BLASTX nr result

ID: Glycyrrhiza24_contig00030689 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00030689
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519517.1| PREDICTED: chromodomain-helicase-DNA-binding...    57   2e-06
ref|XP_003600162.1| DNA-directed RNA polymerase [Medicago trunca...    56   3e-06
ref|XP_003545390.1| PREDICTED: chromodomain-helicase-DNA-binding...    56   3e-06

>ref|XP_003519517.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Glycine max]
          Length = 1767

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +2

Query: 2   EQSDSLHYRGFHQPTGSNSLPQRKSTIANRRVHRKSRIS 118
           EQSDSLHY G  +PTGSNS PQR ST ANR +HR  R S
Sbjct: 182 EQSDSLHYGGIKKPTGSNSWPQRMSTSANRTLHRNLRFS 220


>ref|XP_003600162.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355489210|gb|AES70413.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 2083

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/77 (44%), Positives = 36/77 (46%)
 Frame = +2

Query: 2   EQSDSLHYRGFHQPTGSNSLPQRKSTIANRRVHRKSRISXXXXXXXXXXXXXXXXXXXXX 181
           EQ +S+H RGF   TGSNS  Q  ST  NRRVHRKSRI                      
Sbjct: 163 EQGESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRKSRILDDAEDDDDDADYEEDEPDEDD 222

Query: 182 XXXXXXXPATSGRAANK 232
                  PATSGR ANK
Sbjct: 223 PDDADFEPATSGRGANK 239


>ref|XP_003545390.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Glycine max]
          Length = 1764

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +2

Query: 2   EQSDSLHYRGFHQPTGSNSLPQRKSTIANRRVHRKSRIS 118
           EQSDSLHY G  +PT SNS PQR ST ANR +HR SR S
Sbjct: 182 EQSDSLHYGGIKKPTESNSWPQRMSTSANRTLHRNSRFS 220


Top