BLASTX nr result

ID: Glycyrrhiza24_contig00029248 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00029248
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540760.1| PREDICTED: uncharacterized protein LOC100792...    87   1e-15
ref|XP_003539202.1| PREDICTED: uncharacterized protein LOC100813...    87   1e-15
ref|XP_003606359.1| Chromatin remodeling complex subunit [Medica...    67   2e-09

>ref|XP_003540760.1| PREDICTED: uncharacterized protein LOC100792516 [Glycine max]
          Length = 2010

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 55/115 (47%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
 Frame = -1

Query: 346  IPDGDIPVTVPENSHAVADCHKDTEPSTNAVLVDKSTTCDQEEGVPRTVTKYTLSEETLA 167
            +PD  IPV  PENS+ VA+C       T++V+V+K+   DQ EGV RT+T+ +LS ET  
Sbjct: 1313 LPDEQIPVLEPENSNKVAECQL-----TDSVVVNKNAISDQLEGVCRTMTENSLSLETPV 1367

Query: 166  SGSVN-VMEPLERGQQLSSVESPSNQDSAGEMLNSSEQVELASGSEDVLPANQPI 5
            S  V+ +MEPLE+   LSSVESP + D+A EM N+     L S   D++PANQ I
Sbjct: 1368 SRPVDDLMEPLEQVHSLSSVESPPDPDTAREMKNT-----LVSSPVDIVPANQSI 1417



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
 Frame = -1

Query: 253  LVDKSTTCDQEEGVPRTVTKYTLSEETLASGSVN-VMEPLERGQQLSSVESPSNQDSAGE 77
            +V  ++  D++EGV RT+T+ +LS ET  S  V+ +M PLE+ Q LSSVESP ++D+A E
Sbjct: 1478 VVQHASNSDRQEGVCRTMTENSLSLETPVSRPVDDLMVPLEQVQPLSSVESPPDRDTARE 1537

Query: 76   MLNSSEQVELASGSEDVLPANQ 11
            M N      L S S D++PANQ
Sbjct: 1538 MQNI-----LVSSSVDIVPANQ 1554


>ref|XP_003539202.1| PREDICTED: uncharacterized protein LOC100813071 [Glycine max]
          Length = 2002

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 55/115 (47%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = -1

Query: 346  IPDGDIPVTVPENSHAVADCHKDTEPSTNAVLVDKSTTCDQEEGVPRTVTKYTLSEETLA 167
            +PD  IPV VPENS  VA C       T++ +V K+   DQ+EGV RT+T+ +LS+ET  
Sbjct: 1308 LPDEQIPVLVPENSDKVARCQL-----TDSAVVKKNAISDQQEGVCRTMTENSLSQETPV 1362

Query: 166  SGSV-NVMEPLERGQQLSSVESPSNQDSAGEMLNSSEQVELASGSEDVLPANQPI 5
            S +V ++MEPLE  Q LSSVESP + D+A EM N+     L S   D++P NQ I
Sbjct: 1363 SRTVHDLMEPLEPLQSLSSVESPPDPDTAREMPNT-----LISSPVDIVPDNQSI 1412



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
 Frame = -1

Query: 253  LVDKSTTCDQEEGVPRTVTKYTLSEETLASGSVN-VMEPLERGQQLSSVESPSNQDSAGE 77
            +V +++  DQ+EG  RT+T+ +LS ET  S  V+ +MEPLE+ Q LSSVESP ++D+A E
Sbjct: 1469 VVQQASYSDQQEGACRTMTENSLSLETPVSRPVDDLMEPLEQVQPLSSVESPPDRDTARE 1528

Query: 76   MLNSSEQVELASGSEDVLPANQPI 5
            M N      L S S D +P NQ I
Sbjct: 1529 MQNI-----LVSSSVDFVPDNQSI 1547


>ref|XP_003606359.1| Chromatin remodeling complex subunit [Medicago truncatula]
           gi|355507414|gb|AES88556.1| Chromatin remodeling complex
           subunit [Medicago truncatula]
          Length = 1283

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
 Frame = -1

Query: 346 IPDGDIPVTVPENSHAVADCHKDTEPSTNAVLVDKSTTCDQEEGVPRTVTKYTLSEETLA 167
           I DG IPVT+PENSH  A+C        + + V++STT D +E V RT+ + T S+ET  
Sbjct: 558 ITDGQIPVTMPENSHEEAECE-----LVDNMEVNESTTPDNQEVVQRTIAENTSSQETSV 612

Query: 166 SGSVNVMEPLE--RGQQLSSVESPSNQDSAGEMLNSSEQVELASGSEDVLPANQPI 5
           S + + +EP E  + Q LSSVESP +           E ++    +E   P NQ +
Sbjct: 613 SRARDSIEPREQVQVQPLSSVESPLSLPENSHEEAEYELIDNMEVNESTTPDNQEV 668


Top