BLASTX nr result

ID: Glycyrrhiza24_contig00029950 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00029950
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533034.1| PREDICTED: uncharacterized protein LOC100781...   134   6e-30
ref|XP_003627081.1| Protein CHUP1 [Medicago truncatula] gi|35552...   104   9e-21
ref|XP_003543616.1| PREDICTED: protein CHUP1, chloroplastic-like...    92   3e-17
ref|XP_003546609.1| PREDICTED: protein CHUP1, chloroplastic-like...    90   2e-16
ref|XP_004155990.1| PREDICTED: protein CHUP1, chloroplastic-like...    68   7e-10

>ref|XP_003533034.1| PREDICTED: uncharacterized protein LOC100781632 [Glycine max]
          Length = 639

 Score =  134 bits (338), Expect = 6e-30
 Identities = 81/130 (62%), Positives = 93/130 (71%), Gaps = 5/130 (3%)
 Frame = +1

Query: 4   TSQEKPGSQEDSN--SPHFRSSISTGNDTAAEGLRSEYVTPTDISRTSFDFNQTLSTKDE 177
           TS+EK  S+EDSN  SPHF  SISTG     EGLRSE  TP+  SRTSFDFNQT+S K+E
Sbjct: 512 TSKEKSMSREDSNTNSPHFSLSISTGT----EGLRSENATPSATSRTSFDFNQTMSMKEE 567

Query: 178 NRSSSDV---GSSKNFSLMRRGSVDSKFRIDSFSDSSGTEKSNLVKYAEAIKDSSGAPRS 348
           +  +SD    GSSKN S  R  SVD K  + SFS+SSG+EKSNLVKYAEAIKDSSG  + 
Sbjct: 568 SSRNSDSHTPGSSKNLSPRRTRSVDFKNHLRSFSESSGSEKSNLVKYAEAIKDSSGTLKQ 627

Query: 349 KIQRRSASYS 378
           +  RRSAS S
Sbjct: 628 RTHRRSASIS 637


>ref|XP_003627081.1| Protein CHUP1 [Medicago truncatula] gi|355521103|gb|AET01557.1|
           Protein CHUP1 [Medicago truncatula]
          Length = 594

 Score =  104 bits (259), Expect = 9e-21
 Identities = 62/128 (48%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
 Frame = +1

Query: 4   TSQEKPGSQEDSNSPHFRSSISTGNDTAAEGLRSEYVTPTDISRTSFDFNQTLSTKDENR 183
           TS EK  S+EDS +               +GL+SEY T TD+S+ S D N TLS K+E R
Sbjct: 480 TSVEKSRSREDSIN---------------DGLKSEYETLTDMSQNSIDLNSTLSLKEETR 524

Query: 184 SSSDVGSSKNFSLMRRGSVDSKFRIDSFSDSSGTEKSNLVKYAEAIKDSSGA---PRSKI 354
            +SDVGS KNF   +  + D KF   SFSDS  +EKSNL+KYAEA+KDS+ +   P+  +
Sbjct: 525 RNSDVGSLKNFGRRKSVAGDLKFITQSFSDSYASEKSNLIKYAEALKDSTSSETPPKPLL 584

Query: 355 QRRSASYS 378
            RRS+SYS
Sbjct: 585 NRRSSSYS 592


>ref|XP_003543616.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]
          Length = 608

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 62/128 (48%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
 Frame = +1

Query: 4   TSQEKPGSQEDSNSPHFRSSISTGNDTAAEGLRSEYVTPTDISRTSFDFNQTLSTKDENR 183
           +SQEK G Q  SN PH  +S      T  EGLRSE+ TP   SRTS DF+   S K+ +R
Sbjct: 497 SSQEKSGYQV-SNPPHLSTS------TGTEGLRSEFATPIGTSRTSLDFSSLTSVKEGDR 549

Query: 184 SSSD---VGSSKNFSLMRRGSVDSKFRIDSFSDSSGTEKSNLVKYAEAIKDSSGAPRSKI 354
            +SD   VGSS  FS  ++GS         FSDS G E +NL KYAEA+KDSS +   + 
Sbjct: 550 RNSDSIVVGSSNKFSACKKGS---------FSDSLGLENNNLEKYAEALKDSSVSATHER 600

Query: 355 QRRSASYS 378
            RRSAS S
Sbjct: 601 CRRSASCS 608


>ref|XP_003546609.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]
          Length = 595

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 60/128 (46%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
 Frame = +1

Query: 4   TSQEKPGSQEDSNSPHFRSSISTGNDTAAEGLRSEYVTPTDISRTSFDFNQTLSTKDENR 183
           +SQEK G Q DSN       +     T +EGLRSE+ TP   SRTS DF+   S K+ +R
Sbjct: 484 SSQEKSGYQ-DSNP------LCLSTSTRSEGLRSEFATPIATSRTSLDFSSLTSVKEGDR 536

Query: 184 SSSD---VGSSKNFSLMRRGSVDSKFRIDSFSDSSGTEKSNLVKYAEAIKDSSGAPRSKI 354
            +SD   +GSS  FS  ++GS         FSDS G EK+NL KYAEA+KDSS +   + 
Sbjct: 537 RNSDSCVMGSSNKFSTRKKGS---------FSDSLGLEKNNLEKYAEALKDSSVSATHQR 587

Query: 355 QRRSASYS 378
           +RRSAS S
Sbjct: 588 RRRSASCS 595


>ref|XP_004155990.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]
          Length = 624

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
 Frame = +1

Query: 7   SQEKPGSQEDSNSPHFRSSISTG-NDTAAEGLRSEYVTPT-DISRTSFDFNQTLSTKDEN 180
           +++   S EDS+SP + +S STG N T AEG    Y TP  + S  S DF++  S K+++
Sbjct: 491 AEKSAASVEDSDSPCYSTSNSTGTNATRAEGQAIGYATPLLNSSGHSMDFHRLQSQKEDD 550

Query: 181 -------RSSSDVGS-SKNFSLMRRGSVDSKFRIDSFSDSSGTEKSNLVKYAEAIKDSSG 336
                  R +SDVG  +K F +      DS +R  +  D+  TEKS L+KYAE +KD+ G
Sbjct: 551 VKIEDSIRRNSDVGCVNKRFVVGSDQLSDSSYRSQN-QDTESTEKSELMKYAEVLKDTRG 609

Query: 337 APRSKIQRRSAS 372
           A +++  R++AS
Sbjct: 610 A-KNRSHRKTAS 620


Top