BLASTX nr result

ID: Glycyrrhiza24_contig00030102 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00030102
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003520128.1| PREDICTED: squamosa promoter-binding-like pr...   175   3e-42
ref|XP_003517860.1| PREDICTED: squamosa promoter-binding-like pr...   173   1e-41
ref|XP_003614226.1| Squamosa promoter binding protein [Medicago ...   161   5e-38
ref|XP_002273534.2| PREDICTED: squamosa promoter-binding-like pr...    81   1e-13
emb|CBI27317.3| unnamed protein product [Vitis vinifera]               66   3e-09

>ref|XP_003520128.1| PREDICTED: squamosa promoter-binding-like protein 6-like [Glycine
           max]
          Length = 482

 Score =  175 bits (444), Expect = 3e-42
 Identities = 100/119 (84%), Positives = 105/119 (88%), Gaps = 2/119 (1%)
 Frame = +3

Query: 3   SLDAFIRSRKPLVEWDNKSSCNF-ERDGFNSDREVVNKSMEFVDLGFPDLLQKSSFHGSQ 179
           SLDAF+RSRK LVEWDNKS  NF E+DGFNSDREVV +SMEFVDLGFPDLLQKS FHGSQ
Sbjct: 22  SLDAFMRSRKALVEWDNKS--NFVEKDGFNSDREVV-RSMEFVDLGFPDLLQKS-FHGSQ 77

Query: 180 PFEKSICELDSN-SSKRGNSSTHVIALDSSFGEQESESKHLSSLVESKIHDSSLIDLKL 353
           P E S  ELDSN SSKRGNSS HVIALDSS GE+ES+SKHLSSLVESK HDSSLIDLKL
Sbjct: 78  PLETSSYELDSNNSSKRGNSSPHVIALDSSMGEEESDSKHLSSLVESKTHDSSLIDLKL 136


>ref|XP_003517860.1| PREDICTED: squamosa promoter-binding-like protein 6-like [Glycine
           max]
          Length = 482

 Score =  173 bits (439), Expect = 1e-41
 Identities = 101/119 (84%), Positives = 103/119 (86%), Gaps = 2/119 (1%)
 Frame = +3

Query: 3   SLDAFIRSRKPLVEWDNKSSCNF-ERDGFNSDREVVNKSMEFVDLGFPDLLQKSSFHGSQ 179
           SLDAF+RSRK LVEWDNKS  NF ERDGFNSDREVV KSMEFVDLGFPDLLQKS FHGS 
Sbjct: 22  SLDAFMRSRKALVEWDNKS--NFVERDGFNSDREVV-KSMEFVDLGFPDLLQKS-FHGSL 77

Query: 180 PFEKSICELDSN-SSKRGNSSTHVIALDSSFGEQESESKHLSSLVESKIHDSSLIDLKL 353
           P E S  ELDSN SSKRGNSSTHVIALDSS GE+ES SKHLSSLVESK  DSSLIDLKL
Sbjct: 78  PLETSSYELDSNNSSKRGNSSTHVIALDSSMGEEESNSKHLSSLVESKTQDSSLIDLKL 136


>ref|XP_003614226.1| Squamosa promoter binding protein [Medicago truncatula]
           gi|355515561|gb|AES97184.1| Squamosa promoter binding
           protein [Medicago truncatula]
          Length = 474

 Score =  161 bits (408), Expect = 5e-38
 Identities = 90/118 (76%), Positives = 97/118 (82%), Gaps = 1/118 (0%)
 Frame = +3

Query: 3   SLDAFIRSRKPLVEWDNKSSCNFERDGFNSDREVVNKSMEFVDLGFPDLLQKSSFHGSQP 182
           SLDAF+RSRKPLVEW+NKSSCNFERDGFNSDREVV KSMEFVDLGFP    +SS      
Sbjct: 22  SLDAFMRSRKPLVEWENKSSCNFERDGFNSDREVV-KSMEFVDLGFP---MESSRTVRGS 77

Query: 183 FEKSICELDSN-SSKRGNSSTHVIALDSSFGEQESESKHLSSLVESKIHDSSLIDLKL 353
            + S CELDSN SSKR NSS HVIA DSSF E++SE+KHLSS VESK HDSSLIDLKL
Sbjct: 78  VQTSSCELDSNNSSKRENSSVHVIAFDSSFAEEDSEAKHLSSRVESKNHDSSLIDLKL 135


>ref|XP_002273534.2| PREDICTED: squamosa promoter-binding-like protein 6-like [Vitis
           vinifera]
          Length = 611

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
 Frame = +3

Query: 9   DAFIRSRKPLVEWDNKSSCNFERDGFNSDREVVNKSMEFVDLGFPDLLQKSSFHGSQPFE 188
           DA  RSRK L  WD ++  NFE DG   DR+ V +SMEF++L  PDL++K     S P  
Sbjct: 110 DAVGRSRKLLTGWDMRTPFNFENDGLVLDRDAV-ESMEFMELDSPDLVRK--LLPSNPSV 166

Query: 189 KSIC-ELDSNSSKRGNSSTHVIALDSSFGEQESESKHLSSLVESKIHDSSLIDLKL 353
             +  E+  NSSKR  S T+++  +  FG +ES S+  SS +ES   DSS+IDLKL
Sbjct: 167 GFLSGEIGRNSSKRIVSPTNMVTSNPIFGGEESSSRLSSSFMESNSQDSSIIDLKL 222


>emb|CBI27317.3| unnamed protein product [Vitis vinifera]
          Length = 498

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
 Frame = +3

Query: 66  NFERDGFNSDREVVNKSMEFVDLGFPDLLQKSSFHGSQPFEKSIC-ELDSNSSKRGNSST 242
           NFE DG   DR+ V +SMEF++L  PDL++K     S P    +  E+  NSSKR  S T
Sbjct: 16  NFENDGLVLDRDAV-ESMEFMELDSPDLVRK--LLPSNPSVGFLSGEIGRNSSKRIVSPT 72

Query: 243 HVIALDSSFGEQESESKHLSSLVESKIHDSSLIDLKL 353
           +++  +  FG +ES S+  SS +ES   DSS+IDLKL
Sbjct: 73  NMVTSNPIFGGEESSSRLSSSFMESNSQDSSIIDLKL 109


Top