BLASTX nr result
ID: Glycyrrhiza24_contig00029622
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00029622
(391 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003610363.1| Pentatricopeptide repeat-containing protein ... 132 1e-47
ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containi... 119 1e-42
ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containi... 117 3e-40
emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera] 114 2e-39
ref|XP_002510620.1| pentatricopeptide repeat-containing protein,... 107 9e-37
>ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 734
Score = 132 bits (333), Expect(2) = 1e-47
Identities = 66/79 (83%), Positives = 72/79 (91%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NEF LTSVLSA TS FV++GRQVHSLAIKNGLL+IVSV N+LVTMY+KCG LDDAVRTF
Sbjct: 218 NEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTF 277
Query: 182 EFSGNKNCITWSAMVTGYA 238
EFSG+KN ITWSAMVTGYA
Sbjct: 278 EFSGDKNSITWSAMVTGYA 296
Score = 82.0 bits (201), Expect(2) = 1e-47
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +3
Query: 243 AQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
AQ GDSDKALKLF MH S VLP+EFTLVGVINACSDLCA++EGKQ+ S
Sbjct: 296 AQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHS 344
Score = 56.6 bits (135), Expect(2) = 2e-13
Identities = 29/78 (37%), Positives = 47/78 (60%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
+EF L V++A + V G+Q+HS A K G + V +++V MY+KCG L DA + F
Sbjct: 319 SEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGF 378
Query: 182 EFSGNKNCITWSAMVTGY 235
E + + W++++TGY
Sbjct: 379 ECVQQPDVVLWTSIITGY 396
Score = 43.9 bits (102), Expect(2) = 2e-13
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 246 QSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
Q+GD + L L+ M V+P E T+ V+ ACS L A+ +GKQ+ +
Sbjct: 398 QNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHA 445
Score = 59.7 bits (143), Expect(2) = 6e-12
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
N L V SA ++ V +G+Q HS+A+K G V V +SL+ MY K G + DA + F
Sbjct: 117 NAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLF 176
Query: 182 EFSGNKNCITWSAMVTGYA 238
+ +N ++W+ M++GYA
Sbjct: 177 DRMPERNTVSWATMISGYA 195
Score = 35.4 bits (80), Expect(2) = 6e-12
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 243 AQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
A S +DKA+++F M R E + EF L V++A + + G+QV S
Sbjct: 195 ASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHS 243
Score = 58.2 bits (139), Expect(2) = 1e-10
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NE + SVL A +S + G+Q+H+ IK G V + ++L MY+KCG LDD F
Sbjct: 420 NELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIF 479
Query: 182 EFSGNKNCITWSAMVTG 232
+++ I+W+AM++G
Sbjct: 480 WRMPSRDVISWNAMISG 496
Score = 32.3 bits (72), Expect(2) = 1e-10
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 240 IAQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEG 374
++Q+G +KAL+LF M + P T V +++ACS + + G
Sbjct: 497 LSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRG 541
>ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Glycine max]
Length = 775
Score = 119 bits (298), Expect(2) = 1e-42
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NEFV TSVLSA T + V++GRQVHSLA+KNGL+ IVSV N+LVTMY KCG L+DA++TF
Sbjct: 218 NEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTF 277
Query: 182 EFSGNKNCITWSAMVTGYA 238
E SGNKN ITWSAMVTG+A
Sbjct: 278 ELSGNKNSITWSAMVTGFA 296
Score = 79.0 bits (193), Expect(2) = 1e-42
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +3
Query: 243 AQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQV 383
AQ GDSDKALKLFY MH+S LP+EFTLVGVINACSD CAI+EG+Q+
Sbjct: 296 AQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQM 342
Score = 55.5 bits (132), Expect(2) = 4e-13
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
+EF L V++A + + GRQ+H ++K G + V ++LV MY+KCG + DA + F
Sbjct: 319 SEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGF 378
Query: 182 EFSGNKNCITWSAMVTGY 235
E + + W++++TGY
Sbjct: 379 ECIQQPDVVLWTSIITGY 396
Score = 43.5 bits (101), Expect(2) = 4e-13
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 246 QSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
Q+GD + AL L+ M V+P + T+ V+ ACS+L A+ +GKQ+ +
Sbjct: 398 QNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHA 445
Score = 54.3 bits (129), Expect(2) = 3e-08
Identities = 26/77 (33%), Positives = 45/77 (58%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
N+ + SVL A ++ + G+Q+H+ IK + + ++L MY+KCG LDD R F
Sbjct: 420 NDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIF 479
Query: 182 EFSGNKNCITWSAMVTG 232
++ I+W+AM++G
Sbjct: 480 WRMPARDVISWNAMISG 496
Score = 28.1 bits (61), Expect(2) = 3e-08
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 240 IAQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEG 374
++Q+G ++ L+LF M P T V +++ACS + + G
Sbjct: 497 LSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRG 541
Score = 54.3 bits (129), Expect = 1e-05
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
N LT V +A ++ +GRQ H+LA+K V +SL+ MY K G + +A F
Sbjct: 115 NAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLF 174
Query: 182 EFSGNKNCITWSAMVTGYA 238
+ +N ++W+ M++GYA
Sbjct: 175 DEMPERNAVSWATMISGYA 193
>ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera] gi|302141693|emb|CBI18896.3| unnamed
protein product [Vitis vinifera]
Length = 703
Score = 117 bits (294), Expect(2) = 3e-40
Identities = 56/79 (70%), Positives = 68/79 (86%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NEFV TSVLSA T E V++G+Q+H +A+KNGLLSIVSV N+LVTMY+KCG LDDA++TF
Sbjct: 208 NEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTF 267
Query: 182 EFSGNKNCITWSAMVTGYA 238
E S +KN ITWSAM+TGYA
Sbjct: 268 ETSSDKNSITWSAMITGYA 286
Score = 72.8 bits (177), Expect(2) = 3e-40
Identities = 37/47 (78%), Positives = 39/47 (82%)
Frame = +3
Query: 243 AQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQV 383
AQSGDSDKALKLF SMH S + P+EFT VGVINACSDL A EGKQV
Sbjct: 286 AQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQV 332
Score = 53.5 bits (127), Expect(2) = 3e-13
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
+EF V++A + G+QVH +K G S + V +LV MY+KC + DA + F
Sbjct: 309 SEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGF 368
Query: 182 EFSGNKNCITWSAMVTGY 235
++ + + W++M+ GY
Sbjct: 369 DYLQEPDIVLWTSMIGGY 386
Score = 45.8 bits (107), Expect(2) = 3e-13
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 246 QSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
Q+G+++ AL L+ M +LP E T+ V+ ACS L A+ +GKQ+ +
Sbjct: 388 QNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHA 435
Score = 58.2 bits (139), Expect(2) = 7e-10
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NE + SVL A +S + G+Q+H+ +K G V + ++L TMY+KCG L D F
Sbjct: 410 NELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVF 469
Query: 182 EFSGNKNCITWSAMVTG 232
++ I+W+AM++G
Sbjct: 470 RRMPARDVISWNAMISG 486
Score = 30.0 bits (66), Expect(2) = 7e-10
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 240 IAQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEG 374
++Q+G +AL+LF M P T V +++ACS + + G
Sbjct: 487 LSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG 531
>emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 114 bits (286), Expect(2) = 2e-39
Identities = 55/79 (69%), Positives = 67/79 (84%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NEFV TSVLSA T E V++G+Q+H +A+KNGLLSIVSV N+LVTMY+KCG LDDA++TF
Sbjct: 208 NEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTF 267
Query: 182 EFSGNKNCITWSAMVTGYA 238
E S +KN ITWSAM+TG A
Sbjct: 268 ETSSDKNSITWSAMITGXA 286
Score = 72.8 bits (177), Expect(2) = 2e-39
Identities = 37/47 (78%), Positives = 39/47 (82%)
Frame = +3
Query: 243 AQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQV 383
AQSGDSDKALKLF SMH S + P+EFT VGVINACSDL A EGKQV
Sbjct: 286 AQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQV 332
Score = 53.5 bits (127), Expect(2) = 3e-13
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
+EF V++A + G+QVH +K G S + V +LV MY+KC + DA + F
Sbjct: 309 SEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGF 368
Query: 182 EFSGNKNCITWSAMVTGY 235
++ + + W++M+ GY
Sbjct: 369 DYLQEPDIVLWTSMIGGY 386
Score = 45.8 bits (107), Expect(2) = 3e-13
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 246 QSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
Q+G+++ AL L+ M +LP E T+ V+ ACS L A+ +GKQ+ +
Sbjct: 388 QNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHA 435
Score = 58.2 bits (139), Expect(2) = 7e-10
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NE + SVL A +S + G+Q+H+ +K G V + ++L TMY+KCG L D F
Sbjct: 410 NELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVF 469
Query: 182 EFSGNKNCITWSAMVTG 232
++ I+W+AM++G
Sbjct: 470 RRMPARDVISWNAMISG 486
Score = 30.0 bits (66), Expect(2) = 7e-10
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 240 IAQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEG 374
++Q+G +AL+LF M P T V +++ACS + + G
Sbjct: 487 LSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG 531
>ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551321|gb|EEF52807.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 708
Score = 107 bits (267), Expect(2) = 9e-37
Identities = 50/79 (63%), Positives = 62/79 (78%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NEF TSVLSA EFV SG+Q+H LA+K GLL +S+ N+LVTMY+KCG LDD+++ F
Sbjct: 211 NEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVF 270
Query: 182 EFSGNKNCITWSAMVTGYA 238
E S +KN ITWSAM+TGYA
Sbjct: 271 EMSNDKNSITWSAMITGYA 289
Score = 71.2 bits (173), Expect(2) = 9e-37
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = +3
Query: 243 AQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
AQSGDS KALKLF MH + + P+EFTLVGV+NACSD CA+ EGKQV +
Sbjct: 289 AQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHN 337
Score = 55.5 bits (132), Expect(2) = 3e-13
Identities = 27/78 (34%), Positives = 45/78 (57%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
+EF L VL+A + V G+QVH+ +K G S + + +LV MY+K G +DA + F
Sbjct: 312 SEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGF 371
Query: 182 EFSGNKNCITWSAMVTGY 235
+ + + W++M+ GY
Sbjct: 372 NYLQQPDLVLWTSMIAGY 389
Score = 44.3 bits (103), Expect(2) = 3e-13
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +3
Query: 246 QSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
Q+G+++ AL L+ M +LP E T+ V+ ACS+L A +G+Q+ +
Sbjct: 391 QNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHA 438
Score = 59.7 bits (143), Expect(2) = 1e-11
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +2
Query: 2 NEFVLTSVLSAFTSHEFVHSGRQVHSLAIKNGLLSIVSVENSLVTMYSKCGRLDDAVRTF 181
NE + SVL A ++ GRQ+H+ IK GL V++ ++L TMY+KCG L++ F
Sbjct: 413 NELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVF 472
Query: 182 EFSGNKNCITWSAMVTG 232
++ I+W+AM++G
Sbjct: 473 RRMPERDIISWNAMISG 489
Score = 34.3 bits (77), Expect(2) = 1e-11
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 240 IAQSGDSDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEG 374
++Q+G +AL+LF M + + P + T V V++ACS + + G
Sbjct: 490 LSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSG 534
Score = 46.6 bits (109), Expect(2) = 1e-06
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 26 LSAFTSHEFVHSGRQVHSLAIK-NGLLSIVSVENSLVTMYSKCGRLDDAVRTFEFSGNKN 202
L FT + + GR +H+ IK S + + NSL+ Y+KC L A F+ NK+
Sbjct: 14 LVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKD 73
Query: 203 CITWSAMVTGYA 238
I+W+ ++ GY+
Sbjct: 74 VISWNCLINGYS 85
Score = 30.4 bits (67), Expect(2) = 1e-06
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 258 SDKALKLFYSMHRSEVLPTEFTLVGVINACSDLCAILEGKQVRS 389
S ++LF M +LP T G+ A S+L +I G+Q +
Sbjct: 92 SSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHA 135