BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00030073
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612353.1| Pentatricopeptide repeat-containing protein ...   217   9e-55
gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygr...    93   3e-17
ref|XP_003622500.1| Pentatricopeptide repeat-containing protein ...    92   3e-17
dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]                       91   7e-17
ref|XP_002873115.1| EMB175 [Arabidopsis lyrata subsp. lyrata] gi...    89   4e-16

>ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513688|gb|AES95311.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  217 bits (552), Expect = 9e-55
 Identities = 109/145 (75%), Positives = 119/145 (82%)
 Frame = +1

Query: 1   GSLPKAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAG 180
           GS+ KAFE+FNHMR  DERPNE TF+VLLRA  N  LW VGLQ+HGLLVR GLER+K+AG
Sbjct: 128 GSVSKAFEMFNHMRVSDERPNENTFAVLLRACTNRELWSVGLQIHGLLVRCGLEREKFAG 187

Query: 181 SSLVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQG 360
           SSLVYMY  GG+DL DA RVF  LLERDVV+WNVMISGFA  GD  MVQRLFSEMWE QG
Sbjct: 188 SSLVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQG 247

Query: 361 LKPDKSTLASLLKCCSLWVEVKQIH 435
           LKPD+ T ASLLKCCS+  EV QIH
Sbjct: 248 LKPDRITFASLLKCCSVLNEVMQIH 272



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
 Frame = +1

Query: 13  KAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLV 192
           +A   F  M     + +++  S  L+A         G+QVHGL+++ G + D +  S L+
Sbjct: 333 EAVNFFKDMCRQRVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHQNDCFVASVLL 392

Query: 193 YMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSF-MVQRLFSEMWEVQGLKP 369
            +Y + G +L D  ++F  + ++D+V+WN MI   A  G       +LF E+     L+ 
Sbjct: 393 NLYASFG-ELGDVEKLFSRIDDKDIVAWNSMILAQARPGQGCGRCMQLFQELRRTTFLQI 451

Query: 370 DKSTLASLLKCC 405
             +TL ++LK C
Sbjct: 452 QGATLVAVLKSC 463



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
 Frame = +1

Query: 13  KAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGV--GLQVHGLLVRYGLERDKYAGSS 186
           KA E+   M  +DE  N  ++S+ L   A   L  +  G Q+H   ++ G   D Y GSS
Sbjct: 537 KALELCKEM--LDEGINFTSYSLPLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSS 594

Query: 187 LVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLK 366
           ++ MY   GN + ++ +VF + L+ + V++N +ISG+A+ G +     + S++ E  G+ 
Sbjct: 595 IIDMYAKCGN-IEESEKVFDEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKL-EKNGVA 652

Query: 367 PDKSTLASLLKCCS 408
           P+  T  +L+  CS
Sbjct: 653 PNHVTFLALMSACS 666


>gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
 Frame = +1

Query: 1   GSLPKAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAG 180
           GS   A+++F  M+     P++ TF+ +L    NP    +G Q+H L++  GL+ D   G
Sbjct: 566 GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLG 625

Query: 181 SSLVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQ- 357
           ++L+ MY   G+ L DA+ VF  L  R+V+SW  MI GFA+ G+    ++ F   W++Q 
Sbjct: 626 NALINMYIRCGS-LQDAYEVFHSLRHRNVMSWTAMIGGFADQGED---RKAFELFWQMQN 681

Query: 358 -GLKPDKSTLASLLKCC 405
            G KP KST +S+LK C
Sbjct: 682 DGFKPVKSTFSSILKAC 698



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 45/131 (34%), Positives = 75/131 (57%)
 Frame = +1

Query: 13  KAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLV 192
           +A +++  M++   +P   TF  LL A  N S +  G  +H  ++R G++ + +  ++L+
Sbjct: 469 EAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALM 528

Query: 193 YMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPD 372
            MY   G+ +++A  VF     RD++SWN MI+G A  G      +LF EM + +GL+PD
Sbjct: 529 NMYRRCGS-IMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEM-KKEGLEPD 586

Query: 373 KSTLASLLKCC 405
           K T AS+L  C
Sbjct: 587 KITFASVLVGC 597



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
 Frame = +1

Query: 1   GSLPKAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAG 180
           G   +AFE +  MR+     N  T+  +L A +     G G  +H  +   G   D   G
Sbjct: 364 GHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIG 423

