BLASTX nr result

ID: Glycyrrhiza24_contig00029071 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00029071
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003534406.1| PREDICTED: structural maintenance of chromos...   167   8e-40
ref|XP_002510971.1| structural maintenance of chromosomes 6 smc6...   164   5e-39
ref|XP_004146918.1| PREDICTED: structural maintenance of chromos...   161   5e-38
emb|CBI38567.3| unnamed protein product [Vitis vinifera]              161   5e-38
ref|XP_002278113.1| PREDICTED: structural maintenance of chromos...   161   5e-38

>ref|XP_003534406.1| PREDICTED: structural maintenance of chromosomes protein 6-like
            [Glycine max]
          Length = 1057

 Score =  167 bits (423), Expect = 8e-40
 Identities = 82/88 (93%), Positives = 85/88 (96%)
 Frame = -2

Query: 369  TRGLSGGERSFSTMCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAQGSQ 190
            TRGLSGGERSFST+CFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEA GSQ
Sbjct: 970  TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQ 1029

Query: 189  WIFITPHETSMVKNGDRIKKMQMAAPRS 106
            WIFITPH+TS V+ GDRIKKMQMAAPRS
Sbjct: 1030 WIFITPHDTSSVRAGDRIKKMQMAAPRS 1057


>ref|XP_002510971.1| structural maintenance of chromosomes 6 smc6, putative [Ricinus
            communis] gi|223550086|gb|EEF51573.1| structural
            maintenance of chromosomes 6 smc6, putative [Ricinus
            communis]
          Length = 1058

 Score =  164 bits (416), Expect = 5e-39
 Identities = 81/88 (92%), Positives = 84/88 (95%)
 Frame = -2

Query: 369  TRGLSGGERSFSTMCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAQGSQ 190
            TRGLSGGERSFST+CFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA AQGSQ
Sbjct: 971  TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQ 1030

Query: 189  WIFITPHETSMVKNGDRIKKMQMAAPRS 106
            WIFITPH+ SMVK G+RIKK QMAAPRS
Sbjct: 1031 WIFITPHDISMVKQGERIKKQQMAAPRS 1058


>ref|XP_004146918.1| PREDICTED: structural maintenance of chromosomes protein 6-like
            [Cucumis sativus]
          Length = 1052

 Score =  161 bits (408), Expect = 5e-38
 Identities = 79/88 (89%), Positives = 83/88 (94%)
 Frame = -2

Query: 369  TRGLSGGERSFSTMCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAQGSQ 190
            TRGLSGGERSFST+CFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA AQGSQ
Sbjct: 965  TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQ 1024

Query: 189  WIFITPHETSMVKNGDRIKKMQMAAPRS 106
            WIFITPH+  +VK G+RIKK QMAAPRS
Sbjct: 1025 WIFITPHDIGVVKQGERIKKQQMAAPRS 1052


>emb|CBI38567.3| unnamed protein product [Vitis vinifera]
          Length = 1027

 Score =  161 bits (408), Expect = 5e-38
 Identities = 79/88 (89%), Positives = 84/88 (95%)
 Frame = -2

Query: 369  TRGLSGGERSFSTMCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAQGSQ 190
            TRGLSGGERSFST+CFALALHEMTE+PFRAMDEFDVFMDAVSRKISLDTLV+FA AQGSQ
Sbjct: 940  TRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVNFALAQGSQ 999

Query: 189  WIFITPHETSMVKNGDRIKKMQMAAPRS 106
            WIFITPH+ SMVK G+RIKK QMAAPRS
Sbjct: 1000 WIFITPHDISMVKQGERIKKQQMAAPRS 1027


>ref|XP_002278113.1| PREDICTED: structural maintenance of chromosomes protein 6-like
            [Vitis vinifera]
          Length = 1057

 Score =  161 bits (408), Expect = 5e-38
 Identities = 79/88 (89%), Positives = 84/88 (95%)
 Frame = -2

Query: 369  TRGLSGGERSFSTMCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAQGSQ 190
            TRGLSGGERSFST+CFALALHEMTE+PFRAMDEFDVFMDAVSRKISLDTLV+FA AQGSQ
Sbjct: 970  TRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVNFALAQGSQ 1029

Query: 189  WIFITPHETSMVKNGDRIKKMQMAAPRS 106
            WIFITPH+ SMVK G+RIKK QMAAPRS
Sbjct: 1030 WIFITPHDISMVKQGERIKKQQMAAPRS 1057


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