BLASTX nr result

ID: Glycyrrhiza24_contig00027764 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00027764
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like...   171   4e-41
ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vit...   120   1e-25
ref|XP_002526350.1| GTP binding protein, putative [Ricinus commu...   108   6e-22
ref|XP_002318658.1| predicted protein [Populus trichocarpa] gi|2...   100   1e-19
ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana] gi|3...    92   3e-17

>ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like [Glycine max]
          Length = 399

 Score =  171 bits (434), Expect = 4e-41
 Identities = 82/105 (78%), Positives = 92/105 (87%)
 Frame = +1

Query: 1   AKLILTGAIGDCFVGRKEIAQYFLAIHNSSEEYKKWEKLSTKDNDRLFLNSTTECLTSFG 180
           +KLILTGAIGDC V RKE+AQ+FLAIHNSSE+YKKW KLS KDNDRLFLN TTE LTS G
Sbjct: 241 SKLILTGAIGDCLVRRKEVAQHFLAIHNSSEQYKKWAKLSMKDNDRLFLNGTTEQLTSSG 300

Query: 181 LHMNQKKQIPTDHTQDCIVEDVRRTLYETISSFDGNIRSEVETEA 315
           LHM  K QIPTDHTQDC+V+DVRRTL+ETISSF+G++R E E EA
Sbjct: 301 LHMKHKNQIPTDHTQDCVVQDVRRTLFETISSFEGDVRCEDEMEA 345


>ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera]
           gi|297744953|emb|CBI38545.3| unnamed protein product
           [Vitis vinifera]
          Length = 369

 Score =  120 bits (301), Expect = 1e-25
 Identities = 58/100 (58%), Positives = 73/100 (73%)
 Frame = +1

Query: 1   AKLILTGAIGDCFVGRKEIAQYFLAIHNSSEEYKKWEKLSTKDNDRLFLNSTTECLTSFG 180
           +KL LTGAI DC VG KE+AQYFL+I N S+EYKKWEKLS ++N+   ++    CL S  
Sbjct: 212 SKLALTGAIKDCLVGEKELAQYFLSILNRSDEYKKWEKLSAEENEISTIDQRVGCLGSSE 271

Query: 181 LHMNQKKQIPTDHTQDCIVEDVRRTLYETISSFDGNIRSE 300
           L   QK+Q PTDHTQD +V +VRR L+ETISSF G++  E
Sbjct: 272 LDSRQKRQYPTDHTQDFVVREVRRVLFETISSFPGSLEKE 311


>ref|XP_002526350.1| GTP binding protein, putative [Ricinus communis]
           gi|223534309|gb|EEF36021.1| GTP binding protein,
           putative [Ricinus communis]
          Length = 373

 Score =  108 bits (269), Expect = 6e-22
 Identities = 52/103 (50%), Positives = 71/103 (68%)
 Frame = +1

Query: 4   KLILTGAIGDCFVGRKEIAQYFLAIHNSSEEYKKWEKLSTKDNDRLFLNSTTECLTSFGL 183
           KL LTG   D  +G +E+AQYFLAI N S+EYKKW KLS ++ ++ F ++  ECL    L
Sbjct: 220 KLALTGTFRDGLIGERELAQYFLAILNLSDEYKKWAKLSAREKEKSFTDNKAECLRDKQL 279

Query: 184 HMNQKKQIPTDHTQDCIVEDVRRTLYETISSFDGNIRSEVETE 312
               KK+  TDHTQD IV   RR L+ET+SSFDG++++EV+ +
Sbjct: 280 DTEGKKEHLTDHTQDFIVHCARRKLFETVSSFDGDVQNEVDLQ 322


>ref|XP_002318658.1| predicted protein [Populus trichocarpa] gi|222859331|gb|EEE96878.1|
           predicted protein [Populus trichocarpa]
          Length = 338

 Score =  100 bits (249), Expect = 1e-19
 Identities = 49/91 (53%), Positives = 65/91 (71%)
 Frame = +1

Query: 40  VGRKEIAQYFLAIHNSSEEYKKWEKLSTKDNDRLFLNSTTECLTSFGLHMNQKKQIPTDH 219
           VG KE+A+YFLAI N+S+ YKKWE+LST  ND+ F     E  +   L+M +K+Q P+DH
Sbjct: 197 VGEKELARYFLAILNTSDGYKKWERLSTHGNDKSFTGQEVEGSSDSKLNMKRKRQYPSDH 256

Query: 220 TQDCIVEDVRRTLYETISSFDGNIRSEVETE 312
           TQD +V  VRRTL E+IS  DGNI++E + E
Sbjct: 257 TQDFMVNRVRRTLLESISCLDGNIKNEKDLE 287


>ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana]
           gi|3600035|gb|AAC35523.1| contains similarity to
           GTP-binding proteins [Arabidopsis thaliana]
           gi|332657513|gb|AEE82913.1| GTP binding protein
           [Arabidopsis thaliana]
          Length = 377

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 54/101 (53%), Positives = 64/101 (63%)
 Frame = +1

Query: 1   AKLILTGAIGDCFVGRKEIAQYFLAIHNSSEEYKKWEKLSTKDNDRLFLNSTTECLTSFG 180
           AKL LTGAI D  VG  ++A+ FL I NSS EYKKW KL    +  L  + + E   S  
Sbjct: 220 AKLALTGAIPDDIVGELKLARLFLTILNSSHEYKKWAKLCKSQD--LTESLSDESSKSDA 277

Query: 181 LHMNQKKQIPTDHTQDCIVEDVRRTLYETISSFDGNIRSEV 303
            H   K+Q  TDHTQD IV DVRR LYETIS+FDGN+  E+
Sbjct: 278 KH---KRQYATDHTQDFIVYDVRRVLYETISAFDGNLEDEI 315


Top