Query: 181 SSLVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQG 360
           +SL+ MY   G DL  A  +F  + +RD++SWN +I+G+A   D     +L+ +M + +G
Sbjct: 424 NSLISMYARCG-DLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM-QSEG 481

Query: 361 LKPDKSTLASLLKCC---SLWVEVKQIH 435
           +KP + T   LL  C   S + + K IH
Sbjct: 482 VKPGRVTFLHLLSACTNSSAYSDGKMIH 509



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
 Frame = +1

Query: 13   KAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLV 192
            KAFE+F  M+    +P + TFS +L+A  + +    G +V   ++  G E D   G++L+
Sbjct: 671  KAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALI 730

Query: 193  YMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPD 372
              Y   G+ + DA +VF  +  RD++SWN MI+G+A  G      +   +M E QG+  +
Sbjct: 731  SAYSKSGS-MTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQE-QGVVLN 788

Query: 373  KSTLASLLKCCSLW---VEVKQIH 435
            K +  S+L  CS +    E K++H
Sbjct: 789  KFSFVSILNACSSFSALEEGKRVH 812



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
 Frame = +1

Query: 1   GSLPKAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAG 180
           G   KAF++F  M+     P++ T+  +L A  +P+    G ++H  ++  G +RD    
Sbjct: 162 GFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQ 221

Query: 181 SSLVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQG 360
           +SL+ MY     DL  A +VF  +  RDVVS+N M+  +A          LF +M   +G
Sbjct: 222 NSLLNMY-GKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM-SSEG 279

Query: 361 LKPDKSTLASLLKCC---SLWVEVKQIH 435
           + PDK T  +LL      S+  E K+IH
Sbjct: 280 IPPDKVTYINLLDAFTTPSMLDEGKRIH 307


>ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355497515|gb|AES78718.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 655

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 59/150 (39%), Positives = 86/150 (57%), Gaps = 6/150 (4%)
 Frame = +1

Query: 4   SLPK-AFEIFNHMRAVDERPNEYTFSVLLRAGANPSL--WGVGLQVHGLLVRYGLERDKY 174
           SLP+ AF +FN MR      +E+TFS LL   ++ +L  +  G QVH L++R   + D  
Sbjct: 247 SLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVL 306

Query: 175 AGSSLVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEV 354
             S+L+ MY    N ++DA RVF ++  R+VV+WN MI GF N GD   V +L  EM   
Sbjct: 307 VASALINMYAKSEN-IIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLR- 364

Query: 355 QGLKPDKSTLASLLKCC---SLWVEVKQIH 435
           +G  PD+ T++S++  C   S   E  Q+H
Sbjct: 365 EGFLPDELTISSIISSCGYASAITETLQVH 394



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 41/130 (31%), Positives = 65/130 (50%)
 Frame = +1

Query: 19  FEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLVYM 198
           F  F  M      P+  TF+ L+      +   +G+Q+H   V+ G + D + G +LV +
Sbjct: 152 FSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGL 211

Query: 199 YFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPDKS 378
           Y   G  + +A RVFCD+  RD+V WNVM+S +          R+F+ M  +  +  D+ 
Sbjct: 212 YAKCGF-VENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSM-RLDVVNGDEF 269

Query: 379 TLASLLKCCS 408
           T +SLL   S
Sbjct: 270 TFSSLLSVIS 279


>dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 51/136 (37%), Positives = 77/136 (56%)
 Frame = +1

Query: 1   GSLPKAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAG 180
           GS   A+++F  M+  +  P+  TF+ +L    NP    +G Q+HG +   GL+ D   G
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLG 570

Query: 181 SSLVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQG 360
           ++L+ MY   G+ L DA  VF  L  RDV+SW  MI G A+ G+      LF +M + +G
Sbjct: 571 NALINMYIRCGS-LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM-QNEG 628

Query: 361 LKPDKSTLASLLKCCS 408
            +P KST +S+LK C+
Sbjct: 629 FRPVKSTFSSILKVCT 644



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 46/131 (35%), Positives = 73/131 (55%)
 Frame = +1

Query: 13  KAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLV 192
           +A  ++  M++   +P   TF  LL A AN S +  G  +H  ++R G++ + +  ++L+
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALM 473

Query: 193 YMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPD 372
            MY   G+ L++A  VF     RDV+SWN MI+G A  G      +LF EM + + L+PD
Sbjct: 474 NMYRRCGS-LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM-QNEELEPD 531

