BLASTX nr result

ID: Glycyrrhiza24_contig00030516 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00030516
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555617.1| PREDICTED: uncharacterized protein LOC100797...    77   1e-12
ref|XP_003626181.1| PHD and RING finger domain-containing protei...    68   9e-10
ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap...    59   3e-07
ref|XP_004165905.1| PREDICTED: uncharacterized protein LOC101229...    57   2e-06
ref|XP_004135770.1| PREDICTED: uncharacterized protein LOC101205...    57   2e-06

>ref|XP_003555617.1| PREDICTED: uncharacterized protein LOC100797448 [Glycine max]
          Length = 813

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 49/89 (55%), Positives = 53/89 (59%)
 Frame = -1

Query: 267 RRSSRASKKPTXXXXXXXXXXXXKVECDDEDNFIDNGPTIXXXXXXXXXXXXXRPLLSDS 88
           RRSS ASKKP             K +C  ED+FIDNG TI             R LLSDS
Sbjct: 213 RRSSIASKKPLRNKRRKNGRLRKKEKC--EDDFIDNGTTIGTTTRRKQGQKRRRVLLSDS 270

Query: 87  DCVSSEPSDFEYTISEEEREQVREAKKLC 1
           D  SS  SDFE+TISEEEREQVREAK+LC
Sbjct: 271 DYASSGSSDFEFTISEEEREQVREAKRLC 299


>ref|XP_003626181.1| PHD and RING finger domain-containing protein [Medicago truncatula]
           gi|355501196|gb|AES82399.1| PHD and RING finger
           domain-containing protein [Medicago truncatula]
          Length = 904

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 42/93 (45%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
 Frame = -1

Query: 267 RRSSRASKKPTXXXXXXXXXXXXKVECDDEDNFIDNGPTIXXXXXXXXXXXXXRPLLSD- 91
           R  S  SKKP             KV+CDD D+F+DN P I             R +L D 
Sbjct: 271 RSGSGVSKKPKRKRRRKNGGSTRKVQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDA 330

Query: 90  ---SDCVSSEPSDFEYTISEEEREQVREAKKLC 1
              SDC  S PSD+E+TISEEE+EQVREA +LC
Sbjct: 331 NSGSDC-ESRPSDYEFTISEEEKEQVREAVQLC 362


>ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap interacting protein,
           putative [Ricinus communis] gi|223548440|gb|EEF49931.1|
           splicing factor, arginine/serine-rich 2,rnap interacting
           protein, putative [Ricinus communis]
          Length = 791

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
 Frame = -1

Query: 267 RRSSRASKKPTXXXXXXXXXXXXKVECDDEDN----FIDNGPTIXXXXXXXXXXXXXRPL 100
           RR SR SKKP             K  C+ +D     FID+   +               +
Sbjct: 168 RRKSRVSKKPLANKGRNNRRLRKKERCEFDDEYEGEFIDDSAFVRARSSKNSSARSRYAV 227

Query: 99  LSDSDCVSSEPSDFEYTISEEEREQVREAKKL 4
            SDSD +SS  SD+EYTISEEEREQVRE  KL
Sbjct: 228 YSDSDFMSSGSSDYEYTISEEEREQVREGSKL 259


>ref|XP_004165905.1| PREDICTED: uncharacterized protein LOC101229320 [Cucumis sativus]
          Length = 845

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = -1

Query: 267 RRSSRASKKPTXXXXXXXXXXXXKVECDDEDN-FIDNGPTIXXXXXXXXXXXXXRPLL-S 94
           +R  +A+KKP+                DD+D+ F DN PT+             R ++ S
Sbjct: 200 KRKPKAAKKPSRNKRRKKSGPQTVRNSDDDDDDFSDNYPTMKITRRKRPVSKRKRYVVQS 259

Query: 93  DSDCVSSEPSDFEYTISEEEREQVREAKKLC 1
           D D + S  SD+EYTISEEEREQVREA++LC
Sbjct: 260 DLDGLLSGSSDYEYTISEEEREQVREAERLC 290


>ref|XP_004135770.1| PREDICTED: uncharacterized protein LOC101205950 [Cucumis sativus]
          Length = 830

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = -1

Query: 267 RRSSRASKKPTXXXXXXXXXXXXKVECDDEDN-FIDNGPTIXXXXXXXXXXXXXRPLL-S 94
           +R  +A+KKP+                DD+D+ F DN PT+             R ++ S
Sbjct: 185 KRKPKAAKKPSRNKRRKKSGPQTVRNSDDDDDDFSDNYPTMKITRRKRPVSKRKRYVVQS 244

Query: 93  DSDCVSSEPSDFEYTISEEEREQVREAKKLC 1
           D D + S  SD+EYTISEEEREQVREA++LC
Sbjct: 245 DLDGLLSGSSDYEYTISEEEREQVREAERLC 275


Top