BLASTX nr result

ID: Glycyrrhiza24_contig00028541 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00028541
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003630250.1| Zinc finger CCCH domain-containing protein [...   147   9e-34
gb|AFK43710.1| unknown [Lotus japonicus]                              110   1e-22
ref|XP_003602587.1| Zinc finger CCCH domain-containing protein [...    95   5e-18
ref|XP_003528041.1| PREDICTED: zinc finger CCCH domain-containin...    91   1e-16
ref|XP_004148674.1| PREDICTED: zinc finger CCCH domain-containin...    69   4e-10

>ref|XP_003630250.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355524272|gb|AET04726.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 779

 Score =  147 bits (371), Expect = 9e-34
 Identities = 76/99 (76%), Positives = 83/99 (83%)
 Frame = +1

Query: 124 MSGSSRKLSSKWDSRDEPEFAPDSVANSNSSRWSYLERDDILKPRMGFSCKEPFSGDRGS 303
           MSG SRKLSS  DSRDEPEF P+SV  SNSSR  YLER+D LKPRM FS KEPFSG RGS
Sbjct: 1   MSGGSRKLSSNRDSRDEPEFPPESVTKSNSSR--YLERNDTLKPRMRFSRKEPFSGVRGS 58

Query: 304 NKDDFKNKDYKVLDATIAQDTDGSYNMEMSPGFEEWKNK 420
           NKDD   +DY+VLDAT A+DTDGSYNM+MSPGFEEWKN+
Sbjct: 59  NKDD---EDYQVLDATFAKDTDGSYNMKMSPGFEEWKNR 94


>gb|AFK43710.1| unknown [Lotus japonicus]
          Length = 305

 Score =  110 bits (275), Expect = 1e-22
 Identities = 62/110 (56%), Positives = 69/110 (62%), Gaps = 11/110 (10%)
 Frame = +1

Query: 124 MSGSSRKLSSKWDSRDEPEFAPDS-----------VANSNSSRWSYLERDDILKPRMGFS 270
           MS   RK SSKWD  DEPEFAP S           VA SNSS+WSY E +D LKP  G S
Sbjct: 1   MSEGGRKRSSKWDLIDEPEFAPGSKQMRSGRSSADVAGSNSSKWSYSEVNDELKPGKGRS 60

Query: 271 CKEPFSGDRGSNKDDFKNKDYKVLDATIAQDTDGSYNMEMSPGFEEWKNK 420
            K+ FSG R SNKD+  NKDY+V DAT+  DTD SY+  MSP  EE K K
Sbjct: 61  SKDSFSGGRDSNKDNIMNKDYRVSDATMDLDTDRSYSKNMSPLLEERKQK 110


>ref|XP_003602587.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355491635|gb|AES72838.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 1084

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
 Frame = +1

Query: 124 MSGSSRKLSSKWDSRDEPEFAPDS-----------VANSNSSRWSYLERDDILKPRMGFS 270
           MSG+ RK SSKWD  DE +F+P S           VA SNSS W+YLE +D L+P  GFS
Sbjct: 1   MSGTGRKHSSKWDLSDEHKFSPGSKQMRSGRSSADVAGSNSSEWAYLEGNDKLRPVTGFS 60

Query: 271 CKEPFSGDRGSNKDDFKNKDYKVLDATIAQDTDGSYNMEM 390
            KE + G RGSN+DD  +KD++V ++    DTDGSY+  M
Sbjct: 61  SKESYYGGRGSNEDDAMHKDHRVFNSRREWDTDGSYSRNM 100


>ref|XP_003528041.1| PREDICTED: zinc finger CCCH domain-containing protein 38-like
           [Glycine max]
          Length = 828

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 50/99 (50%), Positives = 61/99 (61%)
 Frame = +1

Query: 124 MSGSSRKLSSKWDSRDEPEFAPDSVANSNSSRWSYLERDDILKPRMGFSCKEPFSGDRGS 303
           MSGS +K SSKWD RD P+F+PD      S  WS     D LK          FSG RGS
Sbjct: 1   MSGSGKKRSSKWDLRDNPDFSPDDGKQLRSG-WS--SAGDKLKH---------FSGGRGS 48

Query: 304 NKDDFKNKDYKVLDATIAQDTDGSYNMEMSPGFEEWKNK 420
           NKD+  NKDY+VLD+T+  D D SY+ +MSPG + WK+K
Sbjct: 49  NKDNIMNKDYRVLDSTMEWDEDESYDHKMSPGLDAWKHK 87


>ref|XP_004148674.1| PREDICTED: zinc finger CCCH domain-containing protein 38-like
           [Cucumis sativus]
          Length = 873

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 24/121 (19%)
 Frame = +1

Query: 124 MSGSSRKLSSKWDSRDE-------------------PEFAPDSVANSNSSRWSYLERDD- 243
           MSGS RK +SKWD R++                   P +    +A  + S+WS +E  + 
Sbjct: 1   MSGSGRKRTSKWDLREDSHVETDIAQEHGWPGKESRPGWISPELAGDDGSKWSGMETTNG 60

Query: 244 ILKPRM--GFSCKEPFSGDRGSNKDDFKNKDY-KVLDATIAQDTDG-SYNMEMSPGFEEW 411
           I KP+   G   +EPF G R S+K+D+ +K Y K L+ T   D D  SY+  MSPG +EW
Sbjct: 61  ISKPKQDWGLLLEEPFPGTRASHKEDYTSKGYNKDLEGTAEWDADDKSYSTRMSPGLDEW 120

Query: 412 K 414
           +
Sbjct: 121 R 121


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