BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00031089
         (439 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   213   1e-60
ref|XP_003606559.1| DNA-directed RNA polymerase subunit beta [Me...   202   2e-59
ref|XP_003606553.1| DNA-directed RNA polymerase [Medicago trunca...   211   6e-53
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              182   1e-51
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   183   1e-51

>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Glycine max]
          Length = 1391

 Score =  213 bits (541), Expect(2) = 1e-60
 Identities = 102/114 (89%), Positives = 109/114 (95%)
 Frame = +3

Query: 96  ELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAEAAAACMNRLAKL 275
           E KT+CPNDGFVYFRNSELISGQ+GKVTLGNGNKDGLFSVLLRDY+A AAA+CMNRLAKL
Sbjct: 630 EWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKDGLFSVLLRDYRAHAAASCMNRLAKL 689

Query: 276 SARWIGNHGFSIGIDDVQPKEILINRKDETISDGYRKCDDFIEAFNKGKLELKA 437
           SARWIGNHGFSIGIDDVQPKEILIN+KDETIS+GYR+CD  IEAFNKGKLEL A
Sbjct: 690 SARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRECDKHIEAFNKGKLELLA 743



 Score = 45.8 bits (107), Expect(2) = 1e-60
 Identities = 21/33 (63%), Positives = 28/33 (84%), Gaps = 2/33 (6%)
 Frame = +1

Query: 1   SILMRPHANVRVYVNLTVKEKTY--NTKLDDRK 93
           SI++RPHAN+RVYVNLTVKE+ Y  + K+ D+K
Sbjct: 596 SIILRPHANMRVYVNLTVKERNYTEDKKIKDKK 628


>ref|XP_003606559.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355507614|gb|AES88756.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1036

 Score =  202 bits (514), Expect(2) = 2e-59
 Identities = 96/115 (83%), Positives = 107/115 (93%)
 Frame = +3

Query: 87  QERELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAEAAAACMNRL 266
           +ERE KTMCP+DGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYK+ AAA+CMNRL
Sbjct: 472 REREFKTMCPDDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKSYAAASCMNRL 531

Query: 267 AKLSARWIGNHGFSIGIDDVQPKEILINRKDETISDGYRKCDDFIEAFNKGKLEL 431
           AKLSARWIGNHGFSIGIDDVQPK+ LI  K++TI DGY+KCD +IE FNKG+L+L
Sbjct: 532 AKLSARWIGNHGFSIGIDDVQPKDKLIKGKEKTIEDGYKKCDGYIEDFNKGELKL 586



 Score = 52.0 bits (123), Expect(2) = 2e-59
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = +1

Query: 1   SILMRPHANVRVYVNLTVKEKTYNTKLDDRKEN*K 105
           +IL+RPHANVRVYV LTV EK Y +KLDDR+   K
Sbjct: 443 NILLRPHANVRVYVTLTVMEKNYGSKLDDREREFK 477


>ref|XP_003606553.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355507608|gb|AES88750.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 807

 Score =  211 bits (536), Expect = 6e-53
 Identities = 103/126 (81%), Positives = 112/126 (88%)
 Frame = +3

Query: 54  KGENVQHKA**QERELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYK 233
           K +N   K   +ERE KTMCP+DGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYK
Sbjct: 374 KEKNYGSKLDDREREFKTMCPDDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYK 433

Query: 234 AEAAAACMNRLAKLSARWIGNHGFSIGIDDVQPKEILINRKDETISDGYRKCDDFIEAFN 413
           ++AAA+CMNRLAKLSARWIGNHGFSIGIDDVQPK+ LI  K+ETI DGY+KCD FIEAFN
Sbjct: 434 SDAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKDKLIKGKEETIDDGYKKCDGFIEAFN 493

Query: 414 KGKLEL 431
            GKLEL
Sbjct: 494 SGKLEL 499



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 1   SILMRPHANVRVYVNLTVKEKTYNTKLDDRKEN*K 105
           SIL+RPHANVRVYVNLTVKEK Y +KLDDR+   K
Sbjct: 356 SILLRPHANVRVYVNLTVKEKNYGSKLDDREREFK 390


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  182 bits (461), Expect(2) = 1e-51
 Identities = 88/123 (71%), Positives = 101/123 (82%)
 Frame = +3

Query: 66  VQHKA**QERELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAEAA 245
           V  K   + R  +TMCP+DGFVYFRNSELISGQLGK TLGNGNKDGLFSVLLRDY A AA
Sbjct: 614 VMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYNAHAA 673

Query: 246 AACMNRLAKLSARWIGNHGFSIGIDDVQPKEILINRKDETISDGYRKCDDFIEAFNKGKL 425
           AACMNRLAKLSARWIGNHGFSIGIDDVQP  +L ++K + I +GY  C + I+ +NKGKL
Sbjct: 674 AACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKL 733

Query: 426 ELK 434
           +L+
Sbjct: 734 KLQ 736



 Score = 46.2 bits (108), Expect(2) = 1e-51
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +1

Query: 1   SILMRPHANVRVYVNLTVKEKTYNTK 78
           ++L+RPHANVRVY+NLTV EKTYN +
Sbjct: 597 NVLLRPHANVRVYLNLTVMEKTYNKR 622


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Cucumis sativus]
          Length = 1400

 Score =  183 bits (465), Expect(2) = 1e-51
 Identities = 88/116 (75%), Positives = 97/116 (83%)
 Frame = +3

Query: 90  ERELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAEAAAACMNRLA 269
           E+E +TMCPNDGFVYFRNSELISGQ+GK TLGNGNKDGL+SVLLRDYKA AAA CMNRLA
Sbjct: 622 EKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLA 681

Query: 270 KLSARWIGNHGFSIGIDDVQPKEILINRKDETISDGYRKCDDFIEAFNKGKLELKA 437
           KLSARWIGNHGFSIGIDDVQP + L+ +K  TI +GYR CD  I  FN G L  +A
Sbjct: 682 KLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYRDCDKQINLFNTGNLPPEA 737



 Score = 44.7 bits (104), Expect(2) = 1e-51
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +1

Query: 1   SILMRPHANVRVYVNLTVKEKTYNTKLDDRKEN*KQC 111
           S+L+RPHA+++VY+NLTVKEK+Y+    + KE    C
Sbjct: 593 SVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMC 629