BLASTX nr result

ID: Glycyrrhiza24_contig00028836 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00028836
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541512.1| PREDICTED: glutamate receptor 2.7-like [Glyc...   127   1e-27
ref|XP_003593704.1| Glutamate receptor 2.7 [Medicago truncatula]...   118   4e-25
ref|XP_003528477.1| PREDICTED: glutamate receptor 2.7-like [Glyc...   109   2e-22
ref|XP_002316841.1| glutamate-gated kainate-type ion channel rec...    99   4e-19
ref|XP_002305092.1| glutamate-gated kainate-type ion channel rec...    99   5e-19

>ref|XP_003541512.1| PREDICTED: glutamate receptor 2.7-like [Glycine max]
          Length = 816

 Score =  127 bits (319), Expect = 1e-27
 Identities = 62/84 (73%), Positives = 70/84 (83%)
 Frame = +1

Query: 4   RWPSLVRLANNGTAYVKCIADMVYVYGWHRVVAIYEDNAFGGDSGMLSLLSEALQDVGSM 183
           RWP  VR+ANNGTAY KC+AD+V+ YGW RVV IYED    GD  ML+LLSE LQ+VGSM
Sbjct: 108 RWPFSVRMANNGTAYAKCVADVVHAYGWQRVVVIYED----GDYEMLALLSETLQEVGSM 163

Query: 184 IEYRLALPSLNHLPNPGEFIREEL 255
           IEYRLALPS ++LPNPGEFIREEL
Sbjct: 164 IEYRLALPSPSYLPNPGEFIREEL 187


>ref|XP_003593704.1| Glutamate receptor 2.7 [Medicago truncatula]
           gi|355482752|gb|AES63955.1| Glutamate receptor 2.7
           [Medicago truncatula]
          Length = 1083

 Score =  118 bits (296), Expect = 4e-25
 Identities = 54/84 (64%), Positives = 67/84 (79%)
 Frame = +1

Query: 4   RWPSLVRLANNGTAYVKCIADMVYVYGWHRVVAIYEDNAFGGDSGMLSLLSEALQDVGSM 183
           RWP LVRLAN GTAY+KCIA++V  Y W +VV IYEDN +GGD GML+LL+EALQDV SM
Sbjct: 147 RWPFLVRLANTGTAYIKCIAEIVQAYSWKKVVVIYEDNGYGGDYGMLALLAEALQDVDSM 206

Query: 184 IEYRLALPSLNHLPNPGEFIREEL 255
           IE+RL LP ++ L +P E + EE+
Sbjct: 207 IEHRLVLPPISSLQDPEELVSEEM 230



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 4    RWPSLVRLANNGTAYVKCIADMVYVYGWHRVVAI 105
            RWP LVRLANNGT Y+KCIA++V+ Y W RVV I
Sbjct: 1049 RWPFLVRLANNGTTYIKCIAEIVHAYCWKRVVVI 1082


>ref|XP_003528477.1| PREDICTED: glutamate receptor 2.7-like [Glycine max]
          Length = 1033

 Score =  109 bits (273), Expect = 2e-22
 Identities = 57/85 (67%), Positives = 66/85 (77%)
 Frame = +1

Query: 4   RWPSLVRLANNGTAYVKCIADMVYVYGWHRVVAIYEDNAFGGDSGMLSLLSEALQDVGSM 183
           R P  VR+AN+GTAY KC+ADMV VY W RVV I E+    GD  ML+LLSE LQ+VGSM
Sbjct: 276 RLPFSVRMANDGTAYAKCVADMVRVYSWQRVVVINEE----GDYEMLALLSETLQEVGSM 331

Query: 184 IEYRLALPSLNHLPNPGEFIREELS 258
           IEYRLALPS ++  NPGEFIREEL+
Sbjct: 332 IEYRLALPSPSYRTNPGEFIREELN 356


>ref|XP_002316841.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222859906|gb|EEE97453.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 401

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 44/85 (51%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   IRWPSLVRLANNGTAYVKCIADMVYVYGWHRVVAIYEDNAFGGDSGMLSLLSEALQDVGS 180
           +RWP L+R+A++G+  + CIA +V+ Y W RVV IYED+  G +SG L+LL+EALQ+VGS
Sbjct: 81  LRWPFLIRMASDGSEQMSCIAALVHSYNWKRVVVIYEDDVLGSESGNLALLTEALQEVGS 140

Query: 181 MIEYRLALPSLNHLPNPGEFIREEL 255
            IEYRL LP  + L +P + +++EL
Sbjct: 141 EIEYRLVLPPFSFLTDPKDVVQDEL 165


>ref|XP_002305092.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222848056|gb|EEE85603.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 942

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 44/85 (51%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   IRWPSLVRLANNGTAYVKCIADMVYVYGWHRVVAIYEDNAFGGDSGMLSLLSEALQDVGS 180
           +RWP L+R+A++G+  ++CIA +V  + W +VV IYEDN +GG+SG L+LLSEALQ+VGS
Sbjct: 160 LRWPFLIRMASDGSEQMRCIAALVRCHNWRKVVVIYEDNVYGGESGNLALLSEALQEVGS 219

Query: 181 MIEYRLALPSLNHLPNPGEFIREEL 255
            IEYRL LP  +   +P + ++ EL
Sbjct: 220 EIEYRLVLPPFSLSTDPEDVVQHEL 244


Top