BLASTX nr result

ID: Glycyrrhiza24_contig00028756 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00028756
         (461 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603256.1| Glutamate receptor 2.8 [Medicago truncatula]...   226   2e-57
ref|XP_003603255.1| Glutamate receptor 2.8 [Medicago truncatula]...   224   7e-57
ref|XP_002324368.1| glutamate-gated kainate-type ion channel rec...   181   7e-44
ref|XP_002308723.1| glutamate-gated kainate-type ion channel rec...   180   9e-44
ref|XP_003631841.1| PREDICTED: glutamate receptor 2.8-like [Viti...   178   4e-43

>ref|XP_003603256.1| Glutamate receptor 2.8 [Medicago truncatula]
           gi|355492304|gb|AES73507.1| Glutamate receptor 2.8
           [Medicago truncatula]
          Length = 990

 Score =  226 bits (575), Expect = 2e-57
 Identities = 113/156 (72%), Positives = 129/156 (82%), Gaps = 4/156 (2%)
 Frame = +2

Query: 5   HMPPTLGPRFFTLAKKIGMMGQGYVWIVTDGMANLFNSFNSSVMESMEGVIGVRPYLPRT 184
           HM P+LG + FTLAKKIGMM QGYVWIVTDGMANLFNS + +V ESMEGV+G+R Y+PRT
Sbjct: 238 HMSPSLGSKLFTLAKKIGMMNQGYVWIVTDGMANLFNSLSFNVRESMEGVLGLRTYIPRT 297

Query: 185 KELDDFKVRWKRKFLRDNPALVDTNLNIFGTWAYDATTALAMAVEKVGA--TKFGYYNNT 358
           K+LDDF+VRWKRKF+ DNP LVDTNLNIFG WAYDAT ALAMA+EKVG   TKF Y  + 
Sbjct: 298 KKLDDFRVRWKRKFISDNPKLVDTNLNIFGIWAYDATIALAMAIEKVGIGNTKFDYNESK 357

Query: 359 SSSS--MLDLESFGIAQNGEKLREALSKTRFTGLSG 460
           +SS+  M + E FGI+QNGEKL EALS TRF GLSG
Sbjct: 358 TSSNYYMPNFEKFGISQNGEKLSEALSNTRFNGLSG 393


>ref|XP_003603255.1| Glutamate receptor 2.8 [Medicago truncatula]
           gi|355492303|gb|AES73506.1| Glutamate receptor 2.8
           [Medicago truncatula]
          Length = 1057

 Score =  224 bits (570), Expect = 7e-57
 Identities = 112/156 (71%), Positives = 128/156 (82%), Gaps = 4/156 (2%)
 Frame = +2

Query: 5   HMPPTLGPRFFTLAKKIGMMGQGYVWIVTDGMANLFNSFNSSVMESMEGVIGVRPYLPRT 184
           HM P+LG + FTLAKKIGMM QGYVWIVTDGMANLFNS + +V ESMEGV+G+R Y+PRT
Sbjct: 311 HMSPSLGSKLFTLAKKIGMMNQGYVWIVTDGMANLFNSLSFNVRESMEGVLGLRTYIPRT 370

Query: 185 KELDDFKVRWKRKFLRDNPALVDTNLNIFGTWAYDATTALAMAVEKVGA--TKFGYYNNT 358
           K+LDDF+VRWK KF+ DNP LVDTNLNIFG WAYDAT ALAMA+EKVG   TKF Y  + 
Sbjct: 371 KKLDDFRVRWKSKFINDNPKLVDTNLNIFGIWAYDATIALAMAIEKVGIGNTKFDYNESK 430

Query: 359 SSSS--MLDLESFGIAQNGEKLREALSKTRFTGLSG 460
           +SS+  M + E FGI+QNGEKL EALS TRF GLSG
Sbjct: 431 TSSNYYMPNFEKFGISQNGEKLSEALSNTRFNGLSG 466


>ref|XP_002324368.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222865802|gb|EEF02933.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 885

 Score =  181 bits (458), Expect = 7e-44
 Identities = 86/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%)
 Frame = +2

Query: 5   HMPPTLGPRFFTLAKKIGMMGQGYVWIVTDGM-ANLFNSFNSSVMESMEGVIGVRPYLPR 181
           HM P+LG R F++AK+IGM+ +GYVWI+TDG+ A  F+S N+SV  +M+G +GV+PY+PR
Sbjct: 200 HMFPSLGARVFSIAKEIGMVSEGYVWIMTDGLEAEFFSSPNASVTNTMQGALGVKPYVPR 259

Query: 182 TKELDDFKVRWKRKFLRDNPALVDTNLNIFGTWAYDATTALAMAVEKVGATKFGYYN-NT 358
           TK+L+ F++RWKRKF +DNP +VD +LNIFG WAYDA TALA+AVEK G    G+   N 
Sbjct: 260 TKDLETFRIRWKRKFQQDNPDIVDADLNIFGLWAYDAATALALAVEKAGTANLGFQKANV 319

Query: 359 SSSSMLDLESFGIAQNGEKLREALSKTRFTGLSG 460
           SS+S  DL + G++ NG  L +ALS   F GL+G
Sbjct: 320 SSNSSTDLATLGVSLNGPNLVQALSNITFKGLTG 353


>ref|XP_002308723.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222854699|gb|EEE92246.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 866

 Score =  180 bits (457), Expect = 9e-44
 Identities = 88/154 (57%), Positives = 116/154 (75%), Gaps = 2/154 (1%)
 Frame = +2

Query: 5   HMPPTLGPRFFTLAKKIGMMGQGYVWIVTDGMA-NLFNSFNSSVMESMEGVIGVRPYLPR 181
           HM P+LG R FT AK+IGMM +GYVWI+TDG++ +  +S N SV ++++GV+G++PY+PR
Sbjct: 209 HMYPSLGTRLFTKAKEIGMMSEGYVWIMTDGLSVDFLSSPNHSVTDTIQGVLGIKPYVPR 268

Query: 182 TKELDDFKVRWKRKFLRDNPALVDTNLNIFGTWAYDATTALAMAVEKVGATKFGYYN-NT 358
           TKEL+ F+ RWKRKFLRDNP  +D  LNI+G  AYDATTALA+AVEK G T FG+   N 
Sbjct: 269 TKELEYFRARWKRKFLRDNPNKIDAELNIYGLLAYDATTALALAVEKAGTTNFGFQKANV 328

Query: 359 SSSSMLDLESFGIAQNGEKLREALSKTRFTGLSG 460
            S+S  DL + GI+ NG  + +ALS T F GL+G
Sbjct: 329 PSNSSTDLATLGISLNGPNILQALSTTSFKGLTG 362


>ref|XP_003631841.1| PREDICTED: glutamate receptor 2.8-like [Vitis vinifera]
          Length = 983

 Score =  178 bits (452), Expect = 4e-43
 Identities = 83/152 (54%), Positives = 115/152 (75%)
 Frame = +2

Query: 5   HMPPTLGPRFFTLAKKIGMMGQGYVWIVTDGMANLFNSFNSSVMESMEGVIGVRPYLPRT 184
           HM   LG RFFT A +IGMM +GYVWI+TDG+ +L ++ +  V++SM+GV+G++P++PRT
Sbjct: 230 HMVTPLGSRFFTKADEIGMMEEGYVWILTDGLTDLLSTLDPLVIDSMQGVLGIKPHVPRT 289

Query: 185 KELDDFKVRWKRKFLRDNPALVDTNLNIFGTWAYDATTALAMAVEKVGATKFGYYNNTSS 364
           KEL++F+VRWKRKF +D+P    + LNIFG WAYDA +ALAMAVEKVGAT   +     S
Sbjct: 290 KELENFRVRWKRKFQQDHPKDETSELNIFGLWAYDAASALAMAVEKVGATNLSFQKTNIS 349

Query: 365 SSMLDLESFGIAQNGEKLREALSKTRFTGLSG 460
           S+  DL++ G++Q G KL ++L  T+F GLSG
Sbjct: 350 SNSTDLDTIGVSQIGPKLLQSLLSTKFKGLSG 381


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