Query: 373 KSTLASLLKCC 405
             T AS+L  C
Sbjct: 532 NITFASVLSGC 542



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 46/131 (35%), Positives = 75/131 (57%)
 Frame = +1

Query: 16   AFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLVY 195
            A E    M+  D  PN+++F  LL A ++ S    G +VH  +V+  L+ D   G++L+ 
Sbjct: 718  AVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALIS 777

Query: 196  MYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPDK 375
            MY   G+   +A  VF +++E++VV+WN MI+ +A  G +      F+ M E +G+KPD 
Sbjct: 778  MYAKCGSQ-GEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCM-EKEGIKPDG 835

Query: 376  STLASLLKCCS 408
            ST  S+L  C+
Sbjct: 836  STFTSILSACN 846



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
 Frame = +1

Query: 1   GSLPKAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAG 180
           G   KAF++F  M+     PN+ T+  +L A  +P+    G ++H  +++ G +RD    
Sbjct: 107 GFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ 166

Query: 181 SSLVYMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQG 360
           +SL+ MY   G DL  A +VF  +  RDVVS+N M+  +A          LF +M   +G
Sbjct: 167 NSLLSMYGKCG-DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQM-SSEG 224

Query: 361 LKPDKSTLASLLKCC---SLWVEVKQIH 435
           + PDK T  +LL      S+  E K+IH
Sbjct: 225 ISPDKVTYINLLDAFTTPSMLDEGKRIH 252



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
 Frame = +1

Query: 13  KAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLV 192
           +AFE +  MR+     N  T+  +L A +       G  +H  +   G   D   G++L+
Sbjct: 313 EAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALI 372

Query: 193 YMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPD 372
            MY   G DL  A  +F  + +RD++SWN +I+G+A   D     RL+ +M + +G+KP 
Sbjct: 373 SMYARCG-DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPG 430

Query: 373 KSTLASLLKCC---SLWVEVKQIH 435
           + T   LL  C   S + + K IH
Sbjct: 431 RVTFLHLLSACANSSAYADGKMIH 454



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
 Frame = +1

Query: 13   KAFEIFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLV 192
            KA E+F  M+    RP + TFS +L+   + +    G +V   ++  G E D   G++L+
Sbjct: 616  KAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALI 675

Query: 193  YMYFNGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPD 372
              Y   G+ + DA  VF  +  RD+VSWN +I+G+A  G          +M E Q + P+
Sbjct: 676  SAYSKSGS-MTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQE-QDVVPN 733

Query: 373  KSTLASLLKCCSLW---VEVKQIH 435
            K +  SLL  CS +    E K++H
Sbjct: 734  KFSFVSLLNACSSFSALEEGKRVH 757



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 39/128 (30%), Positives = 62/128 (48%)
 Frame = +1

Query: 25  IFNHMRAVDERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSLVYMYF 204
           +F  M +    P++ T+  LL A   PS+   G ++H L V  GL  D   G++LV M  
Sbjct: 216 LFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCV 275

Query: 205 NGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLKPDKSTL 384
             G D+  A + F    +RDVV +N +I+  A  G +      +  M    G+  +++T 
Sbjct: 276 RCG-DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRM-RSDGVALNRTTY 333

Query: 385 ASLLKCCS 408
            S+L  CS
Sbjct: 334 LSILNACS 341


>ref|XP_002873115.1| EMB175 [Arabidopsis lyrata subsp. lyrata]
           gi|297318952|gb|EFH49374.1| EMB175 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 896

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
 Frame = +1

Query: 13  KAFEIFNHMRAVD-ERPNEYTFSVLLRAGANPSLWGVGLQVHGLLVRYGLERDKYAGSSL 189
           +A ++F  MR     +PNEYTF  +L A    S + +G+Q+HGL+V+ G     + G+SL
Sbjct: 163 EALKVFFRMRKAGIVQPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVGNSL 222

Query: 190 VYMYF-NGGNDLVDAWRVFCDLLERDVVSWNVMISGFANVGDSFMVQRLFSEMWEVQGLK 366
           + +Y  + G+   D  ++F ++  RDV SWN +IS     G S     LF EM  V+GL 
Sbjct: 223 MSLYSKDSGSSCDDVLKLFDEIPHRDVASWNTVISSLVKEGKSHKAFNLFYEMNRVEGLG 282

Query: 367 PDKSTLASLLKCCS 408
            D  TL++LL  C+
Sbjct: 283 VDCFTLSTLLSSCT 296