BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00029471
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   107   3e-42
ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arab...    87   1e-28
ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Popu...    90   6e-28
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...    86   2e-27
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...    87   2e-27

>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
           max]
          Length = 953

 Score =  107 bits (268), Expect(2) = 3e-42
 Identities = 50/71 (70%), Positives = 59/71 (83%)
 Frame = -3

Query: 215 GFLLMNLFLRNHLSVLAKMEKERLKGGKLYLPNCFYLMGTVDPTGCLEANQVCIIHENGQ 36
           G  L   FL++HLS  A+ EK++L+GGKLY+P+CFYLMGTVDPTG L+ NQVCIIHEN Q
Sbjct: 538 GIPLDEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQ 597

Query: 35  ITGDVLVYRNP 3
           I GDVLVYRNP
Sbjct: 598 IVGDVLVYRNP 608



 Score = 89.4 bits (220), Expect(2) = 3e-42
 Identities = 41/50 (82%), Positives = 47/50 (94%)
 Frame = -2

Query: 342 MDVLKSNLEDADHVYSNKRAALRASVNHGEMDEYNAAGMILCGIPLDEPF 193
           MD+L+SN+EDA+HVYSNKR+ALRAS+N GE DEYNAA MILCGIPLDEPF
Sbjct: 496 MDLLRSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPF 545


>ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
           gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
           Full=Probable RNA-dependent RNA polymerase 5;
           Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
           5 gi|330251850|gb|AEC06944.1| RNA-dependent RNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 977

 Score = 86.7 bits (213), Expect(2) = 1e-28
 Identities = 42/72 (58%), Positives = 54/72 (75%)
 Frame = -3

Query: 218 VGFLLMNLFLRNHLSVLAKMEKERLKGGKLYLPNCFYLMGTVDPTGCLEANQVCIIHENG 39
           VG  L    L+N+LS+L K EK  LK GKL +   +YLMGTVDPTG L+ ++VC+I E+G
Sbjct: 564 VGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESG 623

Query: 38  QITGDVLVYRNP 3
           QI+G+VLVYRNP
Sbjct: 624 QISGEVLVYRNP 635



 Score = 64.7 bits (156), Expect(2) = 1e-28
 Identities = 29/49 (59%), Positives = 40/49 (81%)
 Frame = -2

Query: 342 MDVLKSNLEDADHVYSNKRAALRASVNHGEMDEYNAAGMILCGIPLDEP 196
           +D+L + LE++  ++ NKRAAL A++N+GEMD+ NAA MIL GIPLDEP
Sbjct: 523 LDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDEP 571


>ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
           gi|222852929|gb|EEE90476.1| hypothetical protein
           POPTRDRAFT_562705 [Populus trichocarpa]
          Length = 406

 Score = 89.7 bits (221), Expect(2) = 6e-28
 Identities = 41/71 (57%), Positives = 56/71 (78%)
 Frame = -3

Query: 215 GFLLMNLFLRNHLSVLAKMEKERLKGGKLYLPNCFYLMGTVDPTGCLEANQVCIIHENGQ 36
           G  L   +L++HLS+L K EK+ LKGGK+ +P  +YLMGT DPTG LE+++VCII + GQ
Sbjct: 267 GIPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQ 326

Query: 35  ITGDVLVYRNP 3
           ++G+VLVYRNP
Sbjct: 327 VSGEVLVYRNP 337



 Score = 59.3 bits (142), Expect(2) = 6e-28
 Identities = 27/50 (54%), Positives = 38/50 (76%)
 Frame = -2

Query: 342 MDVLKSNLEDADHVYSNKRAALRASVNHGEMDEYNAAGMILCGIPLDEPF 193
           M +L + LEDA  + SNK+AALR ++N+G+MD+   A MI CGIPL+EP+
Sbjct: 225 MGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPY 274


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
           RNA polymerase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 981

 Score = 86.3 bits (212), Expect(2) = 2e-27
 Identities = 42/72 (58%), Positives = 54/72 (75%)
 Frame = -3

Query: 218 VGFLLMNLFLRNHLSVLAKMEKERLKGGKLYLPNCFYLMGTVDPTGCLEANQVCIIHENG 39
           VG  L    L+NHLS+L K EK  LK G+L +   +YLMGTVDPTG L+ ++VC+I E+G
Sbjct: 568 VGIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESG 627

Query: 38  QITGDVLVYRNP 3
           QI+G+VLVYRNP
Sbjct: 628 QISGEVLVYRNP 639



 Score = 61.2 bits (147), Expect(2) = 2e-27
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = -2

Query: 342 MDVLKSNLEDADHVYSNKRAALRASVNHGEMDEYNAAGMILCGIPLDEP 196
           +D+L + LE++  ++ NK AAL  ++N+GEMD+ NAA MIL GIPLDEP
Sbjct: 527 LDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVGIPLDEP 575


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
           sativus]
          Length = 1056

 Score = 87.0 bits (214), Expect(2) = 2e-27
 Identities = 42/71 (59%), Positives = 52/71 (73%)
 Frame = -3

Query: 215 GFLLMNLFLRNHLSVLAKMEKERLKGGKLYLPNCFYLMGTVDPTGCLEANQVCIIHENGQ 36
           G  L   +L+  LSVL K EK+ LK G+L++P C+YLMGTVDPT  LE+ +VC+I  NGQ
Sbjct: 644 GIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQ 703

Query: 35  ITGDVLVYRNP 3
           I G VLVYRNP
Sbjct: 704 INGKVLVYRNP 714



 Score = 60.1 bits (144), Expect(2) = 2e-27
 Identities = 28/50 (56%), Positives = 38/50 (76%)
 Frame = -2

Query: 342 MDVLKSNLEDADHVYSNKRAALRASVNHGEMDEYNAAGMILCGIPLDEPF 193
           M++L   L+D   V+S+KRAALR S+N+GEMD++  A MIL GIPLDE +
Sbjct: 602 MNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESY 651