BLASTX nr result

ID: Glycyrrhiza24_contig00030442 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00030442
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002339778.1| predicted protein [Populus trichocarpa] gi|2...    69   1e-34
ref|XP_002333907.1| predicted protein [Populus trichocarpa] gi|2...    69   9e-23

>ref|XP_002339778.1| predicted protein [Populus trichocarpa] gi|222832218|gb|EEE70695.1|
           predicted protein [Populus trichocarpa]
          Length = 307

 Score = 69.3 bits (168), Expect(3) = 1e-34
 Identities = 34/45 (75%), Positives = 36/45 (80%)
 Frame = +2

Query: 140 QSHSLLPVPVSLTRSGYPKIIPAFHRKMIMKKDQKAYLWVHIYLS 274
           Q H LLPVPVSLTRSGYP IIP FHRKMI +KD+KA   V IYLS
Sbjct: 39  QPHGLLPVPVSLTRSGYPTIIPEFHRKMIRRKDEKADQLVKIYLS 83



 Score = 62.4 bits (150), Expect(3) = 1e-34
 Identities = 32/59 (54%), Positives = 43/59 (72%)
 Frame = +1

Query: 250 LMGSYISVFSLCRAIRLAKRIDRYILKSIVTPSTGLPRQSQLINDIVALSKDLILRYCP 426
           L+  Y+S FS+CR+IRLAKR+DR IL+SIV+PS    +    I DIV  S+ L++RYCP
Sbjct: 77  LVKIYLSYFSVCRSIRLAKRLDRSILESIVSPSQVTDQWRDRIIDIVHYSRYLLVRYCP 135



 Score = 60.5 bits (145), Expect(3) = 1e-34
 Identities = 29/39 (74%), Positives = 35/39 (89%)
 Frame = +3

Query: 30  YLVAKQVIQLNRRSGPLFTALYLKQAATCCKQAYAGVSR 146
           YLVAK+VI+LNR+SGPLFTALYLKQ A   +QAYAGV++
Sbjct: 1   YLVAKRVIRLNRKSGPLFTALYLKQCAGSLQQAYAGVAQ 39


>ref|XP_002333907.1| predicted protein [Populus trichocarpa] gi|222838895|gb|EEE77246.1|
           predicted protein [Populus trichocarpa]
          Length = 392

 Score = 69.3 bits (168), Expect(2) = 9e-23
 Identities = 34/45 (75%), Positives = 36/45 (80%)
 Frame = +2

Query: 140 QSHSLLPVPVSLTRSGYPKIIPAFHRKMIMKKDQKAYLWVHIYLS 274
           Q H LLPVPVSLTRSGYP IIP FHRKMI +KD+KA   V IYLS
Sbjct: 43  QPHGLLPVPVSLTRSGYPTIIPEFHRKMIRRKDEKADQLVKIYLS 87



 Score = 69.3 bits (168), Expect(2) = 9e-23
 Identities = 34/45 (75%), Positives = 36/45 (80%)
 Frame = +2

Query: 140 QSHSLLPVPVSLTRSGYPKIIPAFHRKMIMKKDQKAYLWVHIYLS 274
           Q H LLPVPVSLTRSGYP IIP FHRKMI +KD+KA   V IYLS
Sbjct: 231 QPHGLLPVPVSLTRSGYPTIIPEFHRKMIRRKDEKADQLVKIYLS 275



 Score = 62.4 bits (150), Expect(2) = 9e-23
 Identities = 32/59 (54%), Positives = 43/59 (72%)
 Frame = +1

Query: 250 LMGSYISVFSLCRAIRLAKRIDRYILKSIVTPSTGLPRQSQLINDIVALSKDLILRYCP 426
           L+  Y+S FS+CR+IRLAKR+DR IL+SIV+PS    +    I DIV  S+ L++RYCP
Sbjct: 81  LVKIYLSYFSVCRSIRLAKRLDRSILESIVSPSQVTDQWRDRIIDIVHYSRYLLVRYCP 139



 Score = 62.4 bits (150), Expect(2) = 9e-23
 Identities = 32/59 (54%), Positives = 43/59 (72%)
 Frame = +1

Query: 250 LMGSYISVFSLCRAIRLAKRIDRYILKSIVTPSTGLPRQSQLINDIVALSKDLILRYCP 426
           L+  Y+S FS+CR+IRLAKR+DR IL+SIV+PS    +    I DIV  S+ L++RYCP
Sbjct: 269 LVKIYLSYFSVCRSIRLAKRLDRSILESIVSPSQVTDQWRDRIIDIVHYSRYLLVRYCP 327


Top