BLASTX nr result

ID: Glycyrrhiza24_contig00028163 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00028163
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003534406.1| PREDICTED: structural maintenance of chromos...    83   2e-14
ref|XP_003540578.1| PREDICTED: structural maintenance of chromos...    82   6e-14
ref|XP_003606501.1| Structural maintenance of chromosomes protei...    76   3e-12
ref|XP_002871281.1| structural maintenance of chromosomes family...    65   4e-09
ref|NP_196383.1| structural maintenance of chromosomes 6A [Arabi...    65   7e-09

>ref|XP_003534406.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Glycine max]
          Length = 1057

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = -1

Query: 119 TAGIIKRLRLENFMCHSNHETEFGNHVNFITGQNGSGKS 3
           TAGI+KRLRLENFMCHS HETEFGNHVNFITGQNGSGKS
Sbjct: 16  TAGIVKRLRLENFMCHSKHETEFGNHVNFITGQNGSGKS 54


>ref|XP_003540578.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Glycine max]
          Length = 193

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 36/39 (92%), Positives = 38/39 (97%)
 Frame = -1

Query: 119 TAGIIKRLRLENFMCHSNHETEFGNHVNFITGQNGSGKS 3
           TAGI+K+LRLENFMCHS HETEFGNHVNFITGQNGSGKS
Sbjct: 10  TAGIVKQLRLENFMCHSKHETEFGNHVNFITGQNGSGKS 48


>ref|XP_003606501.1| Structural maintenance of chromosomes protein [Medicago truncatula]
           gi|355507556|gb|AES88698.1| Structural maintenance of
           chromosomes protein [Medicago truncatula]
          Length = 622

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/66 (59%), Positives = 44/66 (66%)
 Frame = -1

Query: 200 MKRGRDTWEGXXXXXXXXXXXXXXXPQTAGIIKRLRLENFMCHSNHETEFGNHVNFITGQ 21
           MKR R T+E                   AGIIK+LRLENFMCHSNHET+FG++VN ITGQ
Sbjct: 1   MKRARSTYESSSSRVSPSLE--------AGIIKKLRLENFMCHSNHETQFGSNVNLITGQ 52

Query: 20  NGSGKS 3
           NGSGKS
Sbjct: 53  NGSGKS 58


>ref|XP_002871281.1| structural maintenance of chromosomes family protein [Arabidopsis
           lyrata subsp. lyrata] gi|297317118|gb|EFH47540.1|
           structural maintenance of chromosomes family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1063

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = -1

Query: 119 TAGIIKRLRLENFMCHSNHETEFGNHVNFITGQNGSGKS 3
           ++G I R+RLENFMCHSN E EFG+ VNFITGQNGSGKS
Sbjct: 18  SSGTIVRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKS 56


>ref|NP_196383.1| structural maintenance of chromosomes 6A [Arabidopsis thaliana]
           gi|9759587|dbj|BAB11444.1| SMC-like protein [Arabidopsis
           thaliana] gi|332003807|gb|AED91190.1| structural
           maintenance of chromosomes 6A [Arabidopsis thaliana]
          Length = 1058

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = -1

Query: 119 TAGIIKRLRLENFMCHSNHETEFGNHVNFITGQNGSGKS 3
           ++G I R+RLENFMCHSN E EFG+ VNFITGQNGSGKS
Sbjct: 19  SSGKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKS 57


Top