BLASTX nr result

ID: Glycyrrhiza24_contig00030192 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00030192
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding...   218   4e-55
ref|XP_002326828.1| chromatin remodeling complex subunit [Populu...   164   5e-39
ref|XP_002511628.1| helicase, putative [Ricinus communis] gi|223...   153   2e-35
ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding...   151   5e-35
emb|CAN83037.1| hypothetical protein VITISV_034336 [Vitis vinifera]   151   5e-35

>ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine
            max]
          Length = 1482

 Score =  218 bits (555), Expect = 4e-55
 Identities = 109/141 (77%), Positives = 122/141 (86%)
 Frame = +3

Query: 3    HVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKRTSAVGTSDLKSIIFGLH 182
            HVLCINLVTE TVEEVIMRRAERKL LSLNV GDNIL+ ++K  S VG+ DLKSIIFGLH
Sbjct: 1099 HVLCINLVTERTVEEVIMRRAERKLLLSLNVIGDNILKDDNKEPSEVGSGDLKSIIFGLH 1158

Query: 183  MFDPNEIDDGKHRDMDLPEINAMADKVIAMRDEQIVDKDDRKIEVNPRNYLKGYNVKEGG 362
            MFDP EI+DG HR+M++PEI AMAD+V+AMRDEQI+D D+RK EVNP N LKG  VKE  
Sbjct: 1159 MFDPTEINDGNHRNMNIPEICAMADRVLAMRDEQILDNDERKFEVNPTNILKGDAVKERD 1218

Query: 363  SASLSCDIGLDEASYLSWVKK 425
            SASLSCD+GLDEASYLSWVKK
Sbjct: 1219 SASLSCDLGLDEASYLSWVKK 1239


>ref|XP_002326828.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222835143|gb|EEE73578.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 866

 Score =  164 bits (416), Expect = 5e-39
 Identities = 83/142 (58%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
 Frame = +3

Query: 3   HVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKRTSAVGTSDLKSIIFGLH 182
           HVL INLVT H+VEEVIM+RA+RKLQLS +V GD+++E + K T  + T DL+SIIFGLH
Sbjct: 488 HVLSINLVTRHSVEEVIMQRAKRKLQLSHDVVGDDVMEEDRKETGGIETGDLRSIIFGLH 547

Query: 183 MFDPNEIDDGKHRDMDLPEINAMADKVIAMRDEQIVDKDDRKIEVNPRNYLKGYNVKEGG 362
            FDP+E++  K  +++  E+ A+A KVIA+R +QI+DKDDRK EVNP    KG +   GG
Sbjct: 548 RFDPSEVNSEKSNELNASELKALAQKVIALRCDQILDKDDRKFEVNPIGQEKGLDFVSGG 607

Query: 363 SASL-SCDIGLDEASYLSWVKK 425
            ++L S D GLDEASYLSWV+K
Sbjct: 608 ESALASYDPGLDEASYLSWVEK 629


>ref|XP_002511628.1| helicase, putative [Ricinus communis] gi|223548808|gb|EEF50297.1|
           helicase, putative [Ricinus communis]
          Length = 860

 Score =  153 bits (386), Expect = 2e-35
 Identities = 81/142 (57%), Positives = 107/142 (75%), Gaps = 1/142 (0%)
 Frame = +3

Query: 3   HVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKRTSAVGTSDLKSIIFGLH 182
           HVL INLVT HTVEEVIMRRAE+KLQLS NV GD+++E + K    V T DL+SIIFGLH
Sbjct: 483 HVLSINLVTRHTVEEVIMRRAEKKLQLSNNVLGDDVMEQKGKEPVGVETVDLRSIIFGLH 542

Query: 183 MFDPNEIDDGKHRDMDLPEINAMADKVIAMRDEQIVDKDDRKIEVNPRNYLKGYNVKEGG 362
           +FDP+EI   K  ++++PE+NAM  KVI +RD+Q + KD  K +++  +  KG++V  GG
Sbjct: 543 IFDPSEIITEKPDELNMPELNAMIVKVIGIRDDQGLAKDGGKYKLDQVDQKKGFDVVTGG 602

Query: 363 -SASLSCDIGLDEASYLSWVKK 425
            SA ++ D GLDEASYLSWV++
Sbjct: 603 NSAFINYDPGLDEASYLSWVER 624


>ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Vitis
           vinifera]
          Length = 876

 Score =  151 bits (382), Expect = 5e-35
 Identities = 78/142 (54%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
 Frame = +3

Query: 3   HVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKRTSAVGTSDLKSIIFGLH 182
           HVL INLVT  TVEE+IMRRAERKLQLS NV G+  ++ E K  +     DL+S+IFGL 
Sbjct: 494 HVLSINLVTGRTVEEIIMRRAERKLQLSHNVVGEVDIDREGKEMAGAEAGDLRSVIFGLR 553

Query: 183 MFDPNEIDDGKHRDMDLPEINAMADKVIAMRDEQIVDKDDRKIEVNPRNYLKGYN-VKEG 359
           M DP+EI++ +  + ++ E++AMADKV+A+R EQ + KDDRK EVNP + LKG++ + + 
Sbjct: 554 MIDPSEINNDESSEPNMSELDAMADKVVAIRHEQQLGKDDRKFEVNPMDLLKGHDLIMDR 613

Query: 360 GSASLSCDIGLDEASYLSWVKK 425
            S S+  D GLDEASYL WV+K
Sbjct: 614 SSVSVDFDPGLDEASYLVWVEK 635


>emb|CAN83037.1| hypothetical protein VITISV_034336 [Vitis vinifera]
          Length = 1054

 Score =  151 bits (382), Expect = 5e-35
 Identities = 78/142 (54%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
 Frame = +3

Query: 3   HVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKRTSAVGTSDLKSIIFGLH 182
           HVL INLVT  TVEE+IMRRAERKLQLS NV G+  ++ E K  +     DL+S+IFGL 
Sbjct: 574 HVLSINLVTGRTVEEIIMRRAERKLQLSHNVVGEVDIDREGKEMAGAEAGDLRSVIFGLR 633

Query: 183 MFDPNEIDDGKHRDMDLPEINAMADKVIAMRDEQIVDKDDRKIEVNPRNYLKGYN-VKEG 359
           M DP+EI++ +  + ++ E++AMADKV+A+R EQ + KDDRK EVNP + LKG++ + + 
Sbjct: 634 MIDPSEINNDESSEPNMSELDAMADKVVAIRHEQQLGKDDRKFEVNPMDLLKGHDLIMDR 693

Query: 360 GSASLSCDIGLDEASYLSWVKK 425
            S S+  D GLDEASYL WV+K
Sbjct: 694 SSVSVDFDPGLDEASYLVWVEK 715


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