BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00028798
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal doma...   170   1e-40
ref|XP_003542763.1| PREDICTED: RNA polymerase II C-terminal doma...   169   2e-40
ref|XP_003543063.1| PREDICTED: RNA polymerase II C-terminal doma...   151   6e-35
ref|XP_003545893.1| PREDICTED: RNA polymerase II C-terminal doma...   147   9e-34
ref|XP_002519032.1| double-stranded RNA binding protein, putativ...   127   9e-28

>ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           1-like [Glycine max]
          Length = 954

 Score =  170 bits (430), Expect = 1e-40
 Identities = 87/102 (85%), Positives = 92/102 (90%)
 Frame = -3

Query: 306 DVSNYLVSEGDGSASNGNRDSFLFDGMADAEVERKLKDAISAASAIPLTTANVDPRLTSS 127
           DVSNYLVSE DGS SNG+RD FLFDGMADAEVERKLKDA+SAAS IP+TTAN+DPRLT S
Sbjct: 417 DVSNYLVSEDDGSISNGHRDPFLFDGMADAEVERKLKDALSAASTIPVTTANLDPRLT-S 475

Query: 126 LQYTMQSSGSVPPPTAQASVMQFSHVQFPQPATLVKPMGQVA 1
           LQYTM  SGSVPPPTAQAS+M F HVQFPQPATLVKPMGQ A
Sbjct: 476 LQYTMVPSGSVPPPTAQASMMPFPHVQFPQPATLVKPMGQAA 517


>ref|XP_003542763.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           1-like [Glycine max]
          Length = 960

 Score =  169 bits (428), Expect = 2e-40
 Identities = 86/102 (84%), Positives = 91/102 (89%)
 Frame = -3

Query: 306 DVSNYLVSEGDGSASNGNRDSFLFDGMADAEVERKLKDAISAASAIPLTTANVDPRLTSS 127
           DVSNYLVSE DGS SNGNRD FLFDGMADAEVERKLKDA++AAS  P+TTAN+DPRLT S
Sbjct: 423 DVSNYLVSEDDGSISNGNRDPFLFDGMADAEVERKLKDALAAASTFPVTTANLDPRLT-S 481

Query: 126 LQYTMQSSGSVPPPTAQASVMQFSHVQFPQPATLVKPMGQVA 1
           LQYTM  SGSVPPPTAQAS+M F HVQFPQPATLVKPMGQ A
Sbjct: 482 LQYTMVPSGSVPPPTAQASMMPFPHVQFPQPATLVKPMGQAA 523


>ref|XP_003543063.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           1-like [Glycine max]
          Length = 960

 Score =  151 bits (381), Expect = 6e-35
 Identities = 81/104 (77%), Positives = 89/104 (85%), Gaps = 3/104 (2%)
 Frame = -3

Query: 306 DVSNYLVSEGDGSASNGNRDSFLFDGMADAEVERKLKDAISAASAIPLTTANVDPRL--T 133
           DVSNYLVSE D SASNGN++  LFDGMADAEVER+LKDAISA+S I   TAN+DPRL  T
Sbjct: 417 DVSNYLVSEDDASASNGNKNLLLFDGMADAEVERRLKDAISASSTILALTANIDPRLAFT 476

Query: 132 SSLQYTM-QSSGSVPPPTAQASVMQFSHVQFPQPATLVKPMGQV 4
           SSLQYTM  SSG+VPPPTAQASV+QF +VQFPQP TLVKPM QV
Sbjct: 477 SSLQYTMVSSSGTVPPPTAQASVVQFGNVQFPQPNTLVKPMSQV 520


>ref|XP_003545893.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           1-like [Glycine max]
          Length = 958

 Score =  147 bits (371), Expect = 9e-34
 Identities = 77/104 (74%), Positives = 88/104 (84%), Gaps = 3/104 (2%)
 Frame = -3

Query: 306 DVSNYLVSEGDGSASNGNRDSFLFDGMADAEVERKLKDAISAASAIPLTTANVDPRL--T 133
           DVSNYLVSE D SASNGN++  LFDGMADAEVER+LKDAISA+S +P  T N+DPRL   
Sbjct: 418 DVSNYLVSEDDASASNGNKNLLLFDGMADAEVERRLKDAISASSTVPAMTTNLDPRLAFN 477

Query: 132 SSLQYTM-QSSGSVPPPTAQASVMQFSHVQFPQPATLVKPMGQV 4
           SSLQYTM  SSG+VPPPTAQAS++QF +VQFPQP TLVKP+ QV
Sbjct: 478 SSLQYTMVSSSGTVPPPTAQASIVQFGNVQFPQPNTLVKPICQV 521


>ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis]
           gi|223541695|gb|EEF43243.1| double-stranded RNA binding
           protein, putative [Ricinus communis]
          Length = 978

 Score =  127 bits (319), Expect = 9e-28
 Identities = 64/101 (63%), Positives = 75/101 (74%)
 Frame = -3

Query: 306 DVSNYLVSEGDGSASNGNRDSFLFDGMADAEVERKLKDAISAASAIPLTTANVDPRLTSS 127
           DVSNYLV E D   SNGNRD   FDGMADAEVE++LK+AIS +SA P T AN+D RL   
Sbjct: 440 DVSNYLVPEDDAFTSNGNRDPLSFDGMADAEVEKRLKEAISISSAFPSTVANLDARLVPP 499

Query: 126 LQYTMQSSGSVPPPTAQASVMQFSHVQFPQPATLVKPMGQV 4
           LQYTM SS S+P PT+Q +V+ F  +Q PQ A LVKP+GQV
Sbjct: 500 LQYTMASSSSIPVPTSQPAVVTFPSMQLPQAAPLVKPLGQV 540