BLASTX nr result

ID: Glycyrrhiza24_contig00028783 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00028783
         (836 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519572.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   516   e-144
ref|XP_003544936.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   491   e-137
ref|XP_003617524.1| ATP-dependent RNA helicase DBP4 [Medicago tr...   479   e-133
ref|XP_002319844.1| predicted protein [Populus trichocarpa] gi|2...   384   e-104
ref|XP_002522952.1| dead box ATP-dependent RNA helicase, putativ...   372   e-101

>ref|XP_003519572.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max]
          Length = 746

 Score =  516 bits (1328), Expect = e-144
 Identities = 259/278 (93%), Positives = 271/278 (97%)
 Frame = +3

Query: 3    IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV 182
            IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV
Sbjct: 307  IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV 366

Query: 183  LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQML 362
            LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKS GKSVLFLLPSEIQML
Sbjct: 367  LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSEIQML 426

Query: 363  EKLKASKVPVHFNKPRKELLQPVSSLLASLLVKYPELQHRAQRAFVTYLRSIHIQKDKEI 542
            EKLKA+KVPVHFNKPRKELLQPVSSLLASLLVKYP++QHRAQRAF+TYLRSIHIQKDK+I
Sbjct: 427  EKLKAAKVPVHFNKPRKELLQPVSSLLASLLVKYPDMQHRAQRAFITYLRSIHIQKDKDI 486

Query: 543  FDVLKLPIDEYAASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDTNKENVLDVSRKKL 722
            FDV+KLPIDEY+ASLGLPMTPKIRFLNQKIKSK VSTKSILVEPED++KE + +VSRKKL
Sbjct: 487  FDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKDVSTKSILVEPEDSDKETIFEVSRKKL 546

Query: 723  DTVVSKDEETENDLLQAADTSNEGEVKSSEIEEIIPAT 836
            DTV  KDEETENDLLQ ADT+NEGEVKSSEIEEIIPAT
Sbjct: 547  DTVAFKDEETENDLLQLADTANEGEVKSSEIEEIIPAT 584


>ref|XP_003544936.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max]
          Length = 743

 Score =  491 bits (1264), Expect = e-137
 Identities = 250/278 (89%), Positives = 265/278 (95%)
 Frame = +3

Query: 3    IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV 182
            IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV
Sbjct: 306  IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV 365

Query: 183  LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQML 362
            LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKS GKSVLFLLPSEIQML
Sbjct: 366  LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSEIQML 425

Query: 363  EKLKASKVPVHFNKPRKELLQPVSSLLASLLVKYPELQHRAQRAFVTYLRSIHIQKDKEI 542
            EKLKA+KVPVHFNKPR+ELLQPVSSLLASLL KYP++QHRAQRAF+TYLRSIHIQKDK+I
Sbjct: 426  EKLKAAKVPVHFNKPRQELLQPVSSLLASLLAKYPDMQHRAQRAFITYLRSIHIQKDKDI 485

Query: 543  FDVLKLPIDEYAASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDTNKENVLDVSRKKL 722
            FDV+KLPI+EY+ASLGLPMTPKIRFLN KI SK VS KSILVEPED++KE + +VSR KL
Sbjct: 486  FDVMKLPINEYSASLGLPMTPKIRFLNPKINSKDVS-KSILVEPEDSDKETIFEVSR-KL 543

Query: 723  DTVVSKDEETENDLLQAADTSNEGEVKSSEIEEIIPAT 836
            DT   KDEETEND+LQ ADT+NEGEVKSSEIEEIIPAT
Sbjct: 544  DTAAFKDEETENDILQLADTANEGEVKSSEIEEIIPAT 581


>ref|XP_003617524.1| ATP-dependent RNA helicase DBP4 [Medicago truncatula]
            gi|355518859|gb|AET00483.1| ATP-dependent RNA helicase
            DBP4 [Medicago truncatula]
          Length = 747

 Score =  479 bits (1233), Expect = e-133
 Identities = 246/279 (88%), Positives = 258/279 (92%), Gaps = 1/279 (0%)
 Frame = +3

Query: 3    IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCE-KRS 179
            IK HLQSKTLVFLSSCKQVKFVFE FKKLHPGIPLKCLHGRMKQE+RMAIYSEFCE KRS
Sbjct: 315  IKRHLQSKTLVFLSSCKQVKFVFEVFKKLHPGIPLKCLHGRMKQEKRMAIYSEFCEEKRS 374

Query: 180  VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQM 359
            VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARY S GKSVLFLLPSE  M
Sbjct: 375  VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYNSVGKSVLFLLPSETMM 434

Query: 360  LEKLKASKVPVHFNKPRKELLQPVSSLLASLLVKYPELQHRAQRAFVTYLRSIHIQKDKE 539
             EKLKA+KVPVH  KPRKELLQPVSSLLASLLVKYPELQ RAQRAFVTYLRSIH+QKDKE
Sbjct: 435  HEKLKAAKVPVHCQKPRKELLQPVSSLLASLLVKYPELQQRAQRAFVTYLRSIHLQKDKE 494

Query: 540  IFDVLKLPIDEYAASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDTNKENVLDVSRKK 719
            IFDVLKLPIDEY+ASLGLPMTPKIRFLNQKIKSKAV+TKSILVEPE   KENV + SRKK
Sbjct: 495  IFDVLKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVATKSILVEPEVPKKENVFEGSRKK 554

Query: 720  LDTVVSKDEETENDLLQAADTSNEGEVKSSEIEEIIPAT 836
            +DT+V KDEE ENDLL  ADTSNEG+VKS+EI E++PAT
Sbjct: 555  IDTIVFKDEEIENDLLHVADTSNEGDVKSAEIGELMPAT 593


>ref|XP_002319844.1| predicted protein [Populus trichocarpa] gi|222858220|gb|EEE95767.1|
            predicted protein [Populus trichocarpa]
          Length = 766

 Score =  384 bits (987), Expect = e-104
 Identities = 193/295 (65%), Positives = 231/295 (78%), Gaps = 17/295 (5%)
 Frame = +3

Query: 3    IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV 182
            +K HL SK LVFLSSCKQVKFVFEAFKKL PGIPLKCLHGRMKQE+RM IYS+FCE  SV
Sbjct: 308  VKAHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQEKRMGIYSQFCESHSV 367

Query: 183  LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQML 362
            LFSTDVA+RGLDFNKAVDWVVQVDCP++VASYIHRVGRTARY +GG+SVLFL+PSE++ML
Sbjct: 368  LFSTDVASRGLDFNKAVDWVVQVDCPDDVASYIHRVGRTARYLAGGRSVLFLMPSEMKML 427

Query: 363  EKLKASKVPVHFNKPRKELLQPVSSLLASLLVKYPELQHRAQRAFVTYLRSIHIQKDKEI 542
            EKL+ +K+PV F K   + LQPVS LL++LLVKYP++Q  AQRAF+TYLRSIHIQKDKE+
Sbjct: 428  EKLQTAKIPVQFIKANTKRLQPVSGLLSALLVKYPDMQQLAQRAFITYLRSIHIQKDKEV 487

Query: 543  FDVLKLPIDEYAASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDTNKENVLDVSRKKL 722
            FDVLKL I+E++ASLGLPMTPK+RFLNQKIK K    KS L+E ED+ KE+  ++  +KL
Sbjct: 488  FDVLKLSIEEFSASLGLPMTPKVRFLNQKIKGKKAFGKSALLESEDSEKEDAAEIPGEKL 547

Query: 723  D-----------------TVVSKDEETENDLLQAADTSNEGEVKSSEIEEIIPAT 836
            D                    S++E  E   LQ  +  N  E K+ EIE+++PAT
Sbjct: 548  DIGNFREESVGRLKENLKIGDSEEENVEKGFLQTKNALNGSEAKTGEIEDLVPAT 602


>ref|XP_002522952.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223537764|gb|EEF39382.1| dead box ATP-dependent RNA
            helicase, putative [Ricinus communis]
          Length = 753

 Score =  372 bits (955), Expect = e-101
 Identities = 192/289 (66%), Positives = 231/289 (79%), Gaps = 11/289 (3%)
 Frame = +3

Query: 3    IKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV 182
            IK HL S  LVFLSSCKQVKFV+EAFKKLHPGIPLKCLHGRMKQ +RM IYS+FCE+RSV
Sbjct: 305  IKAHLNSNILVFLSSCKQVKFVYEAFKKLHPGIPLKCLHGRMKQGKRMVIYSQFCEQRSV 364

Query: 183  LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQML 362
            LFSTDVAARGLDFNKAVDWVVQVDCPE+VASYIHRVGRTARY+SGG+SVLFLLPSE++ML
Sbjct: 365  LFSTDVAARGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYQSGGRSVLFLLPSEMKML 424

Query: 363  EKLKASKVPVHFNKPRKELLQPVSSLLASLLVKYPELQHRAQRAFVTYLRSIHIQKDKEI 542
            EKL+ +KVP+ F K   + LQPVS LL++LLVK  +LQ  A RAF+TYLRSI+IQKDKE+
Sbjct: 425  EKLQEAKVPIQFIKANAKRLQPVSGLLSALLVKNEDLQKLAIRAFITYLRSIYIQKDKEV 484

Query: 543  FDVLKLPIDEYAASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDTNKEN--------- 695
            FDV+KL IDEY+ASLGLPMTPKIRFLNQK+K K +S  S L+E ++++K++         
Sbjct: 485  FDVMKLSIDEYSASLGLPMTPKIRFLNQKMKGKKISGNSSLLESDNSDKDDAELAVGRFR 544

Query: 696  --VLDVSRKKLDTVVSKDEETENDLLQAADTSNEGEVKSSEIEEIIPAT 836
              +L   R+KLD   S +E  +   L + DT  EGE   + + E++PAT
Sbjct: 545  GEILGGQREKLDIGDSGEENVDKGFLLSKDTEPEGE---ANLSELMPAT 590


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