q GSYIFE ++FSDLH CRELVG AL+K GEA +  SE        
Sbjct: 85  EGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPH 144

Query: 359 EQLSPAEMALRIKLLQED 412
           EQLS  EM LR++ LQED
Sbjct: 145 EQLSKLEMELRMRCLQED